Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001364

Physical Location & Seq

Genomic Coordinates Reverse (-)

4884438 .. 4887435

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG068500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAATTGGAGGACAAGAACACAGTTCAGGAATATATACAATGCTTTGGATGCACTGCAACTCATTTCTTTGGAGGATGAGTACTTCCACTGCGAGAGTTGCAATGGGGAGCTTGTGGCTGAGAGTGACAAGCTAGCTTCTCAAGATGTTGGAGATGGAGATAGCAATGCAAGGAGGCAAAGGCGTGAAAAACTGAAAGACATGCTTCAAAATATGGAGGTACAGCTGAAGCCTTTAATGGAACAAATTAATAGGGTGAAAGACTTACCTGCTCCTGAATTTGGAACTCTCCAAGCTTGGGAAGCACGAGCACATGCTCAACGACGTGCAGAGAATGGAGAATCTAGTGCCATGGATCCCTCCAAATCGTCACATGGGCTAGGGTACGGTGGAACGCCCATGCCTTTTCTTGGAGATACAAAAATATTTCTTCCAATTGATGTATCAAGCACTGCCGATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05169 ko05203 map03022 map05169 map05203

Pfam Domains

Protein Families

TFIIE_alpha

Protein Analysis

154

Amino Acids

17.32

Weight (kDa)

5.08

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03280 AT1G03280 AT1G03280 AT4G20340 AT4G20340 AT4G20340 AT4G20810
fragaria_vesca	FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_5g12750 FvH4_6g37931 FvH4_7g21490
malus_domestica	MD06G1210700.v1.1 MD14G1221400.v1.1
prunus_persica	Prupe.5G216800_v2.0.a1 Prupe.5G216800_v2.0.a1
pyrus_communis	pycom06g18820 pycom14g18320
rosa_chinensis	RchiOBHm_Chr1g0365801 RchiOBHm_Chr7g0184541 RchiOBHm_Chr7g0184551
rosa_laevigata	RLG00000004967 RLG00000004968 RLG00000027395
rosa_multiflora	Rmu_co8306195.1_g000001 Rmu_co8510707.1_g000001 Rmu_sc0004311.1_g000011
rosa_roxburghii	Rroxscaffold_3G00269510 Rroxscaffold_3G00269520 Rroxscaffold_7G00188130 Rroxscaffold_7G00188140
rosa_rugosa	Rorug01G0324300
rosa_samantha	Rh1AG333300 Rh1BG294200 Rh1CG310900 Rh1DG326600 Rh7AG079200 Rh7AG079300 Rh7BG068000 Rh7BG068100 Rh7CG068500 Rh7CG068600 Rh7DG068000
rosa_wichuraiana	Rw1G029580 Rw7G005600 Rw7G005610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	350, 363
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	3 cut(s)	83, 222, 386
AfiI	CCNNNNNNNGG	3 cut(s)	281, 298, 410
AgsI	TTSAA	1 cut(s)	209
AjiI	CACGTC	1 cut(s)	326
AluBI	AGCT	5 cut(s)	112, 133, 137, 226, 296
AluI	AGCT	5 cut(s)	112, 133, 137, 226, 296
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	350, 363
ApoI	RAATTY	1 cut(s)	278
AseI	ATTAAT	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	355
BauI	CACGAG	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	1 cut(s)	149
BfaI	CTAG	3 cut(s)	134, 345, 380
BfuAI	ACCTGC	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	357
BmsI	GCATC	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	351
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 298, 410
Bse3DI	GCAATG	2 cut(s)	109, 172
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	55, 82
BseLI	CCNNNNNNNGG	3 cut(s)	281, 298, 410
BseMI	GCAATG	2 cut(s)	109, 172
BseMII	CTCAG	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	281, 298, 410
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	355
Bsp19I	CCATGG	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	350, 363
BsrDI	GCAATG	2 cut(s)	109, 172
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	355
BssSI	CACGAG	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	24, 389
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	55, 82
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 99, 302
BstNSI	RCATGY	2 cut(s)	205, 317
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BtgI	CCRYGG	1 cut(s)	351
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	55, 82
BtsI	GCAGTG	3 cut(s)	53, 88, 450
BtsIMutI	CAGTG	3 cut(s)	53, 88, 450
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	135
Csp6I	GTAC	3 cut(s)	82, 221, 385
CviAII	CATG	5 cut(s)	202, 314, 352, 374, 400
CviJI	RGCY	8 cut(s)	112, 119, 133, 137, 226, 232, 296, 379
CviKI_1	RGCY	8 cut(s)	112, 119, 133, 137, 226, 232, 296, 379
CviQI	GTAC	3 cut(s)	82, 221, 385
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	5 cut(s)	205, 317, 355, 377, 403
FaiI	YATR	9 cut(s)	35, 37, 203, 215, 315, 353, 375, 401, 463
FalI	AAGNNNNNCTT	2 cut(s)	189, 221
FatI	CATG	5 cut(s)	201, 313, 351, 373, 399
FokI	GGATG	2 cut(s)	62, 89
FspBI	CTAG	3 cut(s)	134, 345, 380
Hin1II	CATG	5 cut(s)	205, 317, 355, 377, 403
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	1 cut(s)	341
HphI	GGTGA	1 cut(s)	268
Hpy188III	TCNNGA	3 cut(s)	28, 143, 275
Hpy99I	CGWCG	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	24, 389
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	5 cut(s)	53, 58, 102, 170, 329
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 99, 302
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	5 cut(s)	205, 317, 355, 377, 403
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	109, 277
LpnPI	CCDG	3 cut(s)	13, 282, 288
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	3 cut(s)	134, 345, 380
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	125, 369
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	422
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	4 cut(s)	4, 246, 278, 435
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	5 cut(s)	3, 67, 168, 211, 370
MseI	TTAA	2 cut(s)	236, 249
MspA1I	CMGCKG	1 cut(s)	226
MunI	CAATTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	50, 99, 302
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	1 cut(s)	355
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	205, 317, 355, 377, 403
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	2 cut(s)	125, 369
NspI	RCATGY	2 cut(s)	205, 317
PfeI	GAWTC	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	226
RsaI	GTAC	3 cut(s)	83, 222, 386
RsaNI	GTAC	3 cut(s)	82, 221, 385
SaqAI	TTAA	2 cut(s)	236, 249
Sau3AI	GATC	1 cut(s)	355
ScaI	AGTACT	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	8 cut(s)	114, 135, 139, 222, 228, 271, 298, 328
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	4, 246, 278, 435
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	3 cut(s)	134, 345, 380
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	24, 389
TaiI	ACGT	1 cut(s)	328
TasI	AATT	4 cut(s)	4, 246, 278, 435
TatI	WGTACW	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	236, 249
Tru9I	TTAA	2 cut(s)	236, 249
TscAI	CASTG	3 cut(s)	60, 95, 457
TseFI	GTSAC	2 cut(s)	125, 369
Tsp45I	GTSAC	2 cut(s)	125, 369
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	60, 95, 457
VspI	ATTAAT	1 cut(s)	249
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	205, 317
XspI	CTAG	3 cut(s)	134, 345, 380
ZrmI	AGTACT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.