Rmu_sc0002095.1_g000008

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002095.1
OG0002353
Physical Location & Seq
Forward (+)
27355 .. 28143
789 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 789 bp
ctggtggagattccgaccggagatcgaacttggaatccccttgttgctcgtcaggcatcatctcgtataaggtcttgtataagatcatcacctaactcttcttcgtttgatacggcggcgtcggagttcgagttctcagctcgattcgggtcgaatggatctactgctacctggccgatgagcttggcagatgagctattcttgaatggaaagattcggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaatgaggaagatggagatgatctattcgagttcgggctgctgagaggcagagatctgaggatgagggacaactctttgtggcggagaacgagatccatgtctccgatgagaaacatgccctttggtaataatgactgttgctttgcgaaagatctgaaggagggtgatttagggaaaaagaagaagaaactggagaatggtgaggaggaggaggaggaagaagaagttgggagcttggagactactccttcggtttcagcttcgtcttcaagatcatcctcagctagaagaaactcgaaaagatgggtctttctgaaagattttctccacaagagtaaaactgaagggaggagtactaataacaaattctgggccacaatctcattcttgagtagtggtaaggagaagaaaatagaggtaagtgttgggggagaaaataggcagaaaattggctcgtccgagacaatttgcaaactacactcatacaacagatatcactattctgttgtacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

262

Amino Acids

29.61

Weight (kDa)

9.13

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 63 - 230 7.4e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AciI CCGC 2 cut(s) 116, 355
AclWI GGATC 2 cut(s) 166, 360
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 2 cut(s) 449, 636
AcyI GRCGYC 2 cut(s) 119, 257
AfaI GTAC 2 cut(s) 628, 783
AgsI TTSAA 2 cut(s) 205, 543
AjnI CCWGG 3 cut(s) 170, 240, 252
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AloI GAACNNNNNNTCC 4 cut(s) 19, 51, 116, 148
AluBI AGCT 8 cut(s) 140, 183, 196, 229, 269, 507, 533, 557
AluI AGCT 8 cut(s) 140, 183, 196, 229, 269, 507, 533, 557
Alw26I GTCTC 3 cut(s) 378, 506, 728
AlwI GGATC 2 cut(s) 166, 360
AoxI GGCC 3 cut(s) 173, 218, 645
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 638
ArsI GACNNNNNNTTYG 4 cut(s) 398, 430, 505, 537
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 219, 645
AsuHPI GGTGA 3 cut(s) 81, 449, 485
BanI GGYRCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 531
BbvCI CCTCAGC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 278, 570
BceAI ACGGC 2 cut(s) 129, 244
BciT130I CCWGG 3 cut(s) 172, 242, 254
BcoDI GTCTC 3 cut(s) 378, 506, 728
BfaI CTAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 260
BglII AGATCT 2 cut(s) 325, 424
BisI GCNGC 2 cut(s) 117, 311
BlsI GCNGC 2 cut(s) 118, 312
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 3 cut(s) 172, 242, 254
BmgT120I GGNCC 2 cut(s) 219, 645
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 3 cut(s) 172, 242, 254
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 682
BsaHI GRCGYC 2 cut(s) 119, 257
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 1 cut(s) 468
BseBI CCWGG 3 cut(s) 172, 242, 254
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 339, 548
BseMII CTCAG 4 cut(s) 150, 305, 320, 567
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 5 cut(s) 491, 494, 497, 500, 637
BseXI GCAGC 1 cut(s) 297
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 3 cut(s) 175, 220, 647
BshNI GGYRCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 18
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 3 cut(s) 378, 506, 728
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 3 cut(s) 175, 220, 647
Bsp1407I TGTACA 1 cut(s) 781
Bsp143I GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
BspACI CCGC 2 cut(s) 116, 355
BspANI GGCC 3 cut(s) 175, 220, 647
BspCNI CTCAG 4 cut(s) 149, 306, 321, 566
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 2 cut(s) 166, 360
BspT107I GGYRCC 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 781
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
BssNI GRCGYC 2 cut(s) 119, 257
Bst2UI CCWGG 3 cut(s) 172, 242, 254
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 2 cut(s) 119, 257
BstAUI TGTACA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 4 cut(s) 136, 314, 329, 553
BstF5I GGATG 2 cut(s) 339, 548
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 8 cut(s) 25, 86, 161, 295, 328, 368, 427, 548
BstMAI GTCTC 3 cut(s) 378, 506, 728
BstMBI GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 53, 226, 256
BstNI CCWGG 3 cut(s) 172, 242, 254
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 170, 240, 252
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 531
BstX2I RGATCY 4 cut(s) 158, 325, 365, 424
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 4 cut(s) 158, 325, 365, 424
BsuRI GGCC 3 cut(s) 175, 220, 647
BtsCI GGATG 2 cut(s) 339, 548
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 219, 645
CseI GACGC 1 cut(s) 108
Csp6I GTAC 2 cut(s) 627, 782
CviAII CATG 3 cut(s) 223, 370, 388
CviQI GTAC 2 cut(s) 627, 782
DdeI CTNAG 4 cut(s) 136, 314, 329, 553
DinI GGCGCC 1 cut(s) 258
DpnI GATC 8 cut(s) 24, 85, 160, 294, 327, 367, 426, 547
DpnII GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 370
Eco32I GATATC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 449, 636
EcoRII CCWGG 3 cut(s) 170, 240, 252
EcoRV GATATC 1 cut(s) 767
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
FaeI CATG 3 cut(s) 226, 373, 391
FaiI YATR 6 cut(s) 68, 80, 224, 371, 389, 757
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 222, 369, 387
Fnu4HI GCNGC 2 cut(s) 117, 311
FokI GGATG 2 cut(s) 346, 535
Fsp4HI GCNGC 2 cut(s) 117, 311
FspBI CTAG 1 cut(s) 558
GlaI GCGC 1 cut(s) 258
GluI GCNGC 2 cut(s) 117, 311
GsuI CTGGAG 1 cut(s) 485
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 175, 220, 647
HapII CCGG 1 cut(s) 18
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 2 cut(s) 119, 257
Hin1II CATG 3 cut(s) 226, 373, 391
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 4 cut(s) 10, 34, 144, 214
HpaII CCGG 1 cut(s) 18
HphI GGTGA 3 cut(s) 81, 449, 485
Hpy188I TCNGA 7 cut(s) 15, 124, 330, 378, 429, 588, 733
Hpy188III TCNNGA 3 cut(s) 202, 543, 661
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 424, 531, 611
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 2 cut(s) 265, 744
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 226, 256
HpyF3I CTNAG 4 cut(s) 136, 314, 329, 553
Hsp92I GRCGYC 2 cut(s) 119, 257
Hsp92II CATG 3 cut(s) 226, 373, 391
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
Kzo9I GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
LmnI GCTCC 1 cut(s) 504
Lsp1109I GCAGC 1 cut(s) 297
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 558
MalI GATC 8 cut(s) 24, 85, 160, 294, 327, 367, 426, 547
MboI GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
MflI RGATCY 4 cut(s) 158, 325, 365, 424
MluCI AATT 3 cut(s) 638, 720, 738
Mly113I GGCGCC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 38, 102
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 3 cut(s) 172, 242, 254
MvaI CCWGG 3 cut(s) 172, 242, 254
MwoI GCNNNNNNNGC 3 cut(s) 53, 226, 256
NarI GGCGCC 1 cut(s) 257
NdeII GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
NlaIII CATG 3 cut(s) 226, 373, 391
NlaIV GGNNCC 1 cut(s) 258
NspI RCATGY 1 cut(s) 391
PfeI GAWTC 4 cut(s) 10, 34, 144, 214
PkrI GCNGC 2 cut(s) 118, 312
PluTI GGCGCC 1 cut(s) 260
Psp6I CCWGG 3 cut(s) 170, 240, 252
PspGI CCWGG 3 cut(s) 170, 240, 252
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 219, 645
PsuI RGATCY 4 cut(s) 158, 325, 365, 424
RsaI GTAC 2 cut(s) 628, 783
RsaNI GTAC 2 cut(s) 627, 782
SatI GCNGC 2 cut(s) 117, 311
Sau3AI GATC 8 cut(s) 22, 83, 158, 292, 325, 365, 424, 545
Sau96I GGNCC 2 cut(s) 219, 645
ScaI AGTACT 1 cut(s) 628
ScrFI CCNGG 3 cut(s) 172, 242, 254
SfaNI GCATC 1 cut(s) 65
SfoI GGCGCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse9I AATT 3 cut(s) 638, 720, 738
SsiI CCGC 2 cut(s) 116, 355
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 170, 240, 252
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 6 cut(s) 25, 129, 142, 152, 300, 569
TasI AATT 3 cut(s) 638, 720, 738
TatI WGTACW 2 cut(s) 626, 781
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 4 cut(s) 10, 34, 144, 214
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 1 cut(s) 239
XapI RAATTY 1 cut(s) 638
XceI RCATGY 1 cut(s) 391
XspI CTAG 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.