Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000532.1

Orthogroup ID

OG0002465

Physical Location & Seq

Genomic Coordinates Forward (+)

161644 .. 163647

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgtcgtttcatgaagctgtattttccttgcccttatgtttgaccagtgcttggaagatatacattactgttgatatttttcgtttccctaaattcaatattaatggttgcaggtcatgggatcatcacgatattctctctgttctgcctgaatataattcaactagtcactgctcaacgaatgcgcggttgagatcagttgcttcttatagtggtaggaaggagactgttgtttatgctaccgacataaatactggagttgtgattcggtgcaaagtttttatcgacaaattttccagaatccagatatttcataattatgttatacttgacttagatgggcttgacactcttcaagtccgtgccttcgatgatgaaggtattttcatgatgctggttatcacagtcaggaagatgccggtggctggttcggttgaattttggcaggttccgatggtgaaatttccggttccgggtttctggggtggagacgctgcaggtggtcgagtatggctgcaggaggtggtgaggaaggctttgaaccgggcagaggtacttttgctacttccggaggccggttcggtgggaggggccgccggttctggactgctggagttgagatcttcaaggtgggcggcgatggtttctgggatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0012505 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Big_2 RRM_1

Protein Analysis

218

Amino Acids

24.29

Weight (kDa)

8.37

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_NUP210_1st	PF22967	35 - 96	1.8e-09	NUP210 Ig-like domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24750
fragaria_vesca	FvH4_5g06601 FvH4_5g06601
malus_domestica	MD06G1224500.v1.1 MD14G1168400.v1.1 MD14G1168500.v1.1
prunus_persica	Prupe.5G163400_v2.0.a1
pyrus_communis	pycom06g14590 pycom14g14040
rosa_chinensis	RchiOBHm_Chr1g0313851 RchiOBHm_Chr2g0119491 RchiOBHm_Chr3g0475211 RchiOBHm_Chr7g0192141
rosa_laevigata	RLG00000004393
rosa_multiflora	Rmu_co8284265.1_g000001 Rmu_sc0000532.1_g000033 Rmu_sc0002164.1_g000021 Rmu_ssc0000421.1_g000056
rosa_roxburghii	Rroxscaffold_3G00263270 Rroxscaffold_5G00338510
rosa_rugosa	Rorug02G0315800
rosa_samantha	Rh1CG190600 Rh2CG296500 Rh2CG301500 Rh2DG305300 Rh2DG333600 Rh3AG197200 Rh3CG297700 Rh4BG186600 Rh4BG221800 Rh5CG365300 Rh6AG223100 Rh6CG220800 Rh7AG123500 Rh7BG125200 Rh7CG127900 Rh7DG127100
rosa_wichuraiana	Rw2G005530 Rw3G015860 Rw3G028470 Rw7G010550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	3 cut(s)	102, 436, 488
AccB7I	CCANNNNNTGG	1 cut(s)	51
AccII	CGCG	1 cut(s)	187
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	3 cut(s)	187, 594, 635
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	4 cut(s)	92, 290, 437, 461
AfaI	GTAC	1 cut(s)	555
AfiI	CCNNNNNNNGG	5 cut(s)	51, 425, 473, 550, 575
AgsI	TTSAA	6 cut(s)	97, 162, 356, 437, 541, 627
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	2 cut(s)	218, 483
AlwI	GGATC	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	568
AoxI	GGCC	2 cut(s)	573, 591
ApeKI	GCWGC	2 cut(s)	494, 514
ApoI	RAATTY	4 cut(s)	92, 290, 437, 461
AseI	ATTAAT	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	591
AsuC2I	CCSGG	2 cut(s)	474, 545
AsuHPI	GGTGA	2 cut(s)	469, 538
BbvI	GCAGC	2 cut(s)	481, 501
BccI	CCATC	3 cut(s)	332, 448, 634
BcnI	CCSGG	2 cut(s)	474, 545
BcoDI	GTCTC	2 cut(s)	218, 483
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	495, 515
BfuAI	ACCTGC	3 cut(s)	102, 436, 488
BglII	AGATCT	1 cut(s)	620
BisI	GCNGC	4 cut(s)	495, 515, 594, 636
BlsI	GCNGC	4 cut(s)	496, 516, 595, 637
Bme1390I	CCNGG	2 cut(s)	474, 545
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	3 cut(s)	450, 471, 592
BmrFI	CCNGG	2 cut(s)	474, 545
BmsI	GCATC	2 cut(s)	381, 405
BpmI	CTGGAG	2 cut(s)	276, 632
BpuMI	CCSGG	2 cut(s)	474, 545
BsaWI	WCCGGW	2 cut(s)	466, 568
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 425, 473, 550, 575
Bse118I	RCCGGY	3 cut(s)	418, 575, 596
Bse1I	ACTGG	2 cut(s)	45, 259
BseAI	TCCGGA	1 cut(s)	568
BseLI	CCNNNNNNNGG	5 cut(s)	51, 425, 473, 550, 575
BseNI	ACTGG	2 cut(s)	45, 259
BseXI	GCAGC	2 cut(s)	481, 501
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	575, 593
BsiSI	CCGG	7 cut(s)	419, 467, 473, 544, 569, 576, 597
BslI	CCNNNNNNNGG	5 cut(s)	51, 425, 473, 550, 575
BsmAI	GTCTC	2 cut(s)	218, 483
BsmBI	CGTCTC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	575, 593
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	121, 194, 620
BspACI	CCGC	3 cut(s)	187, 594, 635
BspANI	GGCC	2 cut(s)	575, 593
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	187
BspHI	TCATGA	2 cut(s)	10, 387
BspLI	GGNNCC	3 cut(s)	450, 471, 592
BspMAI	CTGCAG	2 cut(s)	499, 519
BspMI	ACCTGC	3 cut(s)	102, 436, 488
BspPI	GGATC	1 cut(s)	129
BsrFI	RCCGGY	3 cut(s)	418, 575, 596
BsrI	ACTGG	2 cut(s)	45, 259
BssAI	RCCGGY	3 cut(s)	418, 575, 596
BssMI	GATC	3 cut(s)	121, 194, 620
Bst4CI	ACNGT	3 cut(s)	70, 229, 406
Bst6I	CTCTTC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	124, 197, 623
BstMAI	GTCTC	2 cut(s)	218, 483
BstMBI	GATC	3 cut(s)	121, 194, 620
BstSCI	CCNGG	2 cut(s)	472, 543
BstSFI	CTRYAG	2 cut(s)	495, 515
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	481, 501
BstX2I	RGATCY	1 cut(s)	620
BstYI	RGATCY	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	575, 593
BtgZI	GCGATG	1 cut(s)	653
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	52, 169
BveI	ACCTGC	3 cut(s)	102, 436, 488
CciI	TCATGA	2 cut(s)	10, 387
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	3 cut(s)	418, 575, 596
Cfr13I	GGNCC	1 cut(s)	591
CseI	GACGC	1 cut(s)	500
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	3 cut(s)	11, 117, 388
CviJI	RGCY	7 cut(s)	17, 343, 425, 514, 536, 575, 593
CviKI_1	RGCY	7 cut(s)	17, 343, 425, 514, 536, 575, 593
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	3 cut(s)	123, 196, 622
DpnII	GATC	3 cut(s)	121, 194, 620
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	3 cut(s)	14, 120, 391
FatI	CATG	3 cut(s)	10, 116, 387
Fnu4HI	GCNGC	4 cut(s)	495, 515, 594, 636
Fsp4HI	GCNGC	4 cut(s)	495, 515, 594, 636
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	495, 515, 594, 636
GsuI	CTGGAG	2 cut(s)	276, 632
HaeIII	GGCC	2 cut(s)	575, 593
HapII	CCGG	7 cut(s)	419, 467, 473, 544, 569, 576, 597
HgaI	GACGC	1 cut(s)	500
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	3 cut(s)	14, 120, 391
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	265, 300
HpaII	CCGG	7 cut(s)	419, 467, 473, 544, 569, 576, 597
HphI	GGTGA	2 cut(s)	469, 538
Hpy188I	TCNGA	1 cut(s)	453
Hpy188III	TCNNGA	8 cut(s)	11, 128, 297, 304, 388, 409, 569, 603
HpyAV	CCTTC	4 cut(s)	214, 371, 376, 526
HpyCH4III	ACNGT	3 cut(s)	70, 229, 406
HpyCH4V	TGCA	4 cut(s)	111, 273, 497, 517
HpyF3I	CTNAG	1 cut(s)	334
Hsp92II	CATG	3 cut(s)	14, 120, 391
HspAI	GCGC	1 cut(s)	185
Kpn2I	TCCGGA	1 cut(s)	568
Kzo9I	GATC	3 cut(s)	121, 194, 620
Lsp1109I	GCAGC	2 cut(s)	481, 501
LweI	GCATC	2 cut(s)	381, 405
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	3 cut(s)	123, 196, 622
MboI	GATC	3 cut(s)	121, 194, 620
MboII	GAAGA	4 cut(s)	67, 344, 424, 615
MflI	RGATCY	1 cut(s)	620
MluCI	AATT	6 cut(s)	92, 157, 290, 316, 437, 461
MnlI	CCTC	5 cut(s)	514, 522, 544, 565, 581
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	2 cut(s)	102, 655
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	7 cut(s)	419, 467, 473, 544, 569, 576, 597
MspR9I	CCNGG	2 cut(s)	474, 545
Mva1269I	GAATGC	1 cut(s)	187
MvnI	CGCG	1 cut(s)	187
NciI	CCSGG	2 cut(s)	474, 545
NdeII	GATC	3 cut(s)	121, 194, 620
NlaIII	CATG	3 cut(s)	14, 120, 391
NlaIV	GGNNCC	3 cut(s)	450, 471, 592
NmuCI	GTSAC	1 cut(s)	167
PagI	TCATGA	2 cut(s)	10, 387
PaqCI	CACCTGC	1 cut(s)	488
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	265, 300
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	4 cut(s)	496, 516, 595, 637
PshBI	ATTAAT	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	450, 471, 592
PspPI	GGNCC	1 cut(s)	591
PstI	CTGCAG	2 cut(s)	499, 519
PsuI	RGATCY	1 cut(s)	620
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	102, 655
SatI	GCNGC	4 cut(s)	495, 515, 594, 636
Sau3AI	GATC	3 cut(s)	121, 194, 620
Sau96I	GGNCC	1 cut(s)	591
ScrFI	CCNGG	2 cut(s)	474, 545
SetI	ASST	8 cut(s)	19, 116, 382, 450, 502, 525, 555, 632
SfaNI	GCATC	2 cut(s)	381, 405
SfcI	CTRYAG	2 cut(s)	495, 515
SmiMI	CAYNNNNRTG	1 cut(s)	318
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	6 cut(s)	92, 157, 290, 316, 437, 461
SsiI	CCGC	3 cut(s)	187, 594, 635
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	472, 543
TaaI	ACNGT	3 cut(s)	70, 229, 406
TaqI	TCGA	3 cut(s)	285, 369, 505
TasI	AATT	6 cut(s)	92, 157, 290, 316, 437, 461
TauI	GCSGC	2 cut(s)	596, 638
TfiI	GAWTC	2 cut(s)	265, 300
Tru1I	TTAA	2 cut(s)	102, 655
Tru9I	TTAA	2 cut(s)	102, 655
TscAI	CASTG	2 cut(s)	52, 176
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	2 cut(s)	494, 514
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	27, 302, 376, 390
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	2 cut(s)	52, 176
Van91I	CCANNNNNTGG	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	4 cut(s)	92, 290, 437, 461
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.