Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011097.1

Orthogroup ID

OG0001631

Physical Location & Seq

Genomic Coordinates Forward (+)

52761 .. 53168

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011097.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgatcgattcagttccggctcctgaagtcgatcatggatattcatacaccactctcaccgtagaaaaaatatgcagcatcgtaaatttcaagctcaagacgcgcgagatgtattttttctggaagacgctttttgaagatatcttcaagcgttacgagctcactggcattgtcaacggcagcgaaccctgtcccgatcggttcctcattcataagaacggaaacctcacgaatcaagtcaatccggccttcgatgtttggcatgagaaggatcagaggatcataacgtggatcaaatcgactctttccgaaatggcagcaaaatttctgcaaacgacagacataatttatttgaagcttcaattggcaggccatacagtaagatcctttatcacaataaagttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RraA-like

Protein Analysis

135

Amino Acids

15.76

Weight (kDa)

7.78

Isoelectric Point (pI)

20.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56260 AT5G56260 AT5G56260 AT5G56260 AT5G56260
fragaria_vesca	FvH4_3g40272 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390
malus_domestica	MD03G1044600.v1.1 MD03G1044900.v1.1 MD03G1045200.v1.1 MD03G1160400.v1.1 MD11G1047500.v1.1
prunus_persica	Prupe.6G036500_v2.0.a1 Prupe.6G036500_v2.0.a1 Prupe.6G036700_v2.0.a1
pyrus_communis	pycom03g03450 pycom11g03860
rosa_chinensis	RchiOBHm_Chr5g0074321 RchiOBHm_Chr5g0074341 RchiOBHm_Chr6g0297871
rosa_laevigata	RLG00000036312 RLG00000036469 RLG00000036470
rosa_multiflora	Rmu_sc0000573.1_g000019 Rmu_sc0000573.1_g000025 Rmu_sc0004706.1_g000018 Rmu_sc0011097.1_g000013
rosa_roxburghii	Rroxscaffold_1G00007180 Rroxscaffold_7G00170130
rosa_rugosa	Rorug05G0430500 Rorug06G0276200.1 Rorug06G0276300
rosa_samantha	Rh5AG475600 Rh5AG488100 Rh5AG488200 Rh5BG508800 Rh5CG532700 Rh5CG532800 Rh5DG521500 Rh6AG386800 Rh6BG395400 Rh6CG401200 Rh6DG387500
rosa_wichuraiana	Rw5G045270 Rw5G045280 Rw6G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	103, 105
AclWI	GGATC	4 cut(s)	279, 287, 299, 378
AcsI	RAATTY	2 cut(s)	85, 323
AcuI	CTGAAG	1 cut(s)	45
AgsI	TTSAA	5 cut(s)	91, 137, 148, 355, 362
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	3 cut(s)	94, 160, 358
AluI	AGCT	3 cut(s)	94, 160, 358
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	4 cut(s)	279, 287, 299, 378
AoxI	GGCC	2 cut(s)	246, 370
ApeKI	GCWGC	3 cut(s)	75, 180, 317
ApoI	RAATTY	2 cut(s)	85, 323
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	87, 192, 329
BceAI	ACGGC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	76, 181, 318
BlsI	GCNGC	3 cut(s)	77, 182, 319
BmiI	GGNNCC	2 cut(s)	21, 203
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	87, 192, 329
Bsh1236I	CGCG	2 cut(s)	103, 105
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	2 cut(s)	248, 372
BshVI	ATCGAT	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	17, 245
BslFI	GGGAC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	248, 372
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
BspANI	GGCC	2 cut(s)	248, 372
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	2 cut(s)	103, 105
BspLI	GGNNCC	2 cut(s)	21, 203
BspPI	GGATC	4 cut(s)	279, 287, 299, 378
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
Bst4CI	ACNGT	2 cut(s)	61, 379
BstC8I	GCNNGC	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	103, 105
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	7 cut(s)	6, 34, 199, 274, 282, 294, 386
BstMBI	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 157
BstUI	CGCG	2 cut(s)	103, 105
BstV1I	GCAGC	3 cut(s)	87, 192, 329
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	248, 372
BsuTUI	ATCGAT	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	370
CfoI	GCGC	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	6
CseI	GACGC	2 cut(s)	109, 136
CviAII	CATG	2 cut(s)	35, 263
CviJI	RGCY	6 cut(s)	20, 94, 160, 248, 358, 372
CviKI_1	RGCY	6 cut(s)	20, 94, 160, 248, 358, 372
DpnI	GATC	7 cut(s)	5, 33, 198, 273, 281, 293, 385
DpnII	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	160
EcoRV	GATATC	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	2 cut(s)	38, 266
FaiI	YATR	8 cut(s)	36, 46, 73, 213, 264, 284, 344, 375
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	2 cut(s)	34, 262
Fnu4HI	GCNGC	3 cut(s)	76, 181, 318
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	76, 181, 318
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	3 cut(s)	76, 181, 318
HaeIII	GGCC	2 cut(s)	248, 372
HapII	CCGG	2 cut(s)	17, 245
HgaI	GACGC	2 cut(s)	109, 136
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	38, 266
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	3 cut(s)	8, 232, 301
HpaII	CCGG	2 cut(s)	17, 245
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	2 cut(s)	276, 310
Hpy188III	TCNNGA	5 cut(s)	23, 97, 121, 194, 229
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	259, 262
HpyCH4III	ACNGT	2 cut(s)	61, 379
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	75, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 157
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	38, 266
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	7 cut(s)	30, 36, 106, 150, 202, 258, 354
Lsp1109I	GCAGC	3 cut(s)	87, 192, 329
LweI	GCATC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	7 cut(s)	5, 33, 198, 273, 281, 293, 385
MboI	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
MboII	GAAGA	3 cut(s)	136, 136, 149
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	4 cut(s)	85, 323, 345, 362
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	3 cut(s)	215, 236, 270
MspI	CCGG	2 cut(s)	17, 245
MunI	CAATTG	1 cut(s)	362
MvnI	CGCG	2 cut(s)	103, 105
MwoI	GCNNNNNNNGC	2 cut(s)	100, 157
NdeII	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
NlaIII	CATG	2 cut(s)	38, 266
NlaIV	GGNNCC	2 cut(s)	21, 203
PfeI	GAWTC	2 cut(s)	8, 232
PkrI	GCNGC	3 cut(s)	77, 182, 319
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	21, 203
PsuI	RGATCY	1 cut(s)	383
PvuI	CGATCG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	162
SatI	GCNGC	3 cut(s)	76, 181, 318
Sau3AI	GATC	7 cut(s)	3, 31, 196, 271, 279, 291, 383
SchI	GAGTC	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	5 cut(s)	96, 162, 228, 290, 360
SfaNI	GCATC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	85, 323, 345, 362
SstI	GAGCTC	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	61, 379
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	4 cut(s)	6, 30, 252, 299
TasI	AATT	4 cut(s)	85, 323, 345, 362
TfiI	GAWTC	2 cut(s)	8, 232
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	3 cut(s)	75, 180, 317
TspDTI	ATGAA	2 cut(s)	33, 200
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	85, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.