Rroxscaffold_7G00170130

Aldolase/RraA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001631
Physical Location & Seq
Forward (+)
10590428 .. 10590829
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170130.1

Sequence Viewer

Length: 318 bp
ATGGAGCGCGTTTTCGGTCGGGTGGTGACCTTGAAGGTGTTTGAGGACAACACGTTGGTGATCGAAGCTTTGTCGAGAAAAGGGGAGGAGGGGTGTTGGTTGTGGACGGCGGAGGAAGCAGATGTGGATGAGATCAATGAATGTGAGATCGGGGTGAGAGCTTTGGCGACTTGTCCGGTGAGACCGATTAAGGGTGCGGATGGGAGTGGCCGGAAGCATGTTGATGTCAACATTGGAGGAACATGGATTCGTGATGGGGAATGGTTGTATGCGGATAATGATGGCATCCTCGTCTCCACGACTAAATTGTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RraA-like

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

4.64

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RraA-like PF03737 41 - 98 2.2e-12 Aldolase/RraA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 307
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 110, 197, 272
AcoI YGGCCR 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 2 cut(s) 68, 161
AluI AGCT 2 cut(s) 68, 161
Alw26I GTCTC 2 cut(s) 175, 298
AoxI GGCC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 9
AsuHPI GGTGA 4 cut(s) 37, 70, 166, 190
BccI CCATC 3 cut(s) 194, 248, 275
BceAI ACGGC 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 175, 298
BmsI GCATC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseGI GGATG 3 cut(s) 133, 205, 285
BseLI CCNNNNNNNGG 1 cut(s) 191
BseRI GAGGAG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 176, 211
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 175, 298
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 175
Bsp143I GATC 3 cut(s) 60, 132, 147
BspACI CCGC 3 cut(s) 110, 197, 272
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 175
BssMI GATC 3 cut(s) 60, 132, 147
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 3 cut(s) 133, 205, 285
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 63, 135, 150
BstMAI GTCTC 2 cut(s) 175, 298
BstMBI GATC 3 cut(s) 60, 132, 147
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 221
BstPI GGTNACC 1 cut(s) 25
BstUI CGCG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 3 cut(s) 133, 205, 285
CfoI GCGC 1 cut(s) 9
CviAII CATG 2 cut(s) 218, 243
CviJI RGCY 3 cut(s) 68, 161, 210
CviKI_1 RGCY 3 cut(s) 68, 161, 210
DpnI GATC 3 cut(s) 62, 134, 149
DpnII GATC 3 cut(s) 60, 132, 147
DrdI GACNNNNNNGTC 1 cut(s) 307
DseDI GACNNNNNNGTC 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 208
EciI GGCGGA 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 221, 246
FaiI YATR 3 cut(s) 219, 244, 270
FatI CATG 2 cut(s) 217, 242
FokI GGATG 3 cut(s) 140, 212, 272
GlaI GCGC 1 cut(s) 8
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 176, 211
HhaI GCGC 1 cut(s) 9
Hin1II CATG 2 cut(s) 221, 246
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 176, 211
HphI GGTGA 4 cut(s) 37, 70, 166, 190
Hpy166II GTNNAC 2 cut(s) 105, 229
Hpy188III TCNNGA 2 cut(s) 75, 251
Hpy8I GTNNAC 2 cut(s) 105, 229
HpyAV CCTTC 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 221, 246
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 60, 132, 147
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 189, 224
LweI GCATC 1 cut(s) 294
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 25
MalI GATC 3 cut(s) 62, 134, 149
MboI GATC 3 cut(s) 60, 132, 147
MluCI AATT 2 cut(s) 305, 312
MnlI CCTC 6 cut(s) 37, 79, 82, 106, 230, 299
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 2 cut(s) 56, 222
MspI CCGG 2 cut(s) 176, 211
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 3 cut(s) 60, 132, 147
NlaIII CATG 2 cut(s) 221, 246
NmuCI GTSAC 1 cut(s) 25
NspI RCATGY 1 cut(s) 221
OliI CACNNNNGTG 1 cut(s) 56
PfeI GAWTC 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 25
RseI CAYNNNNRTG 2 cut(s) 56, 222
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 3 cut(s) 60, 132, 147
SetI ASST 5 cut(s) 32, 39, 56, 70, 163
SfaNI GCATC 1 cut(s) 294
SmiMI CAYNNNNRTG 2 cut(s) 56, 222
Sse9I AATT 2 cut(s) 305, 312
SsiI CCGC 3 cut(s) 110, 197, 272
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 63, 74
TaqII GACCGA 2 cut(s) 5, 199
TasI AATT 2 cut(s) 305, 312
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 153
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.