Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000573.1

Orthogroup ID

OG0001631

Physical Location & Seq

Genomic Coordinates Forward (+)

75305 .. 77466

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000573.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggcgctgagctctctccgccttcaccgaacactaggcagcctctccaccctccatactgttcttcctatcctctactccagtcccccaacacctatatcgtctactcagtcctggacctttatccaatctcggccttttggctttttgtatggcagaaagggtggggttacaagcagcggctccttgtcatggattttcggcaagacccaaagccttggcctgaggagatgggcaaatatggctttcttagcaactgctgaagtttgtgatacaaatacaactcttttgggaagtggagacctgcgtgtcctgccaccaatatttcagatgtatggacaaagtcgagcattctcaggccccatttccactgttaaggtttttgaggataacgttttagttagagagcttctcggaaccagaggcgagggaagagttttagttattgatgggggaggaagcatgagatgtgctctagttggagggaacttgggacagttggctcaaaacatgggatgggcagggattgtgataaatggctgcattagagatgtagatgagatcaatggatgtgatattggggtgagagctttggcatctcatcccctgaagtccaacaaacgaggccatggcgataaacatgttccgatcaacattgcaggaaccttgatccgcgaaggggaatggttgtatgctgacagtgatggcatccttatctcaacatctgaactgtctatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RraA-like

Protein Analysis

246

Amino Acids

26.37

Weight (kDa)

9.02

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56260 AT5G56260 AT5G56260 AT5G56260 AT5G56260
fragaria_vesca	FvH4_3g40272 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390
malus_domestica	MD03G1044600.v1.1 MD03G1044900.v1.1 MD03G1045200.v1.1 MD03G1160400.v1.1 MD11G1047500.v1.1
prunus_persica	Prupe.6G036500_v2.0.a1 Prupe.6G036500_v2.0.a1 Prupe.6G036700_v2.0.a1
pyrus_communis	pycom03g03450 pycom11g03860
rosa_chinensis	RchiOBHm_Chr5g0074321 RchiOBHm_Chr5g0074341 RchiOBHm_Chr6g0297871
rosa_laevigata	RLG00000036312 RLG00000036469 RLG00000036470
rosa_multiflora	Rmu_sc0000573.1_g000019 Rmu_sc0000573.1_g000025 Rmu_sc0004706.1_g000018 Rmu_sc0011097.1_g000013
rosa_roxburghii	Rroxscaffold_1G00007180 Rroxscaffold_7G00170130
rosa_rugosa	Rorug05G0430500 Rorug06G0276200.1 Rorug06G0276300
rosa_samantha	Rh5AG475600 Rh5AG488100 Rh5AG488200 Rh5BG508800 Rh5CG532700 Rh5CG532800 Rh5DG521500 Rh6AG386800 Rh6BG395400 Rh6CG401200 Rh6DG387500
rosa_wichuraiana	Rw5G045270 Rw5G045280 Rw6G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	104
AccII	CGCG	1 cut(s)	675
AciI	CCGC	3 cut(s)	19, 180, 673
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	1 cut(s)	664
AcuI	CTGAAG	2 cut(s)	282, 629
AfiI	CCNNNNNNNGG	2 cut(s)	192, 679
AflIII	ACRYGT	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	3 cut(s)	12, 409, 590
AluI	AGCT	3 cut(s)	12, 409, 590
Alw21I	GWGCWC	2 cut(s)	14, 475
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	664
AoxI	GGCC	4 cut(s)	134, 220, 358, 625
ApeKI	GCWGC	3 cut(s)	39, 177, 540
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	117, 359
AsuHPI	GGTGA	2 cut(s)	17, 595
AvaII	GGWCC	1 cut(s)	117
AxyI	CCTNAGG	1 cut(s)	224
BanII	GRGCYC	1 cut(s)	14
Bbv12I	GWGCWC	2 cut(s)	14, 475
BbvI	GCAGC	3 cut(s)	51, 189, 527
BccI	CCATC	4 cut(s)	225, 443, 510, 698
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	35, 476
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	4 cut(s)	40, 178, 181, 541
BlpI	GCTNAGC	1 cut(s)	8
BlsI	GCNGC	4 cut(s)	41, 179, 182, 542
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	2 cut(s)	117, 359
BmiI	GGNNCC	4 cut(s)	184, 361, 418, 664
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	2 cut(s)	605, 717
BplI	GAGNNNNNCTC	4 cut(s)	396, 428, 457, 489
BpmI	CTGGAG	1 cut(s)	64
Bpu1102I	GCTNAGC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	217, 628
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 679
Bse1I	ACTGG	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	224
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	217, 628
BseGI	GGATG	4 cut(s)	521, 575, 601, 708
BseLI	CCNNNNNNNGG	2 cut(s)	192, 679
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	3 cut(s)	122, 215, 369
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	241
BseXI	GCAGC	3 cut(s)	51, 189, 527
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	4 cut(s)	136, 222, 360, 627
BsiHKAI	GWGCWC	2 cut(s)	14, 475
BslFI	GGGAC	2 cut(s)	69, 507
BslI	CCNNNNNNNGG	2 cut(s)	192, 679
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	69, 507
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	136, 222, 360, 627
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	14, 475
Bsp143I	GATC	3 cut(s)	561, 648, 669
Bsp1720I	GCTNAGC	1 cut(s)	8
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	3 cut(s)	19, 180, 673
BspANI	GGCC	4 cut(s)	136, 222, 360, 627
BspCNI	CTCAG	3 cut(s)	121, 216, 368
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	4 cut(s)	184, 361, 418, 664
BspMI	ACCTGC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	664
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	2 cut(s)	217, 628
BssMI	GATC	3 cut(s)	561, 648, 669
BssT1I	CCWWGG	2 cut(s)	217, 628
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	5 cut(s)	61, 373, 498, 701, 732
Bst6I	CTCTTC	1 cut(s)	427
BstDEI	CTNAG	5 cut(s)	8, 108, 224, 250, 355
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	4 cut(s)	521, 575, 601, 708
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	564, 651, 672
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	561, 648, 669
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 242, 251, 313
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	3 cut(s)	51, 189, 527
BstXI	CCANNNNNNTGG	1 cut(s)	218
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	4 cut(s)	136, 222, 360, 627
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	521, 575, 601, 708
BtsIMutI	CAGTG	2 cut(s)	369, 706
BveI	ACCTGC	1 cut(s)	312
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	117, 359
CviAII	CATG	5 cut(s)	192, 463, 511, 629, 641
DdeI	CTNAG	5 cut(s)	8, 108, 224, 250, 355
DpnI	GATC	3 cut(s)	563, 650, 671
DpnII	GATC	3 cut(s)	561, 648, 669
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
EciI	GGCGGA	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	217, 628
Eco24I	GRGCYC	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	12
Eco57I	CTGAAG	2 cut(s)	282, 629
Eco81I	CCTNAGG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	12
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	2 cut(s)	217, 628
EcoT38I	GRGCYC	1 cut(s)	14
ErhI	CCWWGG	2 cut(s)	217, 628
FaeI	CATG	5 cut(s)	195, 466, 514, 632, 644
FaqI	GGGAC	2 cut(s)	69, 507
FatI	CATG	5 cut(s)	191, 462, 510, 628, 640
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	4 cut(s)	40, 178, 181, 541
FokI	GGATG	4 cut(s)	528, 582, 588, 695
FriOI	GRGCYC	1 cut(s)	14
Fsp4HI	GCNGC	4 cut(s)	40, 178, 181, 541
FspBI	CTAG	2 cut(s)	35, 476
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	4 cut(s)	40, 178, 181, 541
GsuI	CTGGAG	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	136, 222, 360, 627
HhaI	GCGC	1 cut(s)	7
Hin1II	CATG	5 cut(s)	195, 466, 514, 632, 644
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HphI	GGTGA	2 cut(s)	17, 595
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	4 cut(s)	330, 416, 648, 727
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	32, 671
HpyCH4III	ACNGT	5 cut(s)	61, 373, 498, 701, 732
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	2 cut(s)	543, 659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 242, 251, 313
HpyF3I	CTNAG	5 cut(s)	8, 108, 224, 250, 355
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	195, 466, 514, 632, 644
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	561, 648, 669
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	3 cut(s)	51, 189, 527
LweI	GCATC	2 cut(s)	605, 717
MaeI	CTAG	2 cut(s)	35, 476
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	3 cut(s)	563, 650, 671
MboI	GATC	3 cut(s)	561, 648, 669
MboII	GAAGA	2 cut(s)	56, 444
MhlI	GDGCHC	2 cut(s)	14, 475
MmeI	TCCRAC	2 cut(s)	460, 639
MseI	TTAA	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	18, 242, 251, 313
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	3 cut(s)	561, 648, 669
NlaIII	CATG	5 cut(s)	195, 466, 514, 632, 644
NlaIV	GGNNCC	4 cut(s)	184, 361, 418, 664
NmeAIII	GCCGAG	1 cut(s)	112
NspI	RCATGY	1 cut(s)	644
PciI	ACATGT	1 cut(s)	640
PctI	GAATGC	1 cut(s)	350
PflFI	GACNNNGTC	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	41, 179, 182, 542
PscI	ACATGT	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	14
Psp1406I	AACGTT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	4 cut(s)	184, 361, 418, 664
PspPI	GGNCC	2 cut(s)	117, 359
PsyI	GACNNNGTC	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	40, 178, 181, 541
Sau3AI	GATC	3 cut(s)	561, 648, 669
Sau96I	GGNCC	2 cut(s)	117, 359
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	14, 475
SetI	ASST	9 cut(s)	14, 97, 122, 306, 381, 396, 411, 592, 668
SfaNI	GCATC	2 cut(s)	605, 717
SinI	GGWCC	1 cut(s)	117
SsiI	CCGC	3 cut(s)	19, 180, 673
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	2 cut(s)	35, 476
SstI	GAGCTC	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	2 cut(s)	217, 628
TaaI	ACNGT	5 cut(s)	61, 373, 498, 701, 732
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	346
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	376, 706
TseI	GCWGC	3 cut(s)	39, 177, 540
TspRI	CASTG	2 cut(s)	376, 706
Tth111I	GACNNNGTC	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	117
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	104
XspI	CTAG	2 cut(s)	35, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.