Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8510707.1

Orthogroup ID

OG0001364

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3426

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8510707.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atgagtatcgagcctttcaataggttggtgaagctcgcggcgagggcgttctacgatgacataaccacgaaaggggataaccagcccaagactggccggagcgacaatcggggaattgccgtggttgtgctcgacgcgctctcaaggcgacaatgggtgagagaagaggatttggcaaaggacttgaaactgcactcgaagcaacttcgtcgtactttgcgattttttgaggaggagaaactggtcactcgagaccataggaaggagacagctaagggtgcaaagatatttagtgctgcagttgcggcaacagctgacgggcaacaacatacaaaagaaggggaagagaaaattaagttgcacactcactcttactgctgtctggactatgctcagatatatgatgtagtaaggtacagactgcaccgtatgaggaaaaaactgaaagatgaattggaggacaagaacacagttcaggaatatgtatgccctaactgtgggaaaagatacaatgctttggatgcactgcaactcatctctttggaggatgagtacttccactgcgagagttgcaatggggagcttgtggctgagagtgacaagctagcttctcaagatgtaggagatggagatagcaatgcaaggaggcaaaggcgtgaaaaactgaaagacatgcttcaaaatatggaggtacagctgaagcctttaatggaacaaattaatagggtgaaagacttacctgctcctgaatttggaactctccaagcttgggaagcacgagcacatgctcaacgacgtgcagagaatggagaatctagtgccatggatccctccaaatcttcacatgggctggggtacggtggaacgcccatgccttttcttggagatacaaaagttgaagttgattttgggaatgaaggcaagggtaacgatgtcaaatcagaagctgatattacaggccagaaaattttgccaccttggatgataaagcaagggatgaacctgacaaaggaacagcgtggagaggtaaagcaggaggcaaagatggatggcacgttagcagctccagagtattcagatgacaaaaagtcaaatgctgaagataatgataaggctttccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_alpha

Protein Analysis

374

Amino Acids

42.44

Weight (kDa)

6.36

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03280 AT1G03280 AT1G03280 AT4G20340 AT4G20340 AT4G20340 AT4G20810
fragaria_vesca	FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_6g37931 FvH4_7g21490
malus_domestica	MD06G1210700.v1.1 MD14G1221400.v1.1
prunus_persica	Prupe.5G216800_v2.0.a1 Prupe.5G216800_v2.0.a1
pyrus_communis	pycom06g18820 pycom14g18320
rosa_chinensis	RchiOBHm_Chr1g0365801 RchiOBHm_Chr7g0184541 RchiOBHm_Chr7g0184551
rosa_laevigata	RLG00000004967 RLG00000004968 RLG00000027395
rosa_multiflora	Rmu_co8306195.1_g000001 Rmu_co8510707.1_g000001 Rmu_sc0004311.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269510 Rroxscaffold_3G00269520 Rroxscaffold_7G00188130 Rroxscaffold_7G00188140
rosa_rugosa	Rorug01G0324300
rosa_samantha	Rh1AG333300 Rh1BG294200 Rh1CG310900 Rh1DG326600 Rh7AG079200 Rh7AG079300 Rh7BG068000 Rh7BG068100 Rh7CG068500 Rh7CG068600 Rh7DG068000
rosa_wichuraiana	Rw1G029580 Rw7G005600 Rw7G005610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	748
AccII	CGCG	2 cut(s)	38, 137
AciI	CCGC	2 cut(s)	38, 305
AclWI	GGATC	2 cut(s)	821, 834
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	749, 966
AcuI	CTGAAG	2 cut(s)	719, 1119
AfaI	GTAC	5 cut(s)	214, 416, 554, 693, 857
AfiI	CCNNNNNNNGG	8 cut(s)	72, 92, 262, 497, 752, 769, 881, 1009
AgsI	TTSAA	4 cut(s)	19, 187, 680, 899
AhdI	GACNNNNNGTC	1 cut(s)	1087
AjiI	CACGTC	1 cut(s)	797
AjuI	GAANNNNNNNTTGG	4 cut(s)	437, 469, 891, 923
Alw21I	GWGCWC	2 cut(s)	132, 784
Alw26I	GTCTC	2 cut(s)	246, 260
AlwI	GGATC	2 cut(s)	821, 834
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	2 cut(s)	94, 958
ApeKI	GCWGC	2 cut(s)	296, 1061
ApoI	RAATTY	2 cut(s)	749, 966
AseI	ATTAAT	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	40, 169, 739
AsuNHI	GCTAGC	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	249
BaeI	ACNNNNGTAYC	2 cut(s)	879, 912
BamHI	GGATCC	1 cut(s)	826
BauI	CACGAG	1 cut(s)	777
Bbv12I	GWGCWC	2 cut(s)	132, 784
BbvI	GCAGC	2 cut(s)	283, 1073
BccI	CCATC	3 cut(s)	620, 1039, 1043
BceAI	ACGGC	1 cut(s)	104
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcoDI	GTCTC	2 cut(s)	246, 260
BfaI	CTAG	2 cut(s)	605, 816
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	748
BisI	GCNGC	4 cut(s)	39, 297, 306, 1062
BlsI	GCNGC	4 cut(s)	40, 298, 307, 1063
BmcAI	AGTACT	1 cut(s)	554
BmeRI	GACNNNNNGTC	1 cut(s)	1087
BmeT110I	CYCGRG	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	797
BmiI	GGNNCC	1 cut(s)	828
BmsI	GCATC	1 cut(s)	511
BmtI	GCTAGC	1 cut(s)	608
BpmI	CTGGAG	1 cut(s)	1050
Bpu10I	CCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	127, 597
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	120, 822, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	8 cut(s)	72, 92, 262, 497, 752, 769, 881, 1009
Bse1I	ACTGG	2 cut(s)	97, 246
Bse3DI	GCAATG	2 cut(s)	580, 643
BseDI	CCNNGG	3 cut(s)	120, 822, 977
BseGI	GGATG	5 cut(s)	526, 553, 987, 1002, 1054
BseLI	CCNNNNNNNGG	8 cut(s)	72, 92, 262, 497, 752, 769, 881, 1009
BseMI	GCAATG	2 cut(s)	580, 643
BseMII	CTCAG	2 cut(s)	407, 582
BseNI	ACTGG	2 cut(s)	97, 246
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	2 cut(s)	283, 1073
BseYI	CCCAGC	1 cut(s)	850
BsgI	GTGCAG	3 cut(s)	176, 407, 819
Bsh1236I	CGCG	2 cut(s)	38, 137
BshFI	GGCC	2 cut(s)	96, 960
BsiHKAI	GWGCWC	2 cut(s)	132, 784
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	8 cut(s)	72, 92, 262, 497, 752, 769, 881, 1009
BsmAI	GTCTC	2 cut(s)	246, 260
BsnI	GGCC	2 cut(s)	96, 960
Bso31I	GGTCTC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	132, 784
Bsp143I	GATC	1 cut(s)	826
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	2 cut(s)	38, 305
BspANI	GGCC	2 cut(s)	96, 960
BspCNI	CTCAG	2 cut(s)	406, 583
BspFNI	CGCG	2 cut(s)	38, 137
BspLI	GGNNCC	1 cut(s)	828
BspMAI	CTGCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	748
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	821, 834
BspTNI	GGTCTC	1 cut(s)	246
BsrDI	GCAATG	2 cut(s)	580, 643
BsrI	ACTGG	2 cut(s)	97, 246
BssECI	CCNNGG	3 cut(s)	120, 822, 977
BssMI	GATC	1 cut(s)	826
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	822, 977
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	4 cut(s)	428, 472, 497, 860
Bst6I	CTCTTC	2 cut(s)	159, 339
BstC8I	GCNNGC	2 cut(s)	36, 606
BstDEI	CTNAG	3 cut(s)	273, 393, 591
BstDSI	CCRYGG	2 cut(s)	120, 822
BstENI	CCTNNNNNAGG	1 cut(s)	1007
BstF5I	GGATG	5 cut(s)	526, 553, 987, 1002, 1054
BstFNI	CGCG	2 cut(s)	38, 137
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	829
BstMAI	GTCTC	2 cut(s)	246, 260
BstMBI	GATC	1 cut(s)	826
BstNSI	RCATGY	2 cut(s)	676, 788
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	2 cut(s)	38, 137
BstV1I	GCAGC	2 cut(s)	283, 1073
BstX2I	RGATCY	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	826
BsuRI	GGCC	2 cut(s)	96, 960
BtgI	CCRYGG	2 cut(s)	120, 822
BtrI	CACGTC	1 cut(s)	797
BtsCI	GGATG	5 cut(s)	526, 553, 987, 1002, 1054
BtsI	GCAGTG	2 cut(s)	524, 559
BtsIMutI	CAGTG	2 cut(s)	524, 559
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	2 cut(s)	36, 606
CaiI	CAGNNNCTG	1 cut(s)	947
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	5 cut(s)	213, 415, 553, 692, 856
CviAII	CATG	5 cut(s)	673, 785, 823, 845, 871
CviQI	GTAC	5 cut(s)	213, 415, 553, 692, 856
DdeI	CTNAG	3 cut(s)	273, 393, 591
DpnI	GATC	1 cut(s)	828
DpnII	GATC	1 cut(s)	826
DriI	GACNNNNNGTC	1 cut(s)	1087
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	159, 339
Eam1105I	GACNNNNNGTC	1 cut(s)	1087
EarI	CTCTTC	2 cut(s)	159, 339
Eco130I	CCWWGG	2 cut(s)	822, 977
Eco31I	GGTCTC	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	719, 1119
Eco88I	CYCGRG	1 cut(s)	249
EcoNI	CCTNNNNNAGG	1 cut(s)	1007
EcoT14I	CCWWGG	2 cut(s)	822, 977
ErhI	CCWWGG	2 cut(s)	822, 977
FaeI	CATG	5 cut(s)	676, 788, 826, 848, 874
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FatI	CATG	5 cut(s)	672, 784, 822, 844, 870
Fnu4HI	GCNGC	4 cut(s)	39, 297, 306, 1062
FokI	GGATG	5 cut(s)	533, 560, 994, 1009, 1061
Fsp4HI	GCNGC	4 cut(s)	39, 297, 306, 1062
FspBI	CTAG	2 cut(s)	605, 816
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	4 cut(s)	39, 297, 306, 1062
GsaI	CCCAGC	1 cut(s)	854
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	2 cut(s)	96, 960
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	5 cut(s)	676, 788, 826, 848, 874
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	1 cut(s)	812
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	3 cut(s)	40, 169, 739
Hpy188I	TCNGA	3 cut(s)	396, 943, 1078
Hpy188III	TCNNGA	6 cut(s)	251, 383, 476, 614, 746, 1067
Hpy99I	CGWCG	3 cut(s)	137, 213, 798
HpyAV	CCTTC	3 cut(s)	256, 332, 911
HpyCH4III	ACNGT	4 cut(s)	428, 472, 497, 860
HpyCH4IV	ACGT	2 cut(s)	796, 1055
HpyF3I	CTNAG	3 cut(s)	273, 393, 591
HpySE526I	ACGT	2 cut(s)	796, 1055
Hsp92II	CATG	5 cut(s)	676, 788, 826, 848, 874
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	826
LmnI	GCTCC	4 cut(s)	99, 580, 748, 1069
Lsp1109I	GCAGC	2 cut(s)	283, 1073
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	2 cut(s)	605, 816
MaeII	ACGT	2 cut(s)	796, 1055
MaeIII	GTNAC	3 cut(s)	244, 596, 926
MalI	GATC	1 cut(s)	828
MboI	GATC	1 cut(s)	826
MboII	GAAGA	4 cut(s)	176, 356, 831, 1112
MflI	RGATCY	1 cut(s)	826
MhlI	GDGCHC	2 cut(s)	132, 784
MluCI	AATT	6 cut(s)	114, 351, 452, 717, 749, 966
MseI	TTAA	3 cut(s)	354, 707, 720
MspA1I	CMGCKG	2 cut(s)	314, 697
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	38, 137
NcoI	CCATGG	1 cut(s)	822
NdeII	GATC	1 cut(s)	826
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	5 cut(s)	676, 788, 826, 848, 874
NlaIV	GGNNCC	1 cut(s)	828
NmuCI	GTSAC	2 cut(s)	244, 596
NspI	RCATGY	2 cut(s)	676, 788
PaeR7I	CTCGAG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	812
PkrI	GCNGC	4 cut(s)	40, 298, 307, 1063
PshBI	ATTAAT	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	850
PspN4I	GGNNCC	1 cut(s)	828
PstI	CTGCAG	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	826
PvuII	CAGCTG	2 cut(s)	314, 697
RsaI	GTAC	5 cut(s)	214, 416, 554, 693, 857
RsaNI	GTAC	5 cut(s)	213, 415, 553, 692, 856
SaqAI	TTAA	3 cut(s)	354, 707, 720
SatI	GCNGC	4 cut(s)	39, 297, 306, 1062
Sau3AI	GATC	1 cut(s)	826
ScaI	AGTACT	1 cut(s)	554
SduI	GDGCHC	2 cut(s)	132, 784
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	297
Sfr274I	CTCGAG	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	249
SmlI	CTYRAG	3 cut(s)	142, 249, 612
SmoI	CTYRAG	3 cut(s)	142, 249, 612
Sse9I	AATT	6 cut(s)	114, 351, 452, 717, 749, 966
SsiI	CCGC	2 cut(s)	38, 305
SspMI	CTAG	2 cut(s)	605, 816
StyI	CCWWGG	2 cut(s)	822, 977
TaaI	ACNGT	4 cut(s)	428, 472, 497, 860
TaiI	ACGT	2 cut(s)	799, 1058
TaqI	TCGA	4 cut(s)	9, 132, 197, 250
TasI	AATT	6 cut(s)	114, 351, 452, 717, 749, 966
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	2 cut(s)	41, 308
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	3 cut(s)	354, 707, 720
Tru9I	TTAA	3 cut(s)	354, 707, 720
TscAI	CASTG	2 cut(s)	531, 566
TseFI	GTSAC	2 cut(s)	244, 596
TseI	GCWGC	2 cut(s)	296, 1061
Tsp45I	GTSAC	2 cut(s)	244, 596
TspDTI	ATGAA	3 cut(s)	465, 930, 1013
TspRI	CASTG	2 cut(s)	531, 566
VspI	ATTAAT	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	1007
XapI	RAATTY	2 cut(s)	749, 966
XceI	RCATGY	2 cut(s)	676, 788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	249
XspI	CTAG	2 cut(s)	605, 816
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.