Rmu_sc0001232.1_g000013

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001232.1
OG0002977
Physical Location & Seq
Forward (+)
47126 .. 48022
897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
atgcagagcactgacgagttaaagaacgagcttatgtactcaagtcttgaactagaatcagtaaaatgcaaagttaccgagagtcaagaaaatgtgaccaacttgctcaatctgttagaggttgcatacaaagaaagagatgaagccagagaccagttgaagaaaatctttgagaagatgaaccccaattgtactccaattgatcaactgccaaatcatgtagtccagtctgttagcccccaaattttgatgccgacgactacaaaagaaaacttaagcttaactgaatccaacagtccctcttctgttgattccttattcgatcatgcagtttcttcaccagagtttccaagcatcattatgcctgattcaagcaccatgggttttcttaatgtgaagcagcctaatgcggttcaacattttaatttgggcactactaatgttaccatgagtgcccaaactgatacagcttctgaaatagttaacgattttgctaaaggaaagactttacctcagaaagggaaactcatgcaagctgtgaaggaagctggtccattgcttcggacgcttcttattgctggtcccccattgccccagtggcgaaacccccctccccctttgcaacagcctttcaaaatcccacccgttgctccgatcaacggttgtacgacagcttctcctctaagctttaatcagaaaccatttgccatttcaaatcctacaactagctatttcaatgtggctcatacatcttcagctgccaatgccatgttgagtttcaacactgtccttccttctgctggtgtttcatgcttcaataactcaagaatgatggagacttcaaactctggtttcgaccaccaaatcccatttgccaagcggcgaaggcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

298

Amino Acids

32.75

Weight (kDa)

6.53

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 2 - 223 4.2e-39 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 410, 880
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 3 cut(s) 38, 193, 667
AfiI CCNNNNNNNGG 3 cut(s) 518, 659, 800
AflII CTTAAG 1 cut(s) 274
AluBI AGCT 9 cut(s) 31, 279, 470, 536, 548, 674, 687, 729, 758
AluI AGCT 9 cut(s) 31, 279, 470, 536, 548, 674, 687, 729, 758
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 2 cut(s) 144, 830
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 400, 758
ApoI RAATTY 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 551, 581
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 2 cut(s) 551, 581
BaeGI GKGCMC 2 cut(s) 434, 457
BarI GAAGNNNNNNTAC 2 cut(s) 658, 690
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 412, 745
BccI CCATC 1 cut(s) 826
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 144, 830
BfaI CTAG 2 cut(s) 53, 726
BfrI CTTAAG 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 598
BisI GCNGC 3 cut(s) 401, 759, 881
BlsI GCNGC 3 cut(s) 402, 760, 882
Bme18I GGWCC 2 cut(s) 551, 581
BmgT120I GGNCC 2 cut(s) 551, 581
BmiI GGNNCC 1 cut(s) 583
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 2 cut(s) 240, 363
BmuI ACTGGG 1 cut(s) 589
BpuEI CTTGAG 2 cut(s) 25, 808
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 661, 691
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 659, 800
Bse1I ACTGG 3 cut(s) 154, 226, 595
Bse3DI GCAATG 2 cut(s) 554, 587
BseDI CCNNGG 1 cut(s) 378
BseLI CCNNNNNNNGG 3 cut(s) 518, 659, 800
BseMI GCAATG 2 cut(s) 554, 587
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 3 cut(s) 154, 226, 595
BseRI GAGGAG 1 cut(s) 669
BseSI GKGCMC 2 cut(s) 434, 457
BseXI GCAGC 2 cut(s) 412, 745
BsiHKAI GWGCWC 1 cut(s) 11
BslFI GGGAC 2 cut(s) 282, 567
BslI CCNNNNNNNGG 3 cut(s) 518, 659, 800
BsmAI GTCTC 2 cut(s) 144, 830
BsmFI GGGAC 2 cut(s) 282, 567
Bso31I GGTCTC 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 11, 434, 457
Bsp143I GATC 3 cut(s) 202, 322, 654
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 410, 880
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 583
BspTI CTTAAG 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 2 cut(s) 554, 587
BsrI ACTGG 3 cut(s) 154, 226, 595
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 3 cut(s) 202, 322, 654
BssT1I CCWWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 296, 662, 787
Bst6I CTCTTC 1 cut(s) 307
BstAFI CTTAAG 1 cut(s) 274
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 2 cut(s) 513, 683
BstDSI CCRYGG 1 cut(s) 378
BstENI CCTNNNNNAGG 1 cut(s) 516
BstKTI GATC 3 cut(s) 205, 325, 657
BstMAI GTCTC 2 cut(s) 144, 830
BstMBI GATC 3 cut(s) 202, 322, 654
BstMWI GCNNNNNNNGC 4 cut(s) 565, 598, 764, 886
BstSLI GKGCMC 2 cut(s) 434, 457
BstV1I GCAGC 2 cut(s) 412, 745
BtgI CCRYGG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 9, 602, 783
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 2 cut(s) 551, 581
CseI GACGC 1 cut(s) 574
Csp6I GTAC 3 cut(s) 37, 192, 666
CviAII CATG 7 cut(s) 218, 326, 379, 448, 529, 769, 810
CviQI GTAC 3 cut(s) 37, 192, 666
DdeI CTNAG 2 cut(s) 513, 683
DpnI GATC 3 cut(s) 204, 324, 656
DpnII GATC 3 cut(s) 202, 322, 654
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 551, 581
Eco57I CTGAAG 1 cut(s) 738
EcoNI CCTNNNNNAGG 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 7 cut(s) 221, 329, 382, 451, 532, 772, 813
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 282, 567
FatI CATG 7 cut(s) 217, 325, 378, 447, 528, 768, 809
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 401, 759, 881
Fsp4HI GCNGC 3 cut(s) 401, 759, 881
FspBI CTAG 2 cut(s) 53, 726
GluI GCNGC 3 cut(s) 401, 759, 881
HgaI GACGC 1 cut(s) 574
Hin1II CATG 7 cut(s) 221, 329, 382, 451, 532, 772, 813
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HindIII AAGCTT 2 cut(s) 277, 685
HinfI GANTC 5 cut(s) 56, 82, 287, 311, 368
HpaI GTTAAC 1 cut(s) 484
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 484
Hpy188I TCNGA 5 cut(s) 475, 516, 564, 654, 696
Hpy188III TCNNGA 3 cut(s) 47, 86, 825
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 535, 800, 804, 879
HpyCH4III ACNGT 3 cut(s) 296, 662, 787
HpyCH4V TGCA 6 cut(s) 4, 69, 125, 329, 532, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 565, 598, 764, 886
HpyF3I CTNAG 2 cut(s) 513, 683
Hsp92II CATG 7 cut(s) 221, 329, 382, 451, 532, 772, 813
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 202, 322, 654
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 2 cut(s) 412, 745
LweI GCATC 2 cut(s) 240, 363
MaeI CTAG 2 cut(s) 53, 726
MaeIII GTNAC 3 cut(s) 73, 94, 442
MalI GATC 3 cut(s) 204, 324, 656
MboI GATC 3 cut(s) 202, 322, 654
MboII GAAGA 5 cut(s) 172, 187, 294, 327, 744
MfeI CAATTG 2 cut(s) 187, 198
MhlI GDGCHC 3 cut(s) 11, 434, 457
MluCI AATT 4 cut(s) 187, 198, 243, 424
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 112, 310, 522, 621, 690
MseI TTAA 7 cut(s) 20, 275, 281, 390, 423, 483, 690
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 758
MspCI CTTAAG 1 cut(s) 274
MunI CAATTG 2 cut(s) 187, 198
MwoI GCNNNNNNNGC 4 cut(s) 565, 598, 764, 886
NcoI CCATGG 1 cut(s) 378
NdeII GATC 3 cut(s) 202, 322, 654
NlaIII CATG 7 cut(s) 221, 329, 382, 451, 532, 772, 813
NlaIV GGNNCC 1 cut(s) 583
NmuCI GTSAC 1 cut(s) 94
PfeI GAWTC 4 cut(s) 56, 287, 311, 368
PkrI GCNGC 3 cut(s) 402, 760, 882
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 583
PspPI GGNCC 2 cut(s) 551, 581
PstNI CAGNNNCTG 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 3 cut(s) 38, 193, 667
RsaNI GTAC 3 cut(s) 37, 192, 666
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 7 cut(s) 20, 275, 281, 390, 423, 483, 690
SatI GCNGC 3 cut(s) 401, 759, 881
Sau3AI GATC 3 cut(s) 202, 322, 654
Sau96I GGNCC 2 cut(s) 551, 581
SchI GAGTC 1 cut(s) 91
SduI GDGCHC 3 cut(s) 11, 434, 457
SfaNI GCATC 2 cut(s) 240, 363
SinI GGWCC 2 cut(s) 551, 581
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 3 cut(s) 40, 274, 823
SmoI CTYRAG 3 cut(s) 40, 274, 823
Sse9I AATT 4 cut(s) 187, 198, 243, 424
SsiI CCGC 2 cut(s) 410, 880
SspMI CTAG 2 cut(s) 53, 726
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 296, 662, 787
TaqI TCGA 2 cut(s) 321, 855
TasI AATT 4 cut(s) 187, 198, 243, 424
TatI WGTACW 2 cut(s) 36, 191
TauI GCSGC 1 cut(s) 883
TfiI GAWTC 4 cut(s) 56, 287, 311, 368
Tru1I TTAA 7 cut(s) 20, 275, 281, 390, 423, 483, 690
Tru9I TTAA 7 cut(s) 20, 275, 281, 390, 423, 483, 690
TscAI CASTG 3 cut(s) 16, 602, 790
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 2 cut(s) 400, 758
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 156, 194, 798
TspRI CASTG 3 cut(s) 16, 602, 790
Vha464I CTTAAG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 551, 581
XagI CCTNNNNNAGG 1 cut(s) 516
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 1 cut(s) 594
XspI CTAG 2 cut(s) 53, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.