Rmu_sc0002320.1_g000018
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002320.1
OG0001619
Physical Location & Seq
Reverse (-)
92014 .. 93448
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
atgactaaaggagcgtggtcgatacaagaagaccagaaactcattgactacatccaaaaacatggcgaaggttgctggaattctcttcctaaggctgcagggttgcgtcgttgcggtaagagttgtcgactgagatggataaactatctacgaccagatcttaaacgaggaagctttggagaagatgaagaggatctcatcatcaggcttcatacactccttgggaataggtggtcgctaatagctggaagactgcctggaaggacagataacgaggtgaagaattactggaactctcatttaaagaaaaagctactgaacataggcaccactactcttcgtccaaataagccccgcgagattaaccatgcaccttataataagcttgtcaagtacttcaatgacatggacgatgaggtagttgatgaggtctccgccgattccgggagcaccggaatcagcagctgcttggtgcctaagttgaatctcgaccttagtctcagcctagctcttgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

172

Amino Acids

19.58

Weight (kDa)

8.87

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 3 - 50 8.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 6 - 64 6.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 101 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 61 - 105 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 326, 472
AccI GTMKAC 1 cut(s) 127
AccII CGCG 1 cut(s) 357
AciI CCGC 3 cut(s) 114, 355, 435
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 79
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 1 cut(s) 444
AgsI TTSAA 2 cut(s) 400, 484
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 6 cut(s) 174, 245, 313, 385, 465, 509
AluI AGCT 6 cut(s) 174, 245, 313, 385, 465, 509
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 2 cut(s) 436, 503
AlwI GGATC 1 cut(s) 201
AlwNI CAGNNNCTG 1 cut(s) 465
ApeKI GCWGC 3 cut(s) 95, 462, 465
ApoI RAATTY 1 cut(s) 79
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 90
BanI GGYRCC 2 cut(s) 326, 472
BbsI GAAGAC 2 cut(s) 36, 256
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 82, 452, 474
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 436, 503
BfaI CTAG 1 cut(s) 506
BfmI CTRYAG 1 cut(s) 96
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 96, 463, 466
BlsI GCNGC 3 cut(s) 97, 464, 467
BmcAI AGTACT 1 cut(s) 395
Bme1390I CCNGG 2 cut(s) 258, 445
BmiI GGNNCC 2 cut(s) 328, 474
BmrFI CCNGG 2 cut(s) 258, 445
BoxI GACNNNNGTC 1 cut(s) 495
BpiI GAAGAC 2 cut(s) 36, 256
BpuMI CCSGG 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 220
BsaWI WCCGGW 1 cut(s) 452
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 293
Bse21I CCTNAGG 1 cut(s) 90
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 122, 514
BseNI ACTGG 1 cut(s) 293
BseXI GCAGC 3 cut(s) 82, 452, 474
Bsh1236I CGCG 1 cut(s) 357
BshNI GGYRCC 2 cut(s) 326, 472
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 2 cut(s) 444, 453
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 2 cut(s) 436, 503
Bso31I GGTCTC 1 cut(s) 436
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 2 cut(s) 157, 193
BspACI CCGC 3 cut(s) 114, 355, 435
BspCNI CTCAG 2 cut(s) 123, 513
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 2 cut(s) 328, 474
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 201
BspT107I GGYRCC 2 cut(s) 326, 472
BspTNI GGTCTC 1 cut(s) 436
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 2 cut(s) 157, 193
BssT1I CCWWGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 258
Bst6I CTCTTC 3 cut(s) 90, 183, 342
BstDEI CTNAG 5 cut(s) 90, 131, 477, 494, 500
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 1 cut(s) 357
BstKTI GATC 2 cut(s) 160, 196
BstMAI GTCTC 2 cut(s) 436, 503
BstMBI GATC 2 cut(s) 157, 193
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 258
BstPAI GACNNNNGTC 1 cut(s) 495
BstSCI CCNGG 2 cut(s) 256, 443
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 82, 452, 474
BstV2I GAAGAC 2 cut(s) 36, 256
BstX2I RGATCY 2 cut(s) 157, 193
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 2 cut(s) 157, 193
Bsu36I CCTNAGG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 465
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 394
CviAII CATG 3 cut(s) 62, 368, 406
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 5 cut(s) 90, 131, 477, 494, 500
DpnI GATC 2 cut(s) 159, 195
DpnII GATC 2 cut(s) 157, 193
DraI TTTAAA 1 cut(s) 303
Eam1104I CTCTTC 3 cut(s) 90, 183, 342
EarI CTCTTC 3 cut(s) 90, 183, 342
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 436
Eco81I CCTNAGG 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 3 cut(s) 65, 371, 409
FaiI YATR 6 cut(s) 63, 213, 323, 369, 378, 407
FatI CATG 3 cut(s) 61, 367, 405
FauI CCCGC 1 cut(s) 362
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 96, 463, 466
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 96, 463, 466
FspBI CTAG 1 cut(s) 506
GluI GCNGC 3 cut(s) 96, 463, 466
HapII CCGG 2 cut(s) 444, 453
HgaI GACGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 65, 371, 409
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HindIII AAGCTT 2 cut(s) 172, 383
HinfI GANTC 3 cut(s) 440, 456, 484
HpaII CCGG 2 cut(s) 444, 453
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 128
Hpy188III TCNNGA 2 cut(s) 488, 512
Hpy8I GTNNAC 1 cut(s) 128
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 62, 255
HpyCH4V TGCA 2 cut(s) 98, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 5 cut(s) 90, 131, 477, 494, 500
Hsp92II CATG 3 cut(s) 65, 371, 409
Kzo9I GATC 2 cut(s) 157, 193
LmnI GCTCC 2 cut(s) 11, 447
Lsp1109I GCAGC 3 cut(s) 82, 452, 474
MaeI CTAG 1 cut(s) 506
MalI GATC 2 cut(s) 159, 195
MboI GATC 2 cut(s) 157, 193
MboII GAAGA 7 cut(s) 41, 77, 194, 200, 261, 292, 329
MflI RGATCY 2 cut(s) 157, 193
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 2 cut(s) 79, 283
MnlI CCTC 5 cut(s) 161, 184, 268, 409, 421
MseI TTAA 3 cut(s) 162, 302, 363
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 2 cut(s) 444, 453
MspR9I CCNGG 2 cut(s) 258, 445
MvaI CCWGG 1 cut(s) 258
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 72
NciI CCSGG 1 cut(s) 445
NdeII GATC 2 cut(s) 157, 193
NlaIII CATG 3 cut(s) 65, 371, 409
NlaIV GGNNCC 2 cut(s) 328, 474
PfeI GAWTC 3 cut(s) 440, 456, 484
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 3 cut(s) 97, 464, 467
PshAI GACNNNNGTC 1 cut(s) 495
PsiI TTATAA 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 328, 474
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 465
PsuI RGATCY 2 cut(s) 157, 193
PvuII CAGCTG 1 cut(s) 465
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SalI GTCGAC 1 cut(s) 126
SaqAI TTAA 3 cut(s) 162, 302, 363
SatI GCNGC 3 cut(s) 96, 463, 466
Sau3AI GATC 2 cut(s) 157, 193
ScaI AGTACT 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 258, 445
SduI GDGCHC 1 cut(s) 452
SfcI CTRYAG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 2 cut(s) 79, 283
SsiI CCGC 3 cut(s) 114, 355, 435
SspMI CTAG 1 cut(s) 506
StyD4I CCNGG 2 cut(s) 256, 443
StyI CCWWGG 1 cut(s) 220
TaqI TCGA 3 cut(s) 20, 127, 489
TasI AATT 2 cut(s) 79, 283
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 3 cut(s) 440, 456, 484
Tru1I TTAA 3 cut(s) 162, 302, 363
Tru9I TTAA 3 cut(s) 162, 302, 363
TseI GCWGC 3 cut(s) 95, 462, 465
TspDTI ATGAA 2 cut(s) 200, 201
XapI RAATTY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 1 cut(s) 506
ZrmI AGTACT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.