Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002467.1

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

73745 .. 81931

Gene Structure 8187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2703 bp

atgccagtggcaagacctgaaacatctgattcgagagtcattgctcatgtagacatggactgcttctacgttcaagtggaacaaaggaaaaatccggagttaaggggcttacctacggctgtggtacagtataactcatggcaaggtgggagcttgattgctgtcagctatgaggcccggagatgtggtgtgaaacgttccatgcgaggtgctgagtcaaagcaagtctgcccagagatccagctcgtccaactcccagcagcacgtggtaaagctgacctgaactcataccggaatgccggttcagaggtggtttccattttatcaaggaagggtcgatgtgagagggcttcaattgacgaagtgtatcttgaccttactgatgcagcagaaaccatgttagctgaagctcctccagaaagcttggaagcaattgaggaggaagctctcaagtcacatgttttgggactcgataatgaggacggcagtgaagccaaagaaaatgtgaggaaatggctttgcaaaaccaatgctgatcgtcatgataagctattagcttgtggggctctcatcgttgcagaacttaggttgctagtgttgaaggagacagaatttacttgttcagctggcattgctcataataagatgctggctaaacttgcaagtggtatgaataaacctgcacaacagactgttgtgccgttatcatctgtgaaaggattgctagagtccttgccaattaagaaaatgtgggtttttatttttcagatcgaggaaaagctacagcaacgctacggaatcaatactggtacctggttatggaatattgcaagggggataagtggggaagaagttgaggggcgccttcttccgaagagccatggttctgggaagacgtttcctggacctcaggctttgaagacgatttcttctgttcaacactggcttaatgaactttgtgaagatttgagtgaacgtcttcaattggacttggatgaaaataaacgtatcgctcatacactagtgctgcatgccaacgcatacaaggccagtgattcagattcacagaagaagttcccttctaaatcttgtccccttaggtatggggctgccaagatacaagaagatgctcttaatctctttcaagctgcattacgtgaatacttgggtttattcacaggcaaaatccaaggaagtcaaaataaccaatggggaataacatccctctctgtttcagcaagtaaaattgttcctataccatcgggaacagcttcaattatgaaatactttcatggtcatcagccatcctcttcgacaaagcaatcacaggataatttcattgaagaatctgtgcctctaccaccttcaggtgtttctaatctcccagttgcttttgtattttgtcctagtgttgcttgttctgtcactctgaacaatgacttgtgcatgcagtctagaagtgataattatttggatcataatcaatctgagttgccaaaagaaaggcctttcgaagaaactaggacttctagtgcacctagttcaactcaatttgaacaaagaaggggagtatggagttacaatactgacgagattgacccctctgtcattgatgagttaccaccacatattcaacaagaagttcgtgcctggctcaggcctcacaagcagcaaaatgtagcgaaacgggtacgagcgcttccttttgatatcatcactgagattttgagctggttgcctgtagattctttgctaaggttcaagtgtgtgtgcaaaaaatggcgttccttgcttctagactacaatttcattgcaaaacatatggttcgggcgagacctctgcaactttcctataaaaaagaatggatacctaacaaatatgatacggttctttatgatgaaaacttcaaacatatttcagatgtggctggcttgcttttggaggagagtcttacttctcgagttttccgaatcagaaactttgcaacgcatcaagtactttacttgcctgatgcacacgggaaatctaggtcagtgggttttgtttttgattcatccactggtgagtgtaaagccgcatgttttcattggaaacaggagggtgactctggctttgaagtagcctttgaagttctaagtatcggaaaggatgatcaatggaggactctgaagctgcccaagcaaaatggcgaaccgttcgtgggacgatattttacagcagctaaggaagaaggggccgctcatgtggtggaaattattagagatggacaagatttcaagctagaagttcaatctcttgatatatggagtgaacgtttcaccattgccactctgccccggggagctttcttagacttgaaaagagttgcaatttttctttggaattactatgtagctgttgctgatatagtagaggaatcccttaacgtcttggtgttggaagacttcaaggaaaacaaatggaggaagatcattgttcccttgaaattcttgaaggacaatccaggtttaaaagatgagatttgccctcaaggagtttggctaaatgacctccagttgcacaatgcagtgaaaaagaatattctcgtgtatgatatggaaaggaaggtgatcaaggcgacgcataccaagtctatggagaaaatatatgaattccgaaagccaagcctggttactctcaagggaatgaagaatgaatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

900

Amino Acids

101.71

Weight (kDa)

7.78

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IMS	PF00817	17 - 222	1.8e-40	impB/mucB/samB family
POLH-Rev1_HhH	PF21704	242 - 280	4.9e-06	DNApol eta/Rev1, HhH motif
IMS_C	PF11799	291 - 418	2.9e-09	impB/mucB/samB family C-terminal domain
F-box-like	PF12937	566 - 600	2.1e-07	F-box-like
F-box	PF00646	567 - 603	5.7e-10	F-box domain
FBA_3	PF08268	626 - 881	2.8e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1604
Acc36I	ACCTGC	1 cut(s)	688
Acc65I	GGTACC	1 cut(s)	809
AccB1I	GGYRCC	2 cut(s)	809, 861
AccBSI	CCGCTC	1 cut(s)	2240
AccI	GTMKAC	1 cut(s)	51
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	2 cut(s)	2076, 2238
AclI	AACGTT	2 cut(s)	196, 2314
AclWI	GGATC	2 cut(s)	232, 1482
AcsI	RAATTY	3 cut(s)	611, 2486, 2651
AcuI	CTGAAG	3 cut(s)	426, 1350, 2189
AcvI	CACGTG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	862
AfaI	GTAC	4 cut(s)	126, 811, 1692, 1998
AfeI	AGCGCT	1 cut(s)	1698
AfiI	CCNNNNNNNGG	4 cut(s)	819, 1367, 1656, 2201
AflIII	ACRYGT	1 cut(s)	457
AhlI	ACTAGT	1 cut(s)	1021
AjnI	CCWGG	5 cut(s)	812, 901, 1649, 2503, 2667
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
Alw21I	GWGCWC	1 cut(s)	1537
Alw26I	GTCTC	2 cut(s)	599, 1828
Alw44I	GTGCAC	1 cut(s)	1533
AlwI	GGATC	2 cut(s)	232, 1482
Ama87I	CYCGRG	2 cut(s)	1959, 2337
Aor13HI	TCCGGA	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	1698
AoxI	GGCC	5 cut(s)	174, 1047, 1505, 1658, 2235
ApaLI	GTGCAC	1 cut(s)	1533
ApeKI	GCWGC	8 cut(s)	260, 386, 1027, 1109, 1148, 1669, 2173, 2219
ApoI	RAATTY	3 cut(s)	611, 2486, 2651
ArsI	GACNNNNNNTTYG	2 cut(s)	2096, 2128
Asp700I	GAANNNNTTC	3 cut(s)	978, 1073, 1270
Asp718I	GGTACC	1 cut(s)	809
AspLEI	GCGC	2 cut(s)	864, 1699
AspS9I	GGNCC	3 cut(s)	175, 905, 2235
AsuC2I	CCSGG	3 cut(s)	178, 2338, 2339
AsuHPI	GGTGA	4 cut(s)	2075, 2114, 2311, 2620
AsuII	TTCGAA	1 cut(s)	1512
AvaI	CYCGRG	2 cut(s)	1959, 2337
AvaII	GGWCC	1 cut(s)	905
AxyI	CCTNAGG	2 cut(s)	909, 1097
BaeGI	GKGCMC	1 cut(s)	1537
BanI	GGYRCC	2 cut(s)	809, 861
BanII	GRGCYC	1 cut(s)	568
BarI	GAAGNNNNNNTAC	3 cut(s)	1683, 1715, 2681
BauI	CACGAG	1 cut(s)	2585
BbrPI	CACGTG	1 cut(s)	266
BbsI	GAAGAC	4 cut(s)	899, 926, 971, 2448
Bbv12I	GWGCWC	1 cut(s)	1537
BbvI	GCAGC	8 cut(s)	272, 398, 1014, 1096, 1135, 1681, 2160, 2231
BccI	CCATC	3 cut(s)	1267, 1312, 2258
BceAI	ACGGC	3 cut(s)	132, 499, 685
BcgI	CGANNNNNNTGC	2 cut(s)	1822, 1856
BciT130I	CCWGG	5 cut(s)	814, 903, 1651, 2505, 2669
BciVI	GTATCC	1 cut(s)	1860
BclI	TGATCA	2 cut(s)	2152, 2610
BcnI	CCSGG	3 cut(s)	178, 2338, 2339
BcoDI	GTCTC	2 cut(s)	599, 1828
BcuI	ACTAGT	1 cut(s)	1021
BfmI	CTRYAG	2 cut(s)	782, 1740
BfoI	RGCGCY	2 cut(s)	865, 1700
BfuAI	ACCTGC	1 cut(s)	688
BfuI	GTATCC	1 cut(s)	1860
BmcAI	AGTACT	1 cut(s)	1998
Bme1390I	CCNGG	8 cut(s)	178, 814, 903, 1651, 2338, 2339, 2505, 2669
Bme18I	GGWCC	1 cut(s)	905
BmeT110I	CYCGRG	2 cut(s)	1959, 2337
BmgT120I	GGNCC	3 cut(s)	175, 905, 2235
BmiI	GGNNCC	3 cut(s)	811, 863, 2236
BmrFI	CCNGG	8 cut(s)	178, 814, 903, 1651, 2338, 2339, 2505, 2669
BmrI	ACTGGG	1 cut(s)	1379
BmsI	GCATC	5 cut(s)	373, 636, 1117, 1999, 2002
BmuI	ACTGGG	1 cut(s)	1379
BpiI	GAAGAC	4 cut(s)	899, 926, 971, 2448
BplI	GAGNNNNNCTC	2 cut(s)	2090, 2122
BpmI	CTGGAG	2 cut(s)	399, 2537
Bpu10I	CCTNAGC	3 cut(s)	1655, 1754, 2223
Bpu14I	TTCGAA	1 cut(s)	1512
BpuEI	CTTGAG	3 cut(s)	434, 2514, 2663
BpuMI	CCSGG	3 cut(s)	178, 2338, 2339
BsaAI	YACGTR	2 cut(s)	266, 1157
BsaBI	GATNNNNATC	1 cut(s)	1479
BsaHI	GRCGYC	1 cut(s)	862
BsaI	GGTCTC	1 cut(s)	1828
BsaJI	CCNNGG	5 cut(s)	880, 1189, 2336, 2337, 2338
BsaWI	WCCGGW	2 cut(s)	94, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 2299, 2329
Bsc4I	CCNNNNNNNGG	4 cut(s)	819, 1367, 1656, 2201
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	7 cut(s)	5, 811, 947, 1050, 1385, 2065, 2554
Bse21I	CCTNAGG	2 cut(s)	909, 1097
Bse3DI	GCAATG	4 cut(s)	39, 630, 1809, 2322
Bse8I	GATNNNNATC	1 cut(s)	1479
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	5 cut(s)	814, 903, 1651, 2505, 2669
BseDI	CCNNGG	5 cut(s)	880, 1189, 2336, 2337, 2338
BseGI	GGATG	5 cut(s)	1000, 1220, 1304, 2054, 2155
BseJI	GATNNNNATC	1 cut(s)	1479
BseLI	CCNNNNNNNGG	4 cut(s)	819, 1367, 1656, 2201
BseMI	GCAATG	4 cut(s)	39, 630, 1809, 2322
BseMII	CTCAG	5 cut(s)	204, 923, 1479, 1669, 1710
BseNI	ACTGG	7 cut(s)	5, 811, 947, 1050, 1385, 2065, 2554
BseRI	GAGGAG	3 cut(s)	402, 452, 1958
BseSI	GKGCMC	1 cut(s)	1537
BseXI	GCAGC	8 cut(s)	272, 398, 1014, 1096, 1135, 1681, 2160, 2231
BseYI	CCCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	5 cut(s)	176, 1049, 1507, 1660, 2237
BshNI	GGYRCC	2 cut(s)	809, 861
BsiHKAI	GWGCWC	1 cut(s)	1537
BsiHKCI	CYCGRG	2 cut(s)	1959, 2337
BsiSI	CCGG	5 cut(s)	95, 178, 292, 300, 2338
BslFI	GGGAC	3 cut(s)	480, 1077, 2217
BslI	CCNNNNNNNGG	4 cut(s)	819, 1367, 1656, 2201
BsmAI	GTCTC	2 cut(s)	599, 1828
BsmFI	GGGAC	3 cut(s)	480, 1077, 2217
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	5 cut(s)	176, 1049, 1507, 1660, 2237
Bso31I	GGTCTC	1 cut(s)	1828
BsoBI	CYCGRG	2 cut(s)	1959, 2337
Bsp119I	TTCGAA	1 cut(s)	1512
Bsp1286I	GDGCHC	2 cut(s)	568, 1537
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
Bsp19I	CCATGG	1 cut(s)	880
BspACI	CCGC	2 cut(s)	2076, 2238
BspANI	GGCC	5 cut(s)	176, 1049, 1507, 1660, 2237
BspCNI	CTCAG	5 cut(s)	205, 922, 1480, 1668, 1711
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	811, 863, 2236
BspMI	ACCTGC	1 cut(s)	688
BspPI	GGATC	2 cut(s)	232, 1482
BspQI	GCTCTTC	1 cut(s)	869
BspT104I	TTCGAA	1 cut(s)	1512
BspT107I	GGYRCC	2 cut(s)	809, 861
BspTNI	GGTCTC	1 cut(s)	1828
BsrBI	CCGCTC	1 cut(s)	2240
BsrDI	GCAATG	4 cut(s)	39, 630, 1809, 2322
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	7 cut(s)	5, 811, 947, 1050, 1385, 2065, 2554
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	5 cut(s)	880, 1189, 2336, 2337, 2338
BssMI	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
BssNI	GRCGYC	1 cut(s)	862
BssSI	CACGAG	1 cut(s)	2585
BssT1I	CCWWGG	2 cut(s)	880, 1189
Bst2BI	CACGAG	1 cut(s)	2585
Bst2UI	CCWGG	5 cut(s)	814, 903, 1651, 2505, 2669
Bst4CI	ACNGT	4 cut(s)	129, 694, 1888, 2196
Bst6I	CTCTTC	2 cut(s)	869, 1315
BstACI	GRCGYC	1 cut(s)	862
BstBAI	YACGTR	2 cut(s)	266, 1157
BstBI	TTCGAA	1 cut(s)	1512
BstC8I	GCNNGC	6 cut(s)	628, 651, 1032, 1448, 1930, 1934
BstDSI	CCRYGG	1 cut(s)	880
BstENI	CCTNNNNNAGG	1 cut(s)	1654
BstF5I	GGATG	5 cut(s)	1000, 1220, 1304, 2054, 2155
BstH2I	RGCGCY	2 cut(s)	865, 1700
BstHHI	GCGC	2 cut(s)	864, 1699
BstKTI	GATC	7 cut(s)	240, 538, 771, 1477, 2155, 2472, 2613
BstMAI	GTCTC	2 cut(s)	599, 1828
BstMBI	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
BstMWI	GCNNNNNNNGC	7 cut(s)	563, 632, 659, 1046, 1666, 1789, 2179
BstNI	CCWGG	5 cut(s)	814, 903, 1651, 2505, 2669
BstNSI	RCATGY	4 cut(s)	461, 1034, 1450, 2082
BstSCI	CCNGG	8 cut(s)	176, 812, 901, 1649, 2336, 2337, 2503, 2667
BstSFI	CTRYAG	2 cut(s)	782, 1740
BstSLI	GKGCMC	1 cut(s)	1537
BstV1I	GCAGC	8 cut(s)	272, 398, 1014, 1096, 1135, 1681, 2160, 2231
BstV2I	GAAGAC	4 cut(s)	899, 926, 971, 2448
BstX2I	RGATCY	1 cut(s)	237
BstXI	CCANNNNNNTGG	2 cut(s)	887, 2635
BstYI	RGATCY	1 cut(s)	237
Bsu36I	CCTNAGG	2 cut(s)	909, 1097
BsuI	GTATCC	1 cut(s)	1860
BsuRI	GGCC	5 cut(s)	176, 1049, 1507, 1660, 2237
BtgI	CCRYGG	1 cut(s)	880
BtsCI	GGATG	5 cut(s)	1000, 1220, 1304, 2054, 2155
BtsI	GCAGTG	2 cut(s)	493, 2574
BtsIMutI	CAGTG	8 cut(s)	12, 493, 940, 1057, 1716, 2040, 2058, 2574
BveI	ACCTGC	1 cut(s)	688
Cac8I	GCNNGC	6 cut(s)	628, 651, 1032, 1448, 1930, 1934
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	864, 1699
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	175, 905, 2235
Cfr9I	CCCGGG	1 cut(s)	2337
CseI	GACGC	1 cut(s)	2629
CsiI	ACCWGGT	1 cut(s)	812
Csp6I	GTAC	4 cut(s)	125, 810, 1691, 1997
CviQI	GTAC	4 cut(s)	125, 810, 1691, 1997
DinI	GGCGCC	1 cut(s)	863
DpnI	GATC	7 cut(s)	239, 537, 770, 1476, 2154, 2471, 2612
DpnII	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
DraI	TTTAAA	1 cut(s)	2511
DrdI	GACNNNNNNGTC	1 cut(s)	1604
DseDI	GACNNNNNNGTC	1 cut(s)	1604
Eam1104I	CTCTTC	2 cut(s)	869, 1315
EarI	CTCTTC	2 cut(s)	869, 1315
Eco130I	CCWWGG	2 cut(s)	880, 1189
Eco147I	AGGCCT	2 cut(s)	1507, 1660
Eco24I	GRGCYC	1 cut(s)	568
Eco31I	GGTCTC	1 cut(s)	1828
Eco32I	GATATC	1 cut(s)	1711
Eco47I	GGWCC	1 cut(s)	905
Eco47III	AGCGCT	1 cut(s)	1698
Eco57I	CTGAAG	3 cut(s)	426, 1350, 2189
Eco72I	CACGTG	1 cut(s)	266
Eco81I	CCTNAGG	2 cut(s)	909, 1097
Eco88I	CYCGRG	2 cut(s)	1959, 2337
EcoNI	CCTNNNNNAGG	1 cut(s)	1654
EcoRI	GAATTC	1 cut(s)	2651
EcoRII	CCWGG	5 cut(s)	812, 901, 1649, 2503, 2667
EcoRV	GATATC	1 cut(s)	1711
EcoT14I	CCWWGG	2 cut(s)	880, 1189
EcoT38I	GRGCYC	1 cut(s)	568
EgeI	GGCGCC	1 cut(s)	863
EheI	GGCGCC	1 cut(s)	863
ErhI	CCWWGG	2 cut(s)	880, 1189
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 1116, 1148
FaqI	GGGAC	3 cut(s)	480, 1077, 2217
FauNDI	CATATG	1 cut(s)	1821
FbaI	TGATCA	2 cut(s)	2152, 2610
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	5 cut(s)	1007, 1207, 1291, 2041, 2162
FriOI	GRGCYC	1 cut(s)	568
GlaI	GCGC	2 cut(s)	863, 1698
GsaI	CCCAGC	1 cut(s)	260
GsuI	CTGGAG	2 cut(s)	399, 2537
HaeII	RGCGCY	2 cut(s)	865, 1700
HaeIII	GGCC	5 cut(s)	176, 1049, 1507, 1660, 2237
HapII	CCGG	5 cut(s)	95, 178, 292, 300, 2338
HgaI	GACGC	1 cut(s)	2629
HhaI	GCGC	2 cut(s)	864, 1699
Hin1I	GRCGYC	1 cut(s)	862
Hin6I	GCGC	2 cut(s)	862, 1697
HinP1I	GCGC	2 cut(s)	862, 1697
HindIII	AAGCTT	1 cut(s)	421
HpaII	CCGG	5 cut(s)	95, 178, 292, 300, 2338
HphI	GGTGA	4 cut(s)	2075, 2114, 2311, 2620
Hpy166II	GTNNAC	4 cut(s)	52, 974, 1535, 2312
Hpy8I	GTNNAC	4 cut(s)	52, 974, 1535, 2312
Hpy99I	CGWCG	1 cut(s)	2623
HpyAV	CCTTC	9 cut(s)	325, 595, 875, 1089, 1374, 1557, 2225, 2488, 2599
HpyCH4III	ACNGT	4 cut(s)	129, 694, 1888, 2196
HpyCH4IV	ACGT	9 cut(s)	69, 196, 265, 896, 976, 1006, 1156, 2314, 2427
HpyF10VI	GCNNNNNNNGC	7 cut(s)	563, 632, 659, 1046, 1666, 1789, 2179
HpySE526I	ACGT	9 cut(s)	69, 196, 265, 896, 976, 1006, 1156, 2314, 2427
Hsp92I	GRCGYC	1 cut(s)	862
HspAI	GCGC	2 cut(s)	862, 1697
KasI	GGCGCC	1 cut(s)	861
Kpn2I	TCCGGA	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	813
Ksp22I	TGATCA	2 cut(s)	2152, 2610
Kzo9I	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
LguI	GCTCTTC	1 cut(s)	869
LmnI	GCTCC	3 cut(s)	150, 415, 2342
Lsp1109I	GCAGC	8 cut(s)	272, 398, 1014, 1096, 1135, 1681, 2160, 2231
LweI	GCATC	5 cut(s)	373, 636, 1117, 1999, 2002
MabI	ACCWGGT	1 cut(s)	812
MaeII	ACGT	9 cut(s)	69, 196, 265, 896, 976, 1006, 1156, 2314, 2427
MaeIII	GTNAC	6 cut(s)	453, 1423, 1577, 1617, 2102, 2671
MalI	GATC	7 cut(s)	239, 537, 770, 1476, 2154, 2471, 2612
MbiI	CCGCTC	1 cut(s)	2240
MboI	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
MfeI	CAATTG	3 cut(s)	354, 432, 983
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	568, 1537
Mly113I	GGCGCC	1 cut(s)	862
MlyI	GAGTC	7 cut(s)	45, 224, 462, 737, 1957, 2099, 2158
MmeI	TCCRAC	2 cut(s)	274, 2418
MroI	TCCGGA	1 cut(s)	94
MroXI	GAANNNNTTC	3 cut(s)	978, 1073, 1270
MseI	TTAA	6 cut(s)	101, 741, 948, 1134, 2424, 2510
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	5 cut(s)	95, 178, 292, 300, 2338
MspR9I	CCNGG	8 cut(s)	178, 814, 903, 1651, 2338, 2339, 2505, 2669
MunI	CAATTG	3 cut(s)	354, 432, 983
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	5 cut(s)	814, 903, 1651, 2505, 2669
MwoI	GCNNNNNNNGC	7 cut(s)	563, 632, 659, 1046, 1666, 1789, 2179
NarI	GGCGCC	1 cut(s)	862
NciI	CCSGG	3 cut(s)	178, 2338, 2339
NcoI	CCATGG	1 cut(s)	880
NdeI	CATATG	1 cut(s)	1821
NdeII	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
NlaIV	GGNNCC	3 cut(s)	811, 863, 2236
NmuCI	GTSAC	3 cut(s)	453, 1423, 2102
NspI	RCATGY	4 cut(s)	461, 1034, 1450, 2082
NspV	TTCGAA	1 cut(s)	1512
PaeI	GCATGC	2 cut(s)	1034, 1450
PaeR7I	CTCGAG	1 cut(s)	1959
PagI	TCATGA	1 cut(s)	541
PceI	AGGCCT	2 cut(s)	1507, 1660
PciI	ACATGT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	869
PcsI	WCGNNNNNNNCGW	2 cut(s)	202, 1966
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	3 cut(s)	978, 1073, 1270
PfeI	GAWTC	9 cut(s)	29, 798, 1055, 1061, 1346, 1745, 1971, 2051, 2417
PfoI	TCCNGGA	1 cut(s)	901
PleI	GAGTC	7 cut(s)	44, 223, 462, 736, 1956, 2099, 2158
PluTI	GGCGCC	1 cut(s)	865
PmaCI	CACGTG	1 cut(s)	266
PmlI	CACGTG	1 cut(s)	266
PpsI	GAGTC	7 cut(s)	44, 223, 462, 736, 1956, 2099, 2158
Ppu21I	YACGTR	2 cut(s)	266, 1157
PscI	ACATGT	1 cut(s)	457
Psp1406I	AACGTT	2 cut(s)	196, 2314
Psp6I	CCWGG	5 cut(s)	812, 901, 1649, 2503, 2667
PspCI	CACGTG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	256
PspGI	CCWGG	5 cut(s)	812, 901, 1649, 2503, 2667
PspN4I	GGNNCC	3 cut(s)	811, 863, 2236
PspPI	GGNCC	3 cut(s)	175, 905, 2235
PsuI	RGATCY	1 cut(s)	237
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	4 cut(s)	126, 811, 1692, 1998
RsaNI	GTAC	4 cut(s)	125, 810, 1691, 1997
SapI	GCTCTTC	1 cut(s)	869
SaqAI	TTAA	6 cut(s)	101, 741, 948, 1134, 2424, 2510
Sau3AI	GATC	7 cut(s)	237, 535, 768, 1474, 2152, 2469, 2610
Sau96I	GGNCC	3 cut(s)	175, 905, 2235
ScaI	AGTACT	1 cut(s)	1998
SchI	GAGTC	7 cut(s)	45, 224, 462, 737, 1957, 2099, 2158
ScrFI	CCNGG	8 cut(s)	178, 814, 903, 1651, 2338, 2339, 2505, 2669
SduI	GDGCHC	2 cut(s)	568, 1537
SexAI	ACCWGGT	1 cut(s)	812
SfaNI	GCATC	5 cut(s)	373, 636, 1117, 1999, 2002
SfcI	CTRYAG	2 cut(s)	782, 1740
SfoI	GGCGCC	1 cut(s)	863
Sfr274I	CTCGAG	1 cut(s)	1959
SfuI	TTCGAA	1 cut(s)	1512
SinI	GGWCC	1 cut(s)	905
SlaI	CTCGAG	1 cut(s)	1959
SmaI	CCCGGG	1 cut(s)	2339
SmlI	CTYRAG	4 cut(s)	449, 1959, 2529, 2678
SmoI	CTYRAG	4 cut(s)	449, 1959, 2529, 2678
SpeI	ACTAGT	1 cut(s)	1021
SphI	GCATGC	2 cut(s)	1034, 1450
SseBI	AGGCCT	2 cut(s)	1507, 1660
SsiI	CCGC	2 cut(s)	2076, 2238
SspDI	GGCGCC	1 cut(s)	861
SspI	AATATT	2 cut(s)	826, 2581
StuI	AGGCCT	2 cut(s)	1507, 1660
StyD4I	CCNGG	8 cut(s)	176, 812, 901, 1649, 2336, 2337, 2503, 2667
StyI	CCWWGG	2 cut(s)	880, 1189
TaaI	ACNGT	4 cut(s)	129, 694, 1888, 2196
TaiI	ACGT	9 cut(s)	72, 199, 268, 899, 979, 1009, 1159, 2317, 2430
TaqI	TCGA	7 cut(s)	32, 337, 471, 771, 1313, 1512, 1960
TatI	WGTACW	1 cut(s)	1996
TauI	GCSGC	2 cut(s)	2078, 2240
TfiI	GAWTC	9 cut(s)	29, 798, 1055, 1061, 1346, 1745, 1971, 2051, 2417
Tru1I	TTAA	6 cut(s)	101, 741, 948, 1134, 2424, 2510
Tru9I	TTAA	6 cut(s)	101, 741, 948, 1134, 2424, 2510
TscAI	CASTG	8 cut(s)	12, 493, 947, 1057, 1723, 2040, 2065, 2574
TseFI	GTSAC	3 cut(s)	453, 1423, 2102
TseI	GCWGC	8 cut(s)	260, 386, 1027, 1109, 1148, 1669, 2173, 2219
Tsp45I	GTSAC	3 cut(s)	453, 1423, 2102
TspGWI	ACGGA	1 cut(s)	810
TspMI	CCCGGG	1 cut(s)	2337
TspRI	CASTG	8 cut(s)	12, 493, 947, 1057, 1723, 2040, 2065, 2574
VneI	GTGCAC	1 cut(s)	1533
VpaK11BI	GGWCC	1 cut(s)	905
XagI	CCTNNNNNAGG	1 cut(s)	1654
XapI	RAATTY	3 cut(s)	611, 2486, 2651
XbaI	TCTAGA	2 cut(s)	1454, 1795
XceI	RCATGY	4 cut(s)	461, 1034, 1450, 2082
XhoI	CTCGAG	1 cut(s)	1959
XmaI	CCCGGG	1 cut(s)	2337
XmiI	GTMKAC	1 cut(s)	51
XmnI	GAANNNNTTC	3 cut(s)	978, 1073, 1270
ZrmI	AGTACT	1 cut(s)	1998

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.