Rh7CG068600

General transcription factor IIE subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001364
Physical Location & Seq
Reverse (-)
4889698 .. 4892214
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG068600.1

Sequence Viewer

Length: 888 bp
ATGTATATCTATTCCTTACATCGCTTGATCTTTTTTTTGCAGACAGCTAAGGGTGTGAAGATTTTCAGTGCTGCGGTTGCTGCCACAGCCAATGGGCAACAACACAGAAAAGAAGGCGAAGAGAAAATTAAGCTGCAGACTCACTCTTACTGCTGTCTGGACTATGCTCAGATATATGATGTAGTAAGGTACAGACTGCACCTTTTGAAGAAAGAACTGAAAGATGAACTGGAGGGGAAGCACGCAGTGGAGGAATATGTATGCCATAACTGCAGGAAAAGATACAACGCATTGGATGCACTGCAACTGGTTTCTATGGAGGATGAGTACTTCCACTGCGAAAGTTGCAATGGGATACTTGTGGCCGAGAGTGACAAGCTAGATTCTCAAACCACAGCAGGCCGAGACTGCAAAGCAATGCTTCAAAATATGGAGGTACAGCTGAAGCCTTTAATGGAACAAATTAATAGAGTTAAAGATTTACCATTTCCTGAATTTGGAAGTCTCCAAGCTTGGGAAGCCAGAGCAAGTGCTCCACGACTTGCAGAGAATAGTGAATCTAGTGCCATTGATCCCTCCATATCTTCTCATGGGCTAGGGTATGGTGGGACGCCCATGCCTTACGTTGGAGATACAAAGGTTGAAGTTGTGTTTTCTAAGAATGAGGACAAGGGTAAGGATATAAAATCTCAAGCTGATAATACAGACCTAAAAGTTGTACCACCTTGGATGATCAAGCAAGAGATGACTCTTACAAGGGAACAGTGTGGAGAGTTCAGGCAAATGGAATCCTCACAAATGCACGTCTCTAGTCATCAGGTTCGTCAGGTTGGCATGAAGTCAGAACGGGATGAGGATGAAGGAGATGATAATATTGACTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05169 ko05203 map03022 map05169 map05203
Pfam Domains
Protein Families
TFIIE_alpha

Protein Analysis

295

Amino Acids

33.65

Weight (kDa)

5.38

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 611
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 4 cut(s) 191, 329, 438, 720
AfiI CCNNNNNNNGG 3 cut(s) 497, 514, 626
AgsI TTSAA 3 cut(s) 208, 425, 644
AjiI CACGTC 1 cut(s) 805
AluBI AGCT 6 cut(s) 47, 133, 379, 442, 512, 695
AluI AGCT 6 cut(s) 47, 133, 379, 442, 512, 695
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 3 cut(s) 399, 509, 811
AlwI GGATC 1 cut(s) 566
AoxI GGCC 2 cut(s) 363, 400
ApeKI GCWGC 3 cut(s) 71, 80, 133
ApoI RAATTY 1 cut(s) 494
AseI ATTAAT 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 62
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 3 cut(s) 58, 67, 120
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 1 cut(s) 732
BcoDI GTCTC 3 cut(s) 399, 509, 811
BfaI CTAG 4 cut(s) 380, 561, 596, 810
BfmI CTRYAG 2 cut(s) 134, 271
BfuI GTATCC 1 cut(s) 348
BisI GCNGC 3 cut(s) 72, 81, 134
BlsI GCNGC 3 cut(s) 73, 82, 135
BmcAI AGTACT 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 805
BmsI GCATC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 611
BsaJI CCNNGG 1 cut(s) 725
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 3 cut(s) 497, 514, 626
Bse1I ACTGG 3 cut(s) 234, 312, 884
Bse3DI GCAATG 2 cut(s) 355, 423
BseDI CCNNGG 1 cut(s) 725
BseGI GGATG 5 cut(s) 301, 328, 735, 856, 862
BseLI CCNNNNNNNGG 3 cut(s) 497, 514, 626
BseMI GCAATG 2 cut(s) 355, 423
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 3 cut(s) 234, 312, 884
BseXI GCAGC 3 cut(s) 58, 67, 120
BsgI GTGCAG 1 cut(s) 182
BshFI GGCC 2 cut(s) 365, 402
BsiHKAI GWGCWC 1 cut(s) 535
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 497, 514, 626
BsmAI GTCTC 3 cut(s) 399, 509, 811
BsmBI CGTCTC 1 cut(s) 811
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 2 cut(s) 365, 402
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 3 cut(s) 27, 571, 732
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 365, 402
BspCNI CTCAG 1 cut(s) 181
BspMAI CTGCAG 2 cut(s) 138, 275
BspPI GGATC 1 cut(s) 566
BsrDI GCAATG 2 cut(s) 355, 423
BsrI ACTGG 3 cut(s) 234, 312, 884
BssECI CCNNGG 1 cut(s) 725
BssMI GATC 3 cut(s) 27, 571, 732
BssNI GRCGYC 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 725
Bst4CI ACNGT 1 cut(s) 765
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 243, 400
BstDEI CTNAG 3 cut(s) 48, 168, 657
BstF5I GGATG 5 cut(s) 301, 328, 735, 856, 862
BstKTI GATC 3 cut(s) 30, 574, 735
BstMAI GTCTC 3 cut(s) 399, 509, 811
BstMBI GATC 3 cut(s) 27, 571, 732
BstMWI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 270, 296, 345, 408, 518
BstSFI CTRYAG 2 cut(s) 134, 271
BstV1I GCAGC 3 cut(s) 58, 67, 120
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 2 cut(s) 365, 402
BtgZI GCGATG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 805
BtsCI GGATG 5 cut(s) 301, 328, 735, 856, 862
BtsI GCAGTG 3 cut(s) 252, 299, 334
BtsIMutI CAGTG 5 cut(s) 73, 252, 299, 334, 770
Cac8I GCNNGC 2 cut(s) 243, 400
CseI GACGC 1 cut(s) 619
Csp6I GTAC 4 cut(s) 190, 328, 437, 719
CviAII CATG 3 cut(s) 590, 616, 835
CviQI GTAC 4 cut(s) 190, 328, 437, 719
DdeI CTNAG 3 cut(s) 48, 168, 657
DpnI GATC 3 cut(s) 29, 573, 734
DpnII GATC 3 cut(s) 27, 571, 732
DraIII CACNNNGTG 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
Esp3I CGTCTC 1 cut(s) 811
FaeI CATG 3 cut(s) 593, 619, 838
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 1 cut(s) 622
FatI CATG 3 cut(s) 589, 615, 834
FbaI TGATCA 1 cut(s) 732
Fnu4HI GCNGC 3 cut(s) 72, 81, 134
FokI GGATG 5 cut(s) 308, 335, 742, 863, 869
Fsp4HI GCNGC 3 cut(s) 72, 81, 134
FspBI CTAG 4 cut(s) 380, 561, 596, 810
GluI GCNGC 3 cut(s) 72, 81, 134
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 2 cut(s) 365, 402
HgaI GACGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 3 cut(s) 593, 619, 838
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 5 cut(s) 139, 383, 557, 748, 788
Hpy188I TCNGA 2 cut(s) 171, 844
Hpy188III TCNNGA 2 cut(s) 158, 491
HpyAV CCTTC 2 cut(s) 107, 854
HpyCH4III ACNGT 1 cut(s) 765
HpyCH4IV ACGT 2 cut(s) 624, 804
HpyF10VI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 270, 296, 345, 408, 518
HpyF3I CTNAG 3 cut(s) 48, 168, 657
HpySE526I ACGT 2 cut(s) 624, 804
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 3 cut(s) 593, 619, 838
Ksp22I TGATCA 1 cut(s) 732
Kzo9I GATC 3 cut(s) 27, 571, 732
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 3 cut(s) 58, 67, 120
LweI GCATC 1 cut(s) 286
MaeI CTAG 4 cut(s) 380, 561, 596, 810
MaeII ACGT 2 cut(s) 624, 804
MaeIII GTNAC 1 cut(s) 371
MalI GATC 3 cut(s) 29, 573, 734
MboI GATC 3 cut(s) 27, 571, 732
MboII GAAGA 4 cut(s) 70, 131, 220, 576
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 3 cut(s) 126, 462, 494
MlyI GAGTC 2 cut(s) 133, 742
MmeI TCCRAC 1 cut(s) 607
MnlI CCTC 8 cut(s) 226, 244, 313, 427, 586, 658, 802, 847
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 4 cut(s) 129, 452, 465, 474
MspA1I CMGCKG 1 cut(s) 442
MwoI GCNNNNNNNGC 8 cut(s) 77, 80, 86, 270, 296, 345, 408, 518
NdeII GATC 3 cut(s) 27, 571, 732
NlaIII CATG 3 cut(s) 593, 619, 838
NmeAIII GCCGAG 2 cut(s) 391, 428
NmuCI GTSAC 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 383, 557, 788
PkrI GCNGC 3 cut(s) 73, 82, 135
PleI GAGTC 2 cut(s) 133, 742
PpsI GAGTC 2 cut(s) 133, 742
PshBI ATTAAT 1 cut(s) 465
PstI CTGCAG 2 cut(s) 138, 275
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 4 cut(s) 191, 329, 438, 720
RsaNI GTAC 4 cut(s) 190, 328, 437, 719
SaqAI TTAA 4 cut(s) 129, 452, 465, 474
SatI GCNGC 3 cut(s) 72, 81, 134
Sau3AI GATC 3 cut(s) 27, 571, 732
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 2 cut(s) 133, 742
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 2 cut(s) 134, 271
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
Sse9I AATT 3 cut(s) 126, 462, 494
SsiI CCGC 1 cut(s) 74
SspI AATATT 1 cut(s) 874
SspMI CTAG 4 cut(s) 380, 561, 596, 810
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 1 cut(s) 765
TaiI ACGT 2 cut(s) 627, 807
TasI AATT 3 cut(s) 126, 462, 494
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 3 cut(s) 383, 557, 788
Tru1I TTAA 4 cut(s) 129, 452, 465, 474
Tru9I TTAA 4 cut(s) 129, 452, 465, 474
TscAI CASTG 5 cut(s) 73, 252, 306, 341, 770
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 3 cut(s) 71, 80, 133
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 3 cut(s) 240, 851, 873
TspRI CASTG 5 cut(s) 73, 252, 306, 341, 770
VspI ATTAAT 1 cut(s) 465
XapI RAATTY 1 cut(s) 494
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 4 cut(s) 380, 561, 596, 810
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.