Rmu_sc0000741.1_g000014

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000741.1
OG0002353
Physical Location & Seq
Forward (+)
78842 .. 79237
396 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
atgagctcggcagataagttgttcttgaatggaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaagatggagataatctattcgagttcgggccgctgaaaggcagagatctgaggatgagggacaagtctctgtggcggagaacgagatccatatctccgatgagaaacatgccctttggctgcgagatttacggcgaaaacgaaatcagtaataatgactgttgctttgcgaaagatctgaatgagggtgatttggggaagaagaagaagaagctagagaatagtgaggaggaggaggaagaagaagttgggaacttggagactactccttcggttttggcttcgtcttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

5.06

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 110 1.3e-10 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 2 cut(s) 134, 178
AclWI GGATC 2 cut(s) 31, 183
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 63, 75
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 4 cut(s) 6, 52, 92, 316
AluI AGCT 4 cut(s) 6, 52, 92, 316
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 174, 356
AlwI GGATC 2 cut(s) 31, 183
AoxI GGCC 2 cut(s) 41, 131
ApeKI GCWGC 1 cut(s) 222
ArsI GACNNNNNNTTYG 4 cut(s) 251, 283, 355, 387
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 42, 131
AsuHPI GGTGA 1 cut(s) 302
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 67, 250
BciT130I CCWGG 2 cut(s) 65, 77
BcoDI GTCTC 2 cut(s) 174, 356
BfaI CTAG 1 cut(s) 317
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 2 cut(s) 148, 277
BisI GCNGC 2 cut(s) 134, 223
BlsI GCNGC 2 cut(s) 135, 224
Bme1390I CCNGG 2 cut(s) 65, 77
BmgT120I GGNCC 2 cut(s) 42, 131
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 65, 77
BpiI GAAGAC 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 193
BseBI CCWGG 2 cut(s) 65, 77
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 3 cut(s) 344, 347, 350
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 43, 133
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 40
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 174, 356
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 2 cut(s) 43, 133
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 4 cut(s) 36, 148, 188, 277
BspACI CCGC 2 cut(s) 134, 178
BspANI GGCC 2 cut(s) 43, 133
BspCNI CTCAG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 2 cut(s) 31, 183
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 36, 148, 188, 277
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 65, 77
Bst4CI ACNGT 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 4 cut(s) 39, 151, 191, 280
BstMAI GTCTC 2 cut(s) 174, 356
BstMBI GATC 4 cut(s) 36, 148, 188, 277
BstMWI GCNNNNNNNGC 2 cut(s) 49, 79
BstNI CCWGG 2 cut(s) 65, 77
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 63, 75
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 4 cut(s) 36, 148, 188, 277
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 4 cut(s) 36, 148, 188, 277
BsuRI GGCC 2 cut(s) 43, 133
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 90
CciI TCATGA 1 cut(s) 392
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 42, 131
CviAII CATG 3 cut(s) 46, 211, 393
CviJI RGCY 9 cut(s) 6, 43, 52, 73, 92, 133, 222, 316, 383
CviKI_1 RGCY 9 cut(s) 6, 43, 52, 73, 92, 133, 222, 316, 383
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 81
DpnI GATC 4 cut(s) 38, 150, 190, 279
DpnII GATC 4 cut(s) 36, 148, 188, 277
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 63, 75
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 3 cut(s) 49, 214, 396
FaiI YATR 4 cut(s) 47, 194, 212, 394
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 45, 210, 392
Fnu4HI GCNGC 2 cut(s) 134, 223
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 134, 223
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 134, 223
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 2 cut(s) 43, 133
HapII CCGG 1 cut(s) 40
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 49, 214, 396
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 40
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 153, 201, 282
Hpy188III TCNNGA 2 cut(s) 25, 393
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 79
HpyF3I CTNAG 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 49, 214, 396
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
Kzo9I GATC 4 cut(s) 36, 148, 188, 277
LpnPI CCDG 5 cut(s) 50, 53, 62, 77, 89
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 1 cut(s) 317
MalI GATC 4 cut(s) 38, 150, 190, 279
MboI GATC 4 cut(s) 36, 148, 188, 277
MboII GAAGA 8 cut(s) 116, 313, 316, 319, 322, 353, 356, 381
MflI RGATCY 4 cut(s) 36, 148, 188, 277
MhlI GDGCHC 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 80
MnlI CCTC 8 cut(s) 94, 147, 153, 280, 322, 325, 328, 331
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 65, 77
MvaI CCWGG 2 cut(s) 65, 77
MwoI GCNNNNNNNGC 2 cut(s) 49, 79
NarI GGCGCC 1 cut(s) 80
NdeII GATC 4 cut(s) 36, 148, 188, 277
NlaIII CATG 3 cut(s) 49, 214, 396
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 214
PagI TCATGA 1 cut(s) 392
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PkrI GCNGC 2 cut(s) 135, 224
PluTI GGCGCC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 63, 75
PspGI CCWGG 2 cut(s) 63, 75
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 2 cut(s) 42, 131
PsuI RGATCY 4 cut(s) 36, 148, 188, 277
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 134, 223
Sau3AI GATC 4 cut(s) 36, 148, 188, 277
Sau96I GGNCC 2 cut(s) 42, 131
ScrFI CCNGG 2 cut(s) 65, 77
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 54, 66, 94, 318
SfoI GGCGCC 1 cut(s) 81
SsiI CCGC 2 cut(s) 134, 178
SspDI GGCGCC 1 cut(s) 79
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 63, 75
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 123
TauI GCSGC 1 cut(s) 136
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 62, 381
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.