Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004706.1

Orthogroup ID

OG0001631

Physical Location & Seq

Genomic Coordinates Reverse (-)

61191 .. 61691

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004706.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atggctttcttagcaactgctgaactttgtgatacaaatacagctcttttgggaagtggagatttgcgtgtcctgccaccaatatttcagatgtatggacaacgtcgagcattctcaggccccatttccactgttaaggtttttgaggacaacgttttggttagagagcttgtcggaaccagagtcgagggaagagttttagttattgatgggggaggaagcttgagaagtgctttgcttggagggattttgtcacagttggctcaaaacatgggatgggcagggattgtgataaatggctgcattagagatgtagatgagatcaatggatgtgatattggggtgagagctttggcatctcatcccgtgaagcccggcaaaagaggccatggcaataagcatgttccgatcaacattgcaggaaccttgatccgcgaaggggaatggttgtatgctgatagtgatggcatccttgtctccacatctgaattgtctatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RraA-like

Protein Analysis

166

Amino Acids

17.61

Weight (kDa)

5.89

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001631)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56260 AT5G56260 AT5G56260 AT5G56260 AT5G56260
fragaria_vesca	FvH4_3g40272 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390 FvH4_3g41390
malus_domestica	MD03G1044600.v1.1 MD03G1044900.v1.1 MD03G1045200.v1.1 MD03G1160400.v1.1 MD11G1047500.v1.1
prunus_persica	Prupe.6G036500_v2.0.a1 Prupe.6G036500_v2.0.a1 Prupe.6G036700_v2.0.a1
pyrus_communis	pycom03g03450 pycom11g03860
rosa_chinensis	RchiOBHm_Chr5g0074321 RchiOBHm_Chr5g0074341 RchiOBHm_Chr6g0297871
rosa_laevigata	RLG00000036312 RLG00000036469 RLG00000036470
rosa_multiflora	Rmu_sc0000573.1_g000019 Rmu_sc0000573.1_g000025 Rmu_sc0004706.1_g000018 Rmu_sc0011097.1_g000013
rosa_roxburghii	Rroxscaffold_1G00007180 Rroxscaffold_7G00170130
rosa_rugosa	Rorug05G0430500 Rorug06G0276200.1 Rorug06G0276300
rosa_samantha	Rh5AG475600 Rh5AG488100 Rh5AG488200 Rh5BG508800 Rh5CG532700 Rh5CG532800 Rh5DG521500 Rh6AG386800 Rh6BG395400 Rh6CG401200 Rh6DG387500
rosa_wichuraiana	Rw5G045270 Rw5G045280 Rw6G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	435
AciI	CCGC	1 cut(s)	433
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	439
AluBI	AGCT	4 cut(s)	44, 169, 222, 350
AluI	AGCT	4 cut(s)	44, 169, 222, 350
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	1 cut(s)	424
AoxI	GGCC	2 cut(s)	118, 385
ApeKI	GCWGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	3 cut(s)	203, 270, 458
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	481
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	121, 178, 424
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	365, 477
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	4 cut(s)	281, 335, 361, 468
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	120, 387
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	120, 387
Bsp143I	GATC	3 cut(s)	321, 408, 429
Bsp19I	CCATGG	1 cut(s)	388
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	120, 387
BspCNI	CTCAG	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	3 cut(s)	121, 178, 424
BspPI	GGATC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	414
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	321, 408, 429
BssT1I	CCWWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	133, 258
Bst6I	CTCTTC	1 cut(s)	187
BstDEI	CTNAG	2 cut(s)	10, 115
BstDSI	CCRYGG	1 cut(s)	388
BstF5I	GGATG	4 cut(s)	281, 335, 361, 468
BstFNI	CGCG	1 cut(s)	435
BstKTI	GATC	3 cut(s)	324, 411, 432
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	321, 408, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 73, 384
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	120, 387
BtgI	CCRYGG	1 cut(s)	388
BtsCI	GGATG	4 cut(s)	281, 335, 361, 468
BtsIMutI	CAGTG	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	3 cut(s)	271, 389, 401
DdeI	CTNAG	2 cut(s)	10, 115
DpnI	GATC	3 cut(s)	323, 410, 431
DpnII	GATC	3 cut(s)	321, 408, 429
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	3 cut(s)	274, 392, 404
FaiI	YATR	5 cut(s)	96, 272, 390, 402, 453
FatI	CATG	3 cut(s)	270, 388, 400
Fnu4HI	GCNGC	1 cut(s)	301
FokI	GGATG	4 cut(s)	288, 342, 348, 455
Fsp4HI	GCNGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	120, 387
HapII	CCGG	1 cut(s)	375
Hin1II	CATG	3 cut(s)	274, 392, 404
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	355
Hpy188I	TCNGA	5 cut(s)	90, 176, 408, 487, 500
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	2 cut(s)	133, 258
HpyCH4IV	ACGT	2 cut(s)	103, 153
HpyCH4V	TGCA	2 cut(s)	303, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 73, 384
HpyF3I	CTNAG	2 cut(s)	10, 115
HpySE526I	ACGT	2 cut(s)	103, 153
Hsp92II	CATG	3 cut(s)	274, 392, 404
Kzo9I	GATC	3 cut(s)	321, 408, 429
LpnPI	CCDG	6 cut(s)	86, 102, 193, 267, 388, 405
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	2 cut(s)	365, 477
MaeII	ACGT	2 cut(s)	103, 153
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	3 cut(s)	323, 410, 431
MboI	GATC	3 cut(s)	321, 408, 429
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	139, 181, 209, 236, 377
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	11, 73, 384
NciI	CCSGG	1 cut(s)	375
NcoI	CCATGG	1 cut(s)	388
NdeII	GATC	3 cut(s)	321, 408, 429
NlaIII	CATG	3 cut(s)	274, 392, 404
NlaIV	GGNNCC	3 cut(s)	121, 178, 424
NmuCI	GTSAC	1 cut(s)	252
NspI	RCATGY	1 cut(s)	404
PctI	GAATGC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	302
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp1406I	AACGTT	1 cut(s)	153
PspN4I	GGNNCC	3 cut(s)	121, 178, 424
PspPI	GGNCC	1 cut(s)	119
PsyI	GACNNNGTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	3 cut(s)	321, 408, 429
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	8 cut(s)	46, 106, 141, 156, 171, 224, 352, 428
SfaNI	GCATC	2 cut(s)	365, 477
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	433
SspI	AATATT	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	133, 258
TaiI	ACGT	2 cut(s)	106, 156
TaqI	TCGA	2 cut(s)	106, 186
TasI	AATT	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	252
TseI	GCWGC	1 cut(s)	300
Tsp45I	GTSAC	1 cut(s)	252
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	102
XceI	RCATGY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.