Rmu_sc0001862.1_g000002

Rer1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001862.1
OG0002176
Physical Location & Seq
Reverse (-)
4671 .. 6262
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 735 bp
atgtattggaggttaatgtattggaggcgaatctcctgtgatagaaatttggtccaagaaaacagaagtaaatctgggctgcttgacccgacccggtctcttggccttctgactagtacgcgggtgaatcacaccatcctttatcagacgcaacccaatagcttagcggcaaccgtcgtgacttcctcgtcttgctcgttttggctgtccacgctcgaaaccctaattccagagattcgcggcgaaaatcacaaccccgattccgatggagggacttggcagcgaccgagcggcggagacgtcaccagtggcccaatggaagagcgatttctcgagagcattccagtactatctggatcgggcttctatgtggtctcgtatgggctcggaatctacgtcttgaacctcttgattggcttcttctcaccgaaagttgacccggagcttgaacctttggatggcccttcactgccgaccaaaggtgctgatgagttcaagcctttcgttcgccgcctccccgagtttaagttctggtattccatcacaaaggctttcattattgcatttatcatgaccttcttctctgtgctggatgtgcctgttttctggccaatattgttatgctactggattgtgctttttgtcctcacaatgaaacgacagatcctacacatgatcaaatacaaatatgtcccatttgatattggaaagcagaggtacactggaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006890 GO:0008150 GO:0016192 GO:0048193 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rer1

Protein Analysis

244

Amino Acids

28.02

Weight (kDa)

9.06

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rer1 PF03248 116 - 241 7.5e-61 Rer1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AatII GACGTC 1 cut(s) 303
AccBSI CCGCTC 1 cut(s) 291
AccII CGCG 2 cut(s) 121, 240
AciI CCGC 6 cut(s) 121, 167, 240, 291, 294, 511
AclWI GGATC 2 cut(s) 364, 658
AcoI YGGCCR 1 cut(s) 608
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 118, 348, 719
AfiI CCNNNNNNNGG 4 cut(s) 270, 293, 458, 479
AgsI TTSAA 3 cut(s) 403, 449, 496
AhlI ACTAGT 1 cut(s) 113
AluBI AGCT 2 cut(s) 162, 445
AluI AGCT 2 cut(s) 162, 445
Alw26I GTCTC 3 cut(s) 102, 291, 379
AlwI GGATC 2 cut(s) 364, 658
Ama87I CYCGRG 2 cut(s) 332, 518
AoxI GGCC 4 cut(s) 103, 310, 460, 608
ApeKI GCWGC 2 cut(s) 79, 280
ApoI RAATTY 1 cut(s) 46
AspS9I GGNCC 3 cut(s) 52, 311, 461
AsuC2I CCSGG 2 cut(s) 94, 440
AsuHPI GGTGA 3 cut(s) 136, 295, 417
AvaI CYCGRG 2 cut(s) 332, 518
AvaII GGWCC 1 cut(s) 52
BalI TGGCCA 1 cut(s) 610
BanII GRGCYC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 66, 292
BccI CCATC 4 cut(s) 143, 260, 452, 548
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 2 cut(s) 94, 440
BcoDI GTCTC 3 cut(s) 102, 291, 379
BcuI ACTAGT 1 cut(s) 113
BfaI CTAG 1 cut(s) 114
BisI GCNGC 6 cut(s) 80, 168, 241, 281, 292, 511
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 6 cut(s) 81, 169, 242, 282, 293, 512
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 94, 440
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 2 cut(s) 332, 518
BmgT120I GGNCC 3 cut(s) 52, 311, 461
BmrFI CCNGG 2 cut(s) 94, 440
Bpu1102I GCTNAGC 1 cut(s) 163
BpuMI CCSGG 2 cut(s) 94, 440
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 102, 379
Bsc4I CCNNNNNNNGG 4 cut(s) 270, 293, 458, 479
Bse1I ACTGG 4 cut(s) 306, 344, 632, 727
BseGI GGATG 3 cut(s) 135, 463, 598
BseLI CCNNNNNNNGG 4 cut(s) 270, 293, 458, 479
BseNI ACTGG 4 cut(s) 306, 344, 632, 727
BseXI GCAGC 2 cut(s) 66, 292
Bsh1236I CGCG 2 cut(s) 121, 240
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 4 cut(s) 105, 312, 462, 610
BsiEI CGRYCG 1 cut(s) 287
BsiHKCI CYCGRG 2 cut(s) 332, 518
BsiSI CCGG 2 cut(s) 94, 440
BslFI GGGAC 2 cut(s) 286, 677
BslI CCNNNNNNNGG 4 cut(s) 270, 293, 458, 479
BsmAI GTCTC 3 cut(s) 102, 291, 379
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 286, 677
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 4 cut(s) 105, 312, 462, 610
Bso31I GGTCTC 2 cut(s) 102, 379
BsoBI CYCGRG 2 cut(s) 332, 518
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 356, 663, 675
Bsp1720I GCTNAGC 1 cut(s) 163
BspACI CCGC 6 cut(s) 121, 167, 240, 291, 294, 511
BspANI GGCC 4 cut(s) 105, 312, 462, 610
BspFNI CGCG 2 cut(s) 121, 240
BspHI TCATGA 1 cut(s) 570
BspPI GGATC 2 cut(s) 364, 658
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 2 cut(s) 102, 379
BsrBI CCGCTC 1 cut(s) 291
BsrI ACTGG 4 cut(s) 306, 344, 632, 727
BssMI GATC 3 cut(s) 356, 663, 675
BssNI GRCGYC 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 315
BstACI GRCGYC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 3 cut(s) 135, 463, 598
BstFNI CGCG 2 cut(s) 121, 240
BstKTI GATC 3 cut(s) 359, 666, 678
BstMAI GTCTC 3 cut(s) 102, 291, 379
BstMBI GATC 3 cut(s) 356, 663, 675
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 2 cut(s) 211, 595
BstSCI CCNGG 2 cut(s) 92, 438
BstUI CGCG 2 cut(s) 121, 240
BstV1I GCAGC 2 cut(s) 66, 292
BstX2I RGATCY 1 cut(s) 663
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 4 cut(s) 105, 312, 462, 610
BtsCI GGATG 3 cut(s) 135, 463, 598
BtsI GCAGTG 1 cut(s) 467
BtsIMutI CAGTG 3 cut(s) 313, 467, 720
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 3 cut(s) 52, 311, 461
CseI GACGC 1 cut(s) 157
Csp6I GTAC 3 cut(s) 117, 347, 718
CviAII CATG 2 cut(s) 571, 673
CviQI GTAC 3 cut(s) 117, 347, 718
DdeI CTNAG 1 cut(s) 163
DpnI GATC 3 cut(s) 358, 665, 677
DpnII GATC 3 cut(s) 356, 663, 675
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 608
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
EciI GGCGGA 1 cut(s) 309
Eco24I GRGCYC 1 cut(s) 387
Eco31I GGTCTC 2 cut(s) 102, 379
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 2 cut(s) 332, 518
EcoT38I GRGCYC 1 cut(s) 387
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 2 cut(s) 574, 676
FaiI YATR 6 cut(s) 369, 381, 572, 622, 674, 690
FaqI GGGAC 2 cut(s) 286, 677
FatI CATG 2 cut(s) 570, 672
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 6 cut(s) 80, 168, 241, 281, 292, 511
FokI GGATG 3 cut(s) 122, 470, 605
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 6 cut(s) 80, 168, 241, 281, 292, 511
FspBI CTAG 1 cut(s) 114
GluI GCNGC 6 cut(s) 80, 168, 241, 281, 292, 511
HaeIII GGCC 4 cut(s) 105, 312, 462, 610
HapII CCGG 2 cut(s) 94, 440
HgaI GACGC 1 cut(s) 157
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 574, 676
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 5 cut(s) 30, 127, 235, 260, 390
HpaII CCGG 2 cut(s) 94, 440
HphI GGTGA 3 cut(s) 136, 295, 417
Hpy166II GTNNAC 3 cut(s) 210, 436, 720
Hpy188I TCNGA 4 cut(s) 111, 147, 265, 389
Hpy188III TCNNGA 8 cut(s) 178, 230, 332, 334, 354, 400, 409, 571
Hpy8I GTNNAC 3 cut(s) 210, 436, 720
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 116, 474, 586
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 2 cut(s) 300, 396
HpyCH4V TGCA 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 595
HpyF3I CTNAG 1 cut(s) 163
HpySE526I ACGT 2 cut(s) 300, 396
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 574, 676
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 3 cut(s) 356, 663, 675
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 66, 292
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 300, 396
MaeIII GTNAC 2 cut(s) 178, 301
MalI GATC 3 cut(s) 358, 665, 677
MbiI CCGCTC 1 cut(s) 291
MboI GATC 3 cut(s) 356, 663, 675
MboII GAAGA 3 cut(s) 332, 412, 571
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 610
MluCI AATT 2 cut(s) 46, 225
MluNI TGGCCA 1 cut(s) 610
MnlI CCTC 8 cut(s) 3, 18, 196, 263, 416, 524, 656, 708
Mox20I TGGCCA 1 cut(s) 610
MscI TGGCCA 1 cut(s) 610
MseI TTAA 2 cut(s) 14, 525
Msp20I TGGCCA 1 cut(s) 610
MspI CCGG 2 cut(s) 94, 440
MspR9I CCNGG 2 cut(s) 94, 440
Mva1269I GAATGC 1 cut(s) 339
MvnI CGCG 2 cut(s) 121, 240
MwoI GCNNNNNNNGC 2 cut(s) 211, 595
NciI CCSGG 2 cut(s) 94, 440
NdeII GATC 3 cut(s) 356, 663, 675
NlaIII CATG 2 cut(s) 574, 676
NmuCI GTSAC 2 cut(s) 178, 301
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 393
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 5 cut(s) 30, 127, 235, 260, 390
PflFI GACNNNGTC 1 cut(s) 94
PkrI GCNGC 6 cut(s) 81, 169, 242, 282, 293, 512
PspPI GGNCC 3 cut(s) 52, 311, 461
PsuI RGATCY 1 cut(s) 663
PsyI GACNNNGTC 1 cut(s) 94
RsaI GTAC 3 cut(s) 118, 348, 719
RsaNI GTAC 3 cut(s) 117, 347, 718
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 14, 525
SatI GCNGC 6 cut(s) 80, 168, 241, 281, 292, 511
Sau3AI GATC 3 cut(s) 356, 663, 675
Sau96I GGNCC 3 cut(s) 52, 311, 461
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 94, 440
SduI GDGCHC 1 cut(s) 387
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 113
Sse9I AATT 2 cut(s) 46, 225
SsiI CCGC 6 cut(s) 121, 167, 240, 291, 294, 511
SspI AATATT 1 cut(s) 615
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 2 cut(s) 92, 438
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 2 cut(s) 303, 399
TaqI TCGA 2 cut(s) 216, 333
TaqII GACCGA 1 cut(s) 301
TasI AATT 2 cut(s) 46, 225
TatI WGTACW 1 cut(s) 346
TauI GCSGC 4 cut(s) 170, 243, 294, 513
TfiI GAWTC 5 cut(s) 30, 127, 235, 260, 390
Tru1I TTAA 2 cut(s) 14, 525
Tru9I TTAA 2 cut(s) 14, 525
TscAI CASTG 3 cut(s) 313, 474, 727
TseFI GTSAC 2 cut(s) 178, 301
TseI GCWGC 2 cut(s) 79, 280
Tsp45I GTSAC 2 cut(s) 178, 301
TspDTI ATGAA 2 cut(s) 544, 668
TspRI CASTG 3 cut(s) 313, 474, 727
Tth111I GACNNNGTC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 332
XspI CTAG 1 cut(s) 114
ZraI GACGTC 1 cut(s) 301
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.