Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001803.1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Reverse (-)

135145 .. 138221

Gene Structure 3077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atgggagttccagctttctatagatggctagcggagaagtatccactcgtcgtcgtcgatgtggtggaagaagaatcggttgtaatcgacgacggttcgattccggtccacaccagtaagccaaattctaacggcgagtatgacaatctgtacctcgatatgaatgggattattctcaacatcatcaaaaaccatgggattgtgcttggtaatggctgcgattgttttgattcagctcttagttattggctttggttgcatgccctgaaagggaagggaaacaggttatggttccgggcctactggcaagaattggttctggttatgatgatctctgcatatgctgcctcgacatccgacgacattgcacctgcaatttcactcacagagaatgcatcaaagcacttcaataagatgagatccaaacataatgaggatctatgcctgggaattggtgttaaacagggtggatattcgggcatgttgtataccatggacttctatagtaaagaaaatgcaagaccagatgattcaaccattgaatataatggttttaagataggtcagccttcatattttcattctcttagtcaacagtgtaagcagcagaaaagatggacccatgggtcacagagagcttctagagttgttgcttactatggcttgaaggaaccaccttataaacttgatgctttggaaccctatatgagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

237

Amino Acids

26.87

Weight (kDa)

6.16

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 64	4.3e-13	XRN 5'-3' exonuclease N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AarI	CACCTGC	1 cut(s)	379
AasI	GACNNNNNNGTC	1 cut(s)	625
Acc36I	ACCTGC	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	414, 444
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	270
AgsI	TTSAA	4 cut(s)	409, 534, 542, 667
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	3 cut(s)	14, 236, 638
AluI	AGCT	3 cut(s)	14, 236, 638
AlwI	GGATC	2 cut(s)	414, 444
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	216, 344, 604
ApoI	RAATTY	1 cut(s)	124
Asp700I	GAANNNNTTC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	106, 297, 618
AsuC2I	CCSGG	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	106, 618
BbvI	GCAGC	3 cut(s)	203, 331, 616
BccI	CCATC	2 cut(s)	18, 609
BceAI	ACGGC	1 cut(s)	148
BcgI	CGANNNNNNTGC	2 cut(s)	347, 381
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	2 cut(s)	29, 642
BfmI	CTRYAG	2 cut(s)	19, 502
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	217, 345, 605
BlsI	GCNGC	3 cut(s)	218, 346, 606
Bme1390I	CCNGG	2 cut(s)	296, 446
Bme18I	GGWCC	2 cut(s)	106, 618
BmgT120I	GGNCC	3 cut(s)	106, 297, 618
BmiI	GGNNCC	4 cut(s)	293, 620, 672, 699
BmrFI	CCNGG	2 cut(s)	296, 446
BmsI	GCATC	2 cut(s)	404, 679
BmtI	GCTAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	193, 445, 492, 622
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse1I	ACTGG	2 cut(s)	114, 308
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	4 cut(s)	193, 445, 492, 622
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	114, 308
BseXI	GCAGC	3 cut(s)	203, 331, 616
BshFI	GGCC	1 cut(s)	299
BsiSI	CCGG	2 cut(s)	104, 295
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	299
Bsp143I	GATC	3 cut(s)	330, 419, 436
Bsp19I	CCATGG	3 cut(s)	193, 492, 622
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	299
BspLI	GGNNCC	4 cut(s)	293, 620, 672, 699
BspMI	ACCTGC	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	414, 444
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	114, 308
BssECI	CCNNGG	4 cut(s)	193, 445, 492, 622
BssMI	GATC	3 cut(s)	330, 419, 436
BssNAI	GTATAC	1 cut(s)	489
BssT1I	CCWWGG	3 cut(s)	193, 492, 622
Bst1107I	GTATAC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	2 cut(s)	95, 597
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	30, 261
BstDEI	CTNAG	2 cut(s)	239, 587
BstDSI	CCRYGG	3 cut(s)	193, 492, 622
BstF5I	GGATG	1 cut(s)	353
BstKTI	GATC	3 cut(s)	333, 422, 439
BstMBI	GATC	3 cut(s)	330, 419, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 344
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	2 cut(s)	263, 484
BstSCI	CCNGG	2 cut(s)	294, 444
BstSFI	CTRYAG	2 cut(s)	19, 502
BstV1I	GCAGC	3 cut(s)	203, 331, 616
BstX2I	RGATCY	2 cut(s)	419, 436
BstYI	RGATCY	2 cut(s)	419, 436
BstZ17I	GTATAC	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	299
BtgI	CCRYGG	3 cut(s)	193, 492, 622
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	30, 261
Cfr13I	GGNCC	3 cut(s)	106, 297, 618
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	5 cut(s)	194, 260, 481, 493, 623
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	239, 587
DpnI	GATC	3 cut(s)	332, 421, 438
DpnII	GATC	3 cut(s)	330, 419, 436
DrdI	GACNNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	625
Eco130I	CCWWGG	3 cut(s)	193, 492, 622
Eco47I	GGWCC	2 cut(s)	106, 618
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	3 cut(s)	193, 492, 622
EcoT22I	ATGCAT	1 cut(s)	397
ErhI	CCWWGG	3 cut(s)	193, 492, 622
FaeI	CATG	5 cut(s)	197, 263, 484, 496, 626
FatI	CATG	5 cut(s)	193, 259, 480, 492, 622
FauNDI	CATATG	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	3 cut(s)	217, 345, 605
FokI	GGATG	1 cut(s)	340
Fsp4HI	GCNGC	3 cut(s)	217, 345, 605
FspBI	CTAG	2 cut(s)	29, 642
GluI	GCNGC	3 cut(s)	217, 345, 605
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	2 cut(s)	104, 295
Hin1II	CATG	5 cut(s)	197, 263, 484, 496, 626
HincII	GTYRAC	1 cut(s)	593
HindII	GTYRAC	1 cut(s)	593
HinfI	GANTC	4 cut(s)	74, 100, 230, 530
HpaII	CCGG	2 cut(s)	104, 295
Hpy166II	GTNNAC	3 cut(s)	109, 489, 593
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	642
Hpy8I	GTNNAC	3 cut(s)	109, 489, 593
Hpy99I	CGWCG	6 cut(s)	53, 56, 59, 92, 95, 362
HpyAV	CCTTC	3 cut(s)	268, 579, 661
HpyCH4III	ACNGT	2 cut(s)	95, 597
HpyCH4V	TGCA	6 cut(s)	259, 338, 368, 374, 395, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 344
HpyF3I	CTNAG	2 cut(s)	239, 587
Hsp92II	CATG	5 cut(s)	197, 263, 484, 496, 626
Kzo9I	GATC	3 cut(s)	330, 419, 436
Lsp1109I	GCAGC	3 cut(s)	203, 331, 616
LweI	GCATC	2 cut(s)	404, 679
MaeI	CTAG	2 cut(s)	29, 642
MaeIII	GTNAC	1 cut(s)	627
MalI	GATC	3 cut(s)	332, 421, 438
MboI	GATC	3 cut(s)	330, 419, 436
MboII	GAAGA	2 cut(s)	80, 83
MflI	RGATCY	2 cut(s)	419, 436
MluCI	AATT	4 cut(s)	124, 311, 375, 450
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	3 cut(s)	164, 358, 427
Mph1103I	ATGCAT	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	459, 555
MspI	CCGG	2 cut(s)	104, 295
MspR9I	CCNGG	2 cut(s)	296, 446
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	256, 344
NciI	CCSGG	1 cut(s)	296
NcoI	CCATGG	3 cut(s)	193, 492, 622
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	3 cut(s)	330, 419, 436
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	5 cut(s)	197, 263, 484, 496, 626
NlaIV	GGNNCC	4 cut(s)	293, 620, 672, 699
NmuCI	GTSAC	1 cut(s)	627
NsiI	ATGCAT	1 cut(s)	397
NspI	RCATGY	2 cut(s)	263, 484
PaeI	GCATGC	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	4 cut(s)	74, 100, 230, 530
PkrI	GCNGC	3 cut(s)	218, 346, 606
PsiI	TTATAA	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	4 cut(s)	293, 620, 672, 699
PspPI	GGNCC	3 cut(s)	106, 297, 618
PsuI	RGATCY	2 cut(s)	419, 436
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	459, 555
SatI	GCNGC	3 cut(s)	217, 345, 605
Sau3AI	GATC	3 cut(s)	330, 419, 436
Sau96I	GGNCC	3 cut(s)	106, 297, 618
ScrFI	CCNGG	2 cut(s)	296, 446
SetI	ASST	8 cut(s)	16, 156, 238, 287, 373, 565, 640, 679
SfaNI	GCATC	2 cut(s)	404, 679
SfcI	CTRYAG	2 cut(s)	19, 502
SinI	GGWCC	2 cut(s)	106, 618
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	124, 311, 375, 450
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	29, 642
StyD4I	CCNGG	2 cut(s)	294, 444
StyI	CCWWGG	3 cut(s)	193, 492, 622
TaaI	ACNGT	2 cut(s)	95, 597
TaqI	TCGA	5 cut(s)	57, 87, 98, 156, 350
TasI	AATT	4 cut(s)	124, 311, 375, 450
TfiI	GAWTC	4 cut(s)	74, 100, 230, 530
Tru1I	TTAA	2 cut(s)	459, 555
Tru9I	TTAA	2 cut(s)	459, 555
TscAI	CASTG	1 cut(s)	602
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	3 cut(s)	216, 344, 604
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	3 cut(s)	176, 561, 569
TspRI	CASTG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	106, 618
XapI	RAATTY	1 cut(s)	124
XbaI	TCTAGA	1 cut(s)	641
XceI	RCATGY	2 cut(s)	263, 484
XmiI	GTMKAC	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	2 cut(s)	29, 642
Zsp2I	ATGCAT	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.