Rmu_sc0001943.1_g000007

alpha-L-fucosidase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001943.1
OG0003070
Physical Location & Seq
Reverse (-)
40106 .. 41717
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1164 bp
atgttcctccattttggagtgaacacattcactggccttgagcgtggcaccgggcttgaaaacccagccatattcaacccagttgcgcttgatgcgagccaatggatgagtgtagcagaagatgcaggcatatcactaatgatacttactgcaaagcaccatgatgggttttgcttgtggccttctaagtacactgaccattctgtggaaagaagtccttggaaaaatggccatggcgatgttgttcaggagttggttaatgcggctaagccccgtgggattgacgttgggctgtatctctctgcctgggacagacatgatcgcagatatgggctggagaagccatataacgaatactacttggctcagttacaagagctactcaatagatgggttggaaatgaggctgggtttgcggggaaaacatgctggtccaccatcaatcggacctcgttatcaattgggaatgcaagcaatgaggattatctcaacaaaggtgatccaaaagggacagattggttgccagcagagtgcgatgtctcaatcagaaaaggatggttttggcatagttcagagtcacctaagaagctaagccagctactcgaaatttactataactcagtaggacgaaatgctgtgttactactcaccgtgcctcctaattcgacagggctcatatccgaagtagatgtccaaagactccgagaattcagaattgcaaccgacaccatattttcgaccaatgtagcagagaaatgctccatcaaggtgagtagccaaagagggggtacaggaggaggttttggacctgagaatgtgctagacagtgaccatttgtggacatattgggctccaagggatggtgacaaagaggaccactggattgaattcagagcagatgaagggatgaggttcaatgtgatcaggattcaagaggcgattggactaggtcagaggatcaaacggcatgaaatttgtgtcgatggtaaaatagtagttaatggaaccacagtgggtcacaagggacttcacagacttgaagagggagtagtccatggccaaacagtaagaattagaattaaagaatcaagaggagggcttcctttaatttcatccattggcctgcattctgatccctattggcccccagataaaggtgtgtga

Protein Analysis

387

Amino Acids

43.31

Weight (kDa)

6.28

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha_L_fucos PF01120 24 - 131 3.2e-21 Alpha-L-fucosidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 2 cut(s) 205, 860
AciI CCGC 2 cut(s) 263, 416
AclWI GGATC 3 cut(s) 494, 965, 1127
AcoI YGGCCR 2 cut(s) 229, 1057
AcsI RAATTY 4 cut(s) 606, 707, 887, 972
AfaI GTAC 2 cut(s) 191, 790
AfiI CCNNNNNNNGG 5 cut(s) 205, 444, 784, 860, 1154
AgsI TTSAA 6 cut(s) 59, 76, 887, 916, 932, 1040
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 3 cut(s) 379, 589, 598
AluI AGCT 3 cut(s) 379, 589, 598
Alw26I GTCTC 1 cut(s) 544
AlwI GGATC 3 cut(s) 494, 965, 1127
AoxI GGCC 6 cut(s) 34, 179, 229, 1057, 1120, 1142
ApoI RAATTY 4 cut(s) 606, 707, 887, 972
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 5 cut(s) 432, 447, 806, 874, 1143
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 5 cut(s) 509, 570, 640, 781, 875
AvaII GGWCC 4 cut(s) 432, 447, 806, 874
BalI TGGCCA 2 cut(s) 231, 1059
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 675, 853
BccI CCATC 7 cut(s) 158, 384, 446, 549, 770, 854, 977
BceAI ACGGC 1 cut(s) 980
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 544
BfaI CTAG 2 cut(s) 821, 947
BisI GCNGC 1 cut(s) 264
BlpI GCTNAGC 2 cut(s) 267, 590
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 52, 307
Bme18I GGWCC 4 cut(s) 432, 447, 806, 874
BmgT120I GGNCC 5 cut(s) 432, 447, 806, 874, 1143
BmiI GGNNCC 4 cut(s) 49, 852, 1006, 1145
BmrFI CCNGG 2 cut(s) 52, 307
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 82, 112
BmuI ACTGGG 1 cut(s) 74
BplI GAGNNNNNCTC 2 cut(s) 743, 775
BpmI CTGGAG 1 cut(s) 356
Bpu1102I GCTNAGC 2 cut(s) 267, 590
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 52
BsaJI CCNNGG 6 cut(s) 218, 232, 274, 306, 854, 1054
BsaXI ACNNNNNCTCC 2 cut(s) 640, 670
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 444, 784, 860, 1154
Bse1I ACTGG 3 cut(s) 37, 80, 884
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 6 cut(s) 218, 232, 274, 306, 854, 1054
BseGI GGATG 5 cut(s) 111, 560, 865, 912, 1112
BseLI CCNNNNNNNGG 5 cut(s) 205, 444, 784, 860, 1154
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 3 cut(s) 380, 633, 801
BseNI ACTGG 3 cut(s) 37, 80, 884
BseRI GAGGAG 2 cut(s) 810, 1107
BseYI CCCAGC 2 cut(s) 64, 407
BshFI GGCC 6 cut(s) 36, 181, 231, 1059, 1122, 1144
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 3 cut(s) 323, 523, 1038
BslI CCNNNNNNNGG 5 cut(s) 205, 444, 784, 860, 1154
BsmAI GTCTC 1 cut(s) 544
BsmFI GGGAC 3 cut(s) 323, 523, 1038
BsmI GAATGC 2 cut(s) 472, 1126
BsnI GGCC 6 cut(s) 36, 181, 231, 1059, 1122, 1144
Bsp1286I GDGCHC 2 cut(s) 675, 853
Bsp143I GATC 5 cut(s) 319, 499, 921, 957, 1132
Bsp1720I GCTNAGC 2 cut(s) 267, 590
Bsp19I CCATGG 2 cut(s) 232, 1054
BspACI CCGC 2 cut(s) 263, 416
BspANI GGCC 6 cut(s) 36, 181, 231, 1059, 1122, 1144
BspCNI CTCAG 3 cut(s) 379, 632, 802
BspLI GGNNCC 4 cut(s) 49, 852, 1006, 1145
BspPI GGATC 3 cut(s) 494, 965, 1127
BspT107I GGYRCC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 481
BsrI ACTGG 3 cut(s) 37, 80, 884
BssECI CCNNGG 6 cut(s) 218, 232, 274, 306, 854, 1054
BssMI GATC 5 cut(s) 319, 499, 921, 957, 1132
BssT1I CCWWGG 4 cut(s) 218, 232, 854, 1054
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 4 cut(s) 652, 827, 1012, 1066
Bst6I CTCTTC 1 cut(s) 1035
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 6 cut(s) 97, 127, 472, 525, 596, 1124
BstDEI CTNAG 7 cut(s) 186, 267, 366, 582, 590, 619, 810
BstDSI CCRYGG 3 cut(s) 232, 274, 1054
BstF5I GGATG 5 cut(s) 111, 560, 865, 912, 1112
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 5 cut(s) 322, 502, 924, 960, 1135
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 5 cut(s) 319, 499, 921, 957, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 92, 122, 340, 413, 595
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 429
BstSCI CCNGG 2 cut(s) 50, 305
BsuRI GGCC 6 cut(s) 36, 181, 231, 1059, 1122, 1144
BtgI CCRYGG 3 cut(s) 232, 274, 1054
BtgZI GCGATG 2 cut(s) 252, 549
BtsCI GGATG 5 cut(s) 111, 560, 865, 912, 1112
BtsIMutI CAGTG 5 cut(s) 30, 192, 832, 877, 1017
Cac8I GCNNGC 6 cut(s) 97, 127, 472, 525, 596, 1124
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 5 cut(s) 432, 447, 806, 874, 1143
Csp6I GTAC 2 cut(s) 190, 789
CviAII CATG 6 cut(s) 161, 233, 317, 426, 968, 1055
CviQI GTAC 2 cut(s) 190, 789
DdeI CTNAG 7 cut(s) 186, 267, 366, 582, 590, 619, 810
DpnI GATC 5 cut(s) 321, 501, 923, 959, 1134
DpnII GATC 5 cut(s) 319, 499, 921, 957, 1132
EaeI YGGCCR 2 cut(s) 229, 1057
Eam1104I CTCTTC 1 cut(s) 1035
EarI CTCTTC 1 cut(s) 1035
Eco130I CCWWGG 4 cut(s) 218, 232, 854, 1054
Eco24I GRGCYC 2 cut(s) 675, 853
Eco47I GGWCC 4 cut(s) 432, 447, 806, 874
EcoRI GAATTC 2 cut(s) 707, 887
EcoRII CCWGG 1 cut(s) 305
EcoT14I CCWWGG 4 cut(s) 218, 232, 854, 1054
EcoT38I GRGCYC 2 cut(s) 675, 853
ErhI CCWWGG 4 cut(s) 218, 232, 854, 1054
FaeI CATG 6 cut(s) 164, 236, 320, 429, 971, 1058
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 3 cut(s) 323, 523, 1038
FatI CATG 6 cut(s) 160, 232, 316, 425, 967, 1054
FauI CCCGC 1 cut(s) 409
FbaI TGATCA 1 cut(s) 921
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 5 cut(s) 118, 567, 872, 919, 1099
FriOI GRGCYC 2 cut(s) 675, 853
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 821, 947
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 2 cut(s) 68, 411
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 6 cut(s) 36, 181, 231, 1059, 1122, 1144
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 88
Hin1II CATG 6 cut(s) 164, 236, 320, 429, 971, 1058
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 4 cut(s) 575, 699, 928, 1085
HpaII CCGG 1 cut(s) 51
HphI GGTGA 5 cut(s) 509, 570, 640, 781, 875
Hpy166II GTNNAC 4 cut(s) 22, 192, 435, 840
Hpy188I TCNGA 9 cut(s) 447, 548, 574, 682, 704, 713, 893, 954, 1132
Hpy188III TCNNGA 4 cut(s) 248, 925, 932, 1089
Hpy8I GTNNAC 4 cut(s) 22, 192, 435, 840
HpyAV CCTTC 2 cut(s) 192, 896
HpyCH4III ACNGT 4 cut(s) 652, 827, 1012, 1066
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 5 cut(s) 125, 152, 470, 719, 1126
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 122, 340, 413, 595
HpyF3I CTNAG 7 cut(s) 186, 267, 366, 582, 590, 619, 810
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 6 cut(s) 164, 236, 320, 429, 971, 1058
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 5 cut(s) 319, 499, 921, 957, 1132
LmnI GCTCC 2 cut(s) 764, 856
LweI GCATC 2 cut(s) 82, 112
MaeI CTAG 2 cut(s) 821, 947
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 6 cut(s) 369, 576, 639, 827, 863, 1016
MalI GATC 5 cut(s) 321, 501, 923, 959, 1134
MboI GATC 5 cut(s) 319, 499, 921, 957, 1132
MboII GAAGA 2 cut(s) 131, 1052
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 675, 853
MlsI TGGCCA 2 cut(s) 231, 1059
MluNI TGGCCA 2 cut(s) 231, 1059
MlyI GAGTC 2 cut(s) 584, 693
MmeI TCCRAC 1 cut(s) 376
Mox20I TGGCCA 2 cut(s) 231, 1059
MroXI GAANNNNTTC 1 cut(s) 26
MscI TGGCCA 2 cut(s) 231, 1059
MseI TTAA 4 cut(s) 258, 999, 1080, 1106
MslI CAYNNNNRTG 3 cut(s) 162, 237, 767
Msp20I TGGCCA 2 cut(s) 231, 1059
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 307
MunI CAATTG 1 cut(s) 459
Mva1269I GAATGC 2 cut(s) 472, 1126
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 5 cut(s) 92, 122, 340, 413, 595
NciI CCSGG 1 cut(s) 52
NcoI CCATGG 2 cut(s) 232, 1054
NdeII GATC 5 cut(s) 319, 499, 921, 957, 1132
NlaIII CATG 6 cut(s) 164, 236, 320, 429, 971, 1058
NlaIV GGNNCC 4 cut(s) 49, 852, 1006, 1145
NmuCI GTSAC 4 cut(s) 576, 827, 863, 1016
NspI RCATGY 1 cut(s) 429
PctI GAATGC 2 cut(s) 472, 1126
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 928, 1085
PflFI GACNNNGTC 1 cut(s) 948
PflMI CCANNNNNTGG 2 cut(s) 205, 860
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 2 cut(s) 583, 693
PpsI GAGTC 2 cut(s) 583, 693
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 2 cut(s) 64, 407
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 4 cut(s) 49, 852, 1006, 1145
PspPI GGNCC 5 cut(s) 432, 447, 806, 874, 1143
PsyI GACNNNGTC 1 cut(s) 948
RsaI GTAC 2 cut(s) 191, 790
RsaNI GTAC 2 cut(s) 190, 789
RseI CAYNNNNRTG 3 cut(s) 162, 237, 767
SaqAI TTAA 4 cut(s) 258, 999, 1080, 1106
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 5 cut(s) 319, 499, 921, 957, 1132
Sau96I GGNCC 5 cut(s) 432, 447, 806, 874, 1143
SchI GAGTC 2 cut(s) 584, 693
ScrFI CCNGG 2 cut(s) 52, 307
SduI GDGCHC 2 cut(s) 675, 853
SfaNI GCATC 2 cut(s) 82, 112
SinI GGWCC 4 cut(s) 432, 447, 806, 874
SmiMI CAYNNNNRTG 3 cut(s) 162, 237, 767
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SsiI CCGC 2 cut(s) 263, 416
SspMI CTAG 2 cut(s) 821, 947
StyD4I CCNGG 2 cut(s) 50, 305
StyI CCWWGG 4 cut(s) 218, 232, 854, 1054
TaaI ACNGT 4 cut(s) 652, 827, 1012, 1066
TaiI ACGT 1 cut(s) 288
TaqI TCGA 4 cut(s) 603, 665, 737, 981
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 266
TfiI GAWTC 2 cut(s) 928, 1085
Tru1I TTAA 4 cut(s) 258, 999, 1080, 1106
Tru9I TTAA 4 cut(s) 258, 999, 1080, 1106
TscAI CASTG 5 cut(s) 37, 199, 832, 884, 1017
TseFI GTSAC 4 cut(s) 576, 827, 863, 1016
Tsp45I GTSAC 4 cut(s) 576, 827, 863, 1016
TspDTI ATGAA 3 cut(s) 915, 984, 1101
TspRI CASTG 5 cut(s) 37, 199, 832, 884, 1017
Tth111I GACNNNGTC 1 cut(s) 948
Van91I CCANNNNNTGG 2 cut(s) 205, 860
VpaK11BI GGWCC 4 cut(s) 432, 447, 806, 874
XapI RAATTY 4 cut(s) 606, 707, 887, 972
XceI RCATGY 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 821, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.