Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002503.1

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Forward (+)

75086 .. 77117

Gene Structure 2032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgtggtatactttcagaggcgaccttgttgcacgagggtttgggcagaagattgttgtcttcctcaacaagaacgcggccgtgacagactatgcgattcgaggcatgaagacatggctgacggaactagcaattgggggtgcgacgataccacttttcaccattgaagatgacgaaggagcttggccagaccagtcttgcaaacactgcagaattgcagactgcgaaagcattcatgtttcaaagaaacggttccatatgttagttccagttgaggaagtgtggaatgaatgccttaatgaaagtgttttggataacccacaaggaaattccttgctgtatgtggtgatacacatgaatgcctatgcccatttgctttggattcaaagaagttcttctggtgtgatgtctggcagtaacctcatggacatatgggattgtctatgtaaaattcttgaaataagagatgttacgttggaggatgttgccaagaaagggaatgttgatcttcgcttgctctgtggggtggctcacggaagatcctggttcgataggtggggatacaaattttggagagggagatatggagtagatgaagtgaagtatgaggttgccctagcttatctccgtaaccttgacatttatcaggttgttgaagtgtttcacaagaggcacataccattgctagctagtataccccgcaaaagttggactagggaccaaataaaggaggcaataacggtactgatcaatatactggataagagaggccctataacaagggaggacctcagtgaggcagctagctccgaagtgagtccaagtgagctactggactatgcaatttcaacaatgaagaatctgaagtgtgggaagcaccaaattgtagcttgcaaggagaatccaatctcaaatgtgatggagtatggactggagactcttcctctcctaacaactgagccccttgatgttcaccgtgatgcagtttttgtatatgaaactgttgttctacaataccccgaagttggcagtgaatattcaatggtgaagttgtgtgtagacaccatgttaaaatacaattaccttatgaagggaactgaaccatgttgcaaaggctctggtaaaaaggtggagtgcaagtgtggcacgtctaaagatgatggagaaagattcttgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

393

Amino Acids

44.74

Weight (kDa)

6.1

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	237 - 313	1.5e-10	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	8, 694, 1059
AccII	CGCG	1 cut(s)	77
AciI	CCGC	2 cut(s)	77, 700
AclWI	GGATC	1 cut(s)	534
AcoI	YGGCCR	2 cut(s)	78, 185
AcsI	RAATTY	3 cut(s)	328, 450, 566
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	1 cut(s)	744
AfiI	CCNNNNNNNGG	5 cut(s)	495, 727, 796, 1025, 1090
AgsI	TTSAA	7 cut(s)	167, 243, 386, 458, 656, 849, 1041
AjiI	CACGTC	1 cut(s)	1149
AjnI	CCWGG	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	7 cut(s)	182, 620, 689, 803, 807, 829, 890
AluI	AGCT	7 cut(s)	182, 620, 689, 803, 807, 829, 890
Alw26I	GTCTC	1 cut(s)	929
AlwI	GGATC	1 cut(s)	534
AoxI	GGCC	3 cut(s)	78, 185, 769
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	3 cut(s)	328, 450, 566
Asp700I	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
AspS9I	GGNCC	3 cut(s)	718, 770, 787
AsuHPI	GGTGA	4 cut(s)	151, 358, 965, 1057
AsuNHI	GCTAGC	2 cut(s)	685, 803
AvaII	GGWCC	2 cut(s)	718, 787
BalI	TGGCCA	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	963
BauI	CACGAG	1 cut(s)	33
BbsI	GAAGAC	2 cut(s)	52, 116
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	2 cut(s)	913, 1154
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	1 cut(s)	554
BclI	TGATCA	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	929
BfaI	CTAG	6 cut(s)	128, 617, 686, 690, 714, 804
BfmI	CTRYAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	554
BisI	GCNGC	2 cut(s)	78, 801
BlsI	GCNGC	2 cut(s)	79, 802
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	2 cut(s)	718, 787
BmgBI	CACGTC	1 cut(s)	1149
BmgT120I	GGNCC	3 cut(s)	718, 770, 787
BmiI	GGNNCC	2 cut(s)	254, 719
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	970
BmtI	GCTAGC	2 cut(s)	689, 807
BpiI	GAAGAC	2 cut(s)	52, 116
BpmI	CTGGAG	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	1124, 1154
Bsc4I	CCNNNNNNNGG	5 cut(s)	495, 727, 796, 1025, 1090
Bse1I	ACTGG	5 cut(s)	193, 269, 762, 837, 936
Bse3DI	GCAATG	1 cut(s)	680
BseBI	CCWGG	1 cut(s)	544
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	5 cut(s)	495, 727, 796, 1025, 1090
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	805, 948
BseNI	ACTGG	5 cut(s)	193, 269, 762, 837, 936
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	812
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	3 cut(s)	80, 187, 771
BsiEI	CGRYCG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	5 cut(s)	495, 727, 796, 1025, 1090
BsmAI	GTCTC	1 cut(s)	929
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	3 cut(s)	231, 296, 364
BsnI	GGCC	3 cut(s)	80, 187, 771
Bsp1286I	GDGCHC	1 cut(s)	963
Bsp143I	GATC	3 cut(s)	505, 539, 747
BspACI	CCGC	2 cut(s)	77, 700
BspANI	GGCC	3 cut(s)	80, 187, 771
BspCNI	CTCAG	2 cut(s)	804, 949
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	2 cut(s)	254, 719
BspMAI	CTGCAG	1 cut(s)	212
BspOI	GCTAGC	2 cut(s)	689, 807
BspPI	GGATC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	680
BsrI	ACTGG	5 cut(s)	193, 269, 762, 837, 936
BssMI	GATC	3 cut(s)	505, 539, 747
BssNAI	GTATAC	2 cut(s)	9, 695
BssSI	CACGAG	1 cut(s)	33
Bst1107I	GTATAC	2 cut(s)	9, 695
Bst2BI	CACGAG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	252, 742, 977, 1003
Bst6I	CTCTTC	1 cut(s)	945
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	515, 687, 805, 892
BstDEI	CTNAG	2 cut(s)	791, 957
BstENI	CCTNNNNNAGG	2 cut(s)	794, 1088
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	508, 542, 750
BstMAI	GTCTC	1 cut(s)	929
BstMBI	GATC	3 cut(s)	505, 539, 747
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 1143
BstNI	CCWGG	1 cut(s)	544
BstSCI	CCNGG	1 cut(s)	542
BstSFI	CTRYAG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	812
BstV2I	GAAGAC	2 cut(s)	52, 116
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BstZ17I	GTATAC	2 cut(s)	9, 695
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	80, 187, 771
BtrI	CACGTC	1 cut(s)	1149
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	205, 1036
BtsIMutI	CAGTG	3 cut(s)	205, 799, 1036
Cac8I	GCNNGC	4 cut(s)	515, 687, 805, 892
Cfr13I	GGNCC	3 cut(s)	718, 770, 787
Csp6I	GTAC	1 cut(s)	743
CviAII	CATG	7 cut(s)	106, 114, 236, 355, 424, 1066, 1104
CviQI	GTAC	1 cut(s)	743
DdeI	CTNAG	2 cut(s)	791, 957
DpnI	GATC	3 cut(s)	507, 541, 749
DpnII	GATC	3 cut(s)	505, 539, 747
EaeI	YGGCCR	2 cut(s)	78, 185
EagI	CGGCCG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	945
EarI	CTCTTC	1 cut(s)	945
EclXI	CGGCCG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	963
Eco47I	GGWCC	2 cut(s)	718, 787
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	884
EcoNI	CCTNNNNNAGG	2 cut(s)	794, 1088
EcoO109I	RGGNCCY	2 cut(s)	770, 787
EcoRII	CCWGG	1 cut(s)	542
EcoT38I	GRGCYC	1 cut(s)	963
FaeI	CATG	7 cut(s)	109, 117, 239, 358, 427, 1069, 1107
FalI	AAGNNNNNCTT	2 cut(s)	379, 411
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	7 cut(s)	105, 113, 235, 354, 423, 1065, 1103
FauI	CCCGC	1 cut(s)	707
FauNDI	CATATG	2 cut(s)	258, 431
FbaI	TGATCA	1 cut(s)	747
FblI	GTMKAC	3 cut(s)	8, 694, 1059
Fnu4HI	GCNGC	2 cut(s)	78, 801
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	1 cut(s)	963
Fsp4HI	GCNGC	2 cut(s)	78, 801
FspBI	CTAG	6 cut(s)	128, 617, 686, 690, 714, 804
GluI	GCNGC	2 cut(s)	78, 801
GsuI	CTGGAG	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	80, 187, 771
Hin1II	CATG	7 cut(s)	109, 117, 239, 358, 427, 1069, 1107
HinfI	GANTC	7 cut(s)	97, 382, 817, 859, 901, 937, 1170
HphI	GGTGA	4 cut(s)	151, 358, 965, 1057
Hpy166II	GTNNAC	4 cut(s)	9, 695, 973, 1060
Hpy188I	TCNGA	3 cut(s)	17, 811, 864
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	4 cut(s)	9, 695, 973, 1060
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	170, 1084
HpyCH4III	ACNGT	4 cut(s)	252, 742, 977, 1003
HpyCH4IV	ACGT	2 cut(s)	473, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 1143
HpyF3I	CTNAG	2 cut(s)	791, 957
HpySE526I	ACGT	2 cut(s)	473, 1148
Hsp92II	CATG	7 cut(s)	109, 117, 239, 358, 427, 1069, 1107
Ksp22I	TGATCA	1 cut(s)	747
Kzo9I	GATC	3 cut(s)	505, 539, 747
LmnI	GCTCC	2 cut(s)	179, 812
Lsp1109I	GCAGC	1 cut(s)	812
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	6 cut(s)	128, 617, 686, 690, 714, 804
MaeII	ACGT	2 cut(s)	473, 1148
MaeIII	GTNAC	4 cut(s)	82, 416, 469, 629
MalI	GATC	3 cut(s)	507, 541, 749
MboI	GATC	3 cut(s)	505, 539, 747
MboII	GAAGA	9 cut(s)	52, 61, 121, 179, 387, 500, 549, 868, 932
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	1 cut(s)	963
MlsI	TGGCCA	1 cut(s)	187
MluCI	AATT	8 cut(s)	132, 213, 328, 450, 566, 843, 882, 1078
MluNI	TGGCCA	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	826, 931
MmeI	TCCRAC	2 cut(s)	456, 689
Mox20I	TGGCCA	1 cut(s)	187
MroXI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
MscI	TGGCCA	1 cut(s)	187
MseI	TTAA	2 cut(s)	297, 1070
MslI	CAYNNNNRTG	2 cut(s)	357, 978
Msp20I	TGGCCA	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	544
MunI	CAATTG	1 cut(s)	132
Mva1269I	GAATGC	3 cut(s)	231, 296, 364
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	207, 1143
NdeI	CATATG	2 cut(s)	258, 431
NdeII	GATC	3 cut(s)	505, 539, 747
NheI	GCTAGC	2 cut(s)	685, 803
NlaIII	CATG	7 cut(s)	109, 117, 239, 358, 427, 1069, 1107
NlaIV	GGNNCC	2 cut(s)	254, 719
NmuCI	GTSAC	1 cut(s)	82
PctI	GAATGC	3 cut(s)	231, 296, 364
PdmI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
PfeI	GAWTC	5 cut(s)	97, 382, 859, 901, 1170
PkrI	GCNGC	2 cut(s)	79, 802
PleI	GAGTC	2 cut(s)	825, 931
PpsI	GAGTC	2 cut(s)	825, 931
PpuMI	RGGWCCY	1 cut(s)	787
Psp5II	RGGWCCY	1 cut(s)	787
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	2 cut(s)	254, 719
PspPI	GGNCC	3 cut(s)	718, 770, 787
PspPPI	RGGWCCY	1 cut(s)	787
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	1 cut(s)	744
RsaNI	GTAC	1 cut(s)	743
RseI	CAYNNNNRTG	2 cut(s)	357, 978
SaqAI	TTAA	2 cut(s)	297, 1070
SatI	GCNGC	2 cut(s)	78, 801
Sau3AI	GATC	3 cut(s)	505, 539, 747
Sau96I	GGNCC	3 cut(s)	718, 770, 787
SchI	GAGTC	2 cut(s)	826, 931
ScrFI	CCNGG	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	963
SfaNI	GCATC	1 cut(s)	970
SfcI	CTRYAG	1 cut(s)	208
SinI	GGWCC	2 cut(s)	718, 787
SmiMI	CAYNNNNRTG	2 cut(s)	357, 978
Sse9I	AATT	8 cut(s)	132, 213, 328, 450, 566, 843, 882, 1078
SsiI	CCGC	2 cut(s)	77, 700
SspI	AATATT	1 cut(s)	1037
SspMI	CTAG	6 cut(s)	128, 617, 686, 690, 714, 804
StyD4I	CCNGG	1 cut(s)	542
TaaI	ACNGT	4 cut(s)	252, 742, 977, 1003
TaiI	ACGT	2 cut(s)	476, 1151
TaqI	TCGA	2 cut(s)	100, 549
TasI	AATT	8 cut(s)	132, 213, 328, 450, 566, 843, 882, 1078
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	5 cut(s)	97, 382, 859, 901, 1170
Tru1I	TTAA	2 cut(s)	297, 1070
Tru9I	TTAA	2 cut(s)	297, 1070
TscAI	CASTG	3 cut(s)	212, 799, 1036
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	9 cut(s)	122, 224, 303, 315, 371, 609, 869, 1011, 1103
TspGWI	ACGGA	3 cut(s)	137, 549, 617
TspRI	CASTG	3 cut(s)	212, 799, 1036
VpaK11BI	GGWCC	2 cut(s)	718, 787
XagI	CCTNNNNNAGG	2 cut(s)	794, 1088
XapI	RAATTY	3 cut(s)	328, 450, 566
XmiI	GTMKAC	3 cut(s)	8, 694, 1059
XmnI	GAANNNNTTC	4 cut(s)	231, 251, 394, 660
XspI	CTAG	6 cut(s)	128, 617, 686, 690, 714, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.