Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002467.1

Orthogroup ID

OG0002324

Physical Location & Seq

Genomic Coordinates Forward (+)

123769 .. 128436

Gene Structure 4668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgaaatactttcatggtcatcagccatcctcttcgacaaagcaatcacaggataatttcattgaagaatctgtgcctccaccaccttcaggtaatgagaactactcggagctgaatgtaaataagccacagatcgagttaccttgtgaagaaactacgatcaagtattttgtgcctagtttgcttcaactggaagacaaaaaaaatttgttgaatgtccagaatctaatgtgttctttaaaaaatcaagcacaagatgaattcatgcaagaaagtttacccttggcaacctcagggagtgaacacttctcaggagtgaatcaaagtcagctaatgaaaaattcttctggtgaagacccttccgttaaattggccatgcctggattcaatagactggagcagaaaagaaaaacagtgaaagacaagggaacctcttcaatattgagattttttaagaaccaagatccatcttcctctccgaaaaagctagaacatgtagaaaatactgaagatgctaaagcactgctatctgttggccctcagtctagaagtgataattatttggatcataatcaatcagagttgccaaaagaaaggcctttcgaagaaactgggacttctagcgcacctagttcatctcaatttgaacaaagaaggggagtatggagttacaatactgacgagattgacccctctgtcattgatgagttaccaccagaaattcaacaagaagttcgtgcttggctcaggcctcacaagcggcaaaatatttttccaatctcgaaactcttgcttgcttctcagaccatcatcgccattgttgaagatccacctctcagagtgatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006282 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009650 GO:0009987 GO:0010224 GO:0010225 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019985 GO:0031323 GO:0031974 GO:0031981 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko01524 ko03460 map01524 map03460

Pfam Domains

Protein Families

IMS IMS_C

Protein Analysis

282

Amino Acids

31.89

Weight (kDa)

5.39

Isoelectric Point (pI)

73.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UBM	PF14377	227 - 245	7.1e-06	Ubiquitin binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44740 AT5G44740 AT5G44740
fragaria_vesca	FvH4_3g13010 FvH4_3g13010 FvH4_3g13010 FvH4_3g13010
malus_domestica	MD10G1227100.v1.1 MD10G1227200.v1.1
prunus_persica	Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1 Prupe.4G118000_v2.0.a1
pyrus_communis	pycom10g19090
rosa_chinensis	RchiOBHm_Chr4g0406911 RchiOBHm_Chr4g0406921 RchiOBHm_Chr5g0021111 RchiOBHm_Chr5g0021121 RchiOBHm_Chr5g0021171 RchiOBHm_Chr5g0021201
rosa_laevigata	RLG00000032590 RLG00000032594
rosa_multiflora	Rmu_sc0002467.1_g000007 Rmu_sc0002467.1_g000009 Rmu_sc0002467.1_g000013 Rmu_sc0002467.1_g000015 Rmu_sc0012431.1_g000002
rosa_roxburghii	Rroxscaffold_1G00057300 Rroxscaffold_1G00057320 Rroxscaffold_1G00057330 Rroxscaffold_5G00351670
rosa_rugosa	Rorug05G0064800 Rorug05G0065100 Rorug05G0065100
rosa_samantha	Rh5AG154000 Rh5BG153700 Rh5CG166700 Rh5CG167300 Rh5DG154100
rosa_wichuraiana	Rw1G022470 Rw5G013690 Rw5G013710 Rw5G013730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	695
AciI	CCGC	1 cut(s)	760
AclWI	GGATC	3 cut(s)	458, 573, 821
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	4 cut(s)	205, 260, 340, 720
AcuI	CTGAAG	2 cut(s)	72, 528
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	8 cut(s)	65, 188, 214, 388, 438, 647, 725, 824
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	3 cut(s)	112, 331, 487
AluI	AGCT	3 cut(s)	112, 331, 487
AlwI	GGATC	3 cut(s)	458, 573, 821
AoxI	GGCC	4 cut(s)	372, 535, 596, 749
ApoI	RAATTY	4 cut(s)	205, 260, 340, 720
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	362
AsuII	TTCGAA	1 cut(s)	603
AxyI	CCTNAGG	1 cut(s)	292
BalI	TGGCCA	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	201, 360
BccI	CCATC	3 cut(s)	34, 475, 815
BcgI	CGANNNNNNTGC	2 cut(s)	772, 806
BciT130I	CCWGG	1 cut(s)	381
BfaI	CTAG	5 cut(s)	177, 488, 546, 621, 630
BisI	GCNGC	1 cut(s)	761
BlsI	GCNGC	1 cut(s)	762
Bme1390I	CCNGG	1 cut(s)	381
BmgT120I	GGNCC	1 cut(s)	536
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	2 cut(s)	201, 360
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	195, 399, 616
Bse21I	CCTNAGG	1 cut(s)	292
Bse8I	GATNNNNATC	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	5 cut(s)	306, 324, 554, 760, 815
BseNI	ACTGG	3 cut(s)	195, 399, 616
BshFI	GGCC	4 cut(s)	374, 537, 598, 751
BslFI	GGGAC	1 cut(s)	628
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	628
BsnI	GGCC	4 cut(s)	374, 537, 598, 751
Bsp119I	TTCGAA	1 cut(s)	603
Bsp143I	GATC	5 cut(s)	132, 159, 463, 565, 826
BspACI	CCGC	1 cut(s)	760
BspANI	GGCC	4 cut(s)	374, 537, 598, 751
BspCNI	CTCAG	6 cut(s)	305, 323, 553, 759, 814, 849
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	458, 573, 821
BspT104I	TTCGAA	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	195, 399, 616
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	132, 159, 463, 565, 826
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	2 cut(s)	37, 439
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	6 cut(s)	292, 310, 540, 746, 801, 836
BstF5I	GGATG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	5 cut(s)	135, 162, 466, 568, 829
BstMBI	GATC	5 cut(s)	132, 159, 463, 565, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 757
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	201, 360
BstX2I	RGATCY	2 cut(s)	463, 826
BstYI	RGATCY	2 cut(s)	463, 826
Bsu36I	CCTNAGG	1 cut(s)	292
BsuRI	GGCC	4 cut(s)	374, 537, 598, 751
BtgZI	GCGATG	1 cut(s)	796
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	420, 521
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	1 cut(s)	626
Cfr13I	GGNCC	1 cut(s)	536
CviAII	CATG	4 cut(s)	14, 265, 376, 494
DdeI	CTNAG	6 cut(s)	292, 310, 540, 746, 801, 836
DpnI	GATC	5 cut(s)	134, 161, 465, 567, 828
DpnII	GATC	5 cut(s)	132, 159, 463, 565, 826
DraI	TTTAAA	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	695
DseDI	GACNNNNNNGTC	1 cut(s)	695
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	37, 439
EarI	CTCTTC	2 cut(s)	37, 439
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	2 cut(s)	598, 751
Eco57I	CTGAAG	2 cut(s)	72, 528
Eco81I	CCTNAGG	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	17, 268, 379, 497
FaiI	YATR	7 cut(s)	15, 266, 377, 495, 570, 664, 847
FaqI	GGGAC	1 cut(s)	628
FatI	CATG	4 cut(s)	13, 264, 375, 493
Fnu4HI	GCNGC	1 cut(s)	761
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	761
FspBI	CTAG	5 cut(s)	177, 488, 546, 621, 630
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	1 cut(s)	761
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	374, 537, 598, 751
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	4 cut(s)	17, 268, 379, 497
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HinfI	GANTC	4 cut(s)	68, 223, 319, 384
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	278, 302
Hpy188I	TCNGA	5 cut(s)	109, 480, 580, 804, 839
Hpy188III	TCNNGA	4 cut(s)	220, 312, 546, 781
Hpy8I	GTNNAC	2 cut(s)	278, 302
HpyAV	CCTTC	3 cut(s)	96, 369, 648
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 757
HpyF3I	CTNAG	6 cut(s)	292, 310, 540, 746, 801, 836
Hsp92II	CATG	4 cut(s)	17, 268, 379, 497
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	5 cut(s)	132, 159, 463, 565, 826
LmnI	GCTCC	2 cut(s)	109, 397
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	5 cut(s)	177, 488, 546, 621, 630
MaeIII	GTNAC	3 cut(s)	138, 668, 708
MalI	GATC	5 cut(s)	134, 161, 465, 567, 828
MboI	GATC	5 cut(s)	132, 159, 463, 565, 826
MflI	RGATCY	2 cut(s)	463, 826
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
MluNI	TGGCCA	1 cut(s)	374
MnlI	CCTC	9 cut(s)	40, 87, 301, 442, 484, 549, 703, 762, 843
Mox20I	TGGCCA	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	3 cut(s)	239, 366, 453
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	181, 757
NdeII	GATC	5 cut(s)	132, 159, 463, 565, 826
NlaIII	CATG	4 cut(s)	17, 268, 379, 497
NlaIV	GGNNCC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	497
NspV	TTCGAA	1 cut(s)	603
PceI	AGGCCT	2 cut(s)	598, 751
PciI	ACATGT	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	4 cut(s)	68, 223, 319, 384
PkrI	GCNGC	1 cut(s)	762
PscI	ACATGT	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	536
PsuI	RGATCY	2 cut(s)	463, 826
SaqAI	TTAA	3 cut(s)	239, 366, 453
SatI	GCNGC	1 cut(s)	761
Sau3AI	GATC	5 cut(s)	132, 159, 463, 565, 826
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	381
SfaNI	GCATC	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	603
Sse9I	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
SseBI	AGGCCT	2 cut(s)	598, 751
SsiI	CCGC	1 cut(s)	760
SspI	AATATT	2 cut(s)	441, 769
SspMI	CTAG	5 cut(s)	177, 488, 546, 621, 630
StuI	AGGCCT	2 cut(s)	598, 751
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	4 cut(s)	35, 135, 603, 782
TasI	AATT	8 cut(s)	55, 205, 260, 340, 368, 556, 641, 720
TauI	GCSGC	1 cut(s)	763
TfiI	GAWTC	4 cut(s)	68, 223, 319, 384
Tru1I	TTAA	3 cut(s)	239, 366, 453
Tru9I	TTAA	3 cut(s)	239, 366, 453
TscAI	CASTG	2 cut(s)	420, 528
TspDTI	ATGAA	6 cut(s)	17, 49, 253, 273, 350, 624
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	2 cut(s)	420, 528
XapI	RAATTY	4 cut(s)	205, 260, 340, 720
XbaI	TCTAGA	1 cut(s)	545
XceI	RCATGY	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	5 cut(s)	177, 488, 546, 621, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.