Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002942.1

Orthogroup ID

OG0002873

Physical Location & Seq

Genomic Coordinates Forward (+)

140866 .. 142442

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgggagttccagctttctacagatggctagcggagaagtatccactcgtcatcgtcaatgtggtggaagaagaaccggttgtaatcgacgacgtttcgattccagtccacactagtaagccaaatcctaacggcgagtatgacaatctgtacctcgacatgaatgggattattctcaatatcatcaaaaaccaccaatctctcatcaaaacaccatgggtttctcatcaaaacaccatctcgattagggttcgactgcacacatcgattaagattttgatccctcttcttgttcatgtctatctctccgaagccaacccatttcctctctcatctcccctcacctgcaaaccaaaaaggaagaagctcgaagttttgattctgagcaacatcatcaggaagaaaagagggggggggggagaggggctaggattgtttgctcgatcgattgtgcttggtaatggctgcgattgttttgattcagctcttagttattggctttggttgcatgccctgaaagggaagggaaacaggttctggttctgggcctactgccaagaattggttctggttatgatgatctctgcatatgctgcctcgacatccgacgacattgtacctgcaatttcactcacagagaatgcatcaaagcacttcaataagatgagatccaaatataatgaggatctatgcctgggaattggtgttaaacagggtcgatattcgggcatgtcgtataccatggacttctatagcagagaaaatgcaagaccagatgattcaaccattaaatataatggttttaagatacgtcagccttcatattttcattctcttaatcaagtgagcttggactatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031974 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fe-S_biosyn

Protein Analysis

287

Amino Acids

32.59

Weight (kDa)

9.04

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	1 - 91	3.8e-14	XRN 5'-3' exonuclease N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002873)

Species	Orthologous Gene IDs
malus_domestica	MD15G1369000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0158691 RchiOBHm_Chr3g0461771 RchiOBHm_Chr3g0477511 RchiOBHm_Chr4g0391611 RchiOBHm_Chr5g0060841 RchiOBHm_Chr5g0074511 RchiOBHm_Chr5g0074521 RchiOBHm_Chr6g0248211
rosa_laevigata	RLG00000001875 RLG00000032521
rosa_multiflora	Rmu_sc0001803.1_g000035 Rmu_sc0002942.1_g000044 Rmu_sc0005455.1_g000008 Rmu_sc0006619.1_g000001 Rmu_sc0015767.1_g000001 Rmu_sc0034909.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094060 Rroxscaffold_2G00116020 Rroxscaffold_3G00235080 Rroxscaffold_5G00358150 Rroxscaffold_5G00359750
rosa_rugosa	Rorug05G0328100 Rorug05G0352400 Rorug07G0018800 Rorug07G0018900
rosa_samantha	Rh2AG426900 Rh2BG244900 Rh2BG245000 Rh2BG415100 Rh3BG245300 Rh3CG117000 Rh3CG370200 Rh3CG370300 Rh4DG044300 Rh5DG334900 Rh5DG403500 Rh6CG125700 Rh7CG192300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	2 cut(s)	353, 628
AccB7I	CCANNNNNTGG	1 cut(s)	562
AccI	GTMKAC	1 cut(s)	737
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	274, 663, 693
AfaI	GTAC	2 cut(s)	152, 618
AfiI	CCNNNNNNNGG	2 cut(s)	519, 562
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	658, 783
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	693
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AluBI	AGCT	4 cut(s)	14, 367, 485, 849
AluI	AGCT	4 cut(s)	14, 367, 485, 849
AlwI	GGATC	3 cut(s)	274, 663, 693
AlwNI	CAGNNNCTG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	465, 593
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	452, 580
BccI	CCATC	2 cut(s)	18, 245
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	51
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	3 cut(s)	29, 114, 428
BfmI	CTRYAG	2 cut(s)	19, 751
BfuAI	ACCTGC	2 cut(s)	353, 628
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	2 cut(s)	466, 594
BlsI	GCNGC	2 cut(s)	467, 595
Bme1390I	CCNGG	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	695
BmsI	GCATC	1 cut(s)	653
BmtI	GCTAGC	1 cut(s)	32
Bsa29I	ATCGAT	2 cut(s)	266, 446
BsaBI	GATNNNNATC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	215, 694, 741
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 562
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	2 cut(s)	266, 446
BseDI	CCNNGG	3 cut(s)	215, 694, 741
BseGI	GGATG	1 cut(s)	602
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	2 cut(s)	519, 562
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	2 cut(s)	452, 580
BsgI	GTGCAG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	548
BshTI	ACCGGT	1 cut(s)	76
BshVI	ATCGAT	2 cut(s)	266, 446
BsiEI	CGRYCG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	519, 562
BsmI	GAATGC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	279, 443, 579, 668, 685
Bsp19I	CCATGG	2 cut(s)	215, 741
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	1 cut(s)	375
BspDI	ATCGAT	2 cut(s)	266, 446
BspMI	ACCTGC	2 cut(s)	353, 628
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	274, 663, 693
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	215, 694, 741
BssMI	GATC	5 cut(s)	279, 443, 579, 668, 685
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	2 cut(s)	215, 741
Bst1107I	GTATAC	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	695
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	30, 510
BstDEI	CTNAG	2 cut(s)	383, 488
BstDSI	CCRYGG	2 cut(s)	215, 741
BstF5I	GGATG	1 cut(s)	602
BstKTI	GATC	5 cut(s)	282, 446, 582, 671, 688
BstMBI	GATC	5 cut(s)	279, 443, 579, 668, 685
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	2 cut(s)	505, 593
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	2 cut(s)	512, 733
BstSCI	CCNGG	1 cut(s)	693
BstSFI	CTRYAG	2 cut(s)	19, 751
BstV1I	GCAGC	2 cut(s)	452, 580
BstX2I	RGATCY	2 cut(s)	668, 685
BstYI	RGATCY	2 cut(s)	668, 685
BstZ17I	GTATAC	1 cut(s)	738
Bsu15I	ATCGAT	2 cut(s)	266, 446
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	548
BsuTUI	ATCGAT	2 cut(s)	266, 446
BtgI	CCRYGG	2 cut(s)	215, 741
BtsCI	GGATG	1 cut(s)	602
BveI	ACCTGC	2 cut(s)	353, 628
Cac8I	GCNNGC	2 cut(s)	30, 510
CaiI	CAGNNNCTG	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	546
ClaI	ATCGAT	2 cut(s)	266, 446
Csp6I	GTAC	2 cut(s)	151, 617
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	6 cut(s)	160, 216, 296, 509, 730, 742
CviQI	GTAC	2 cut(s)	151, 617
DdeI	CTNAG	2 cut(s)	383, 488
DpnI	GATC	5 cut(s)	281, 445, 581, 670, 687
DpnII	GATC	5 cut(s)	279, 443, 579, 668, 685
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	215, 741
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	2 cut(s)	215, 741
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	2 cut(s)	215, 741
FaeI	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
FatI	CATG	6 cut(s)	159, 215, 295, 508, 729, 741
FauNDI	CATATG	1 cut(s)	589
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	2 cut(s)	466, 594
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	2 cut(s)	466, 594
FspBI	CTAG	3 cut(s)	29, 114, 428
GluI	GCNGC	2 cut(s)	466, 594
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
HinfI	GANTC	4 cut(s)	100, 379, 479, 779
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	109, 738
Hpy188I	TCNGA	3 cut(s)	310, 384, 607
Hpy188III	TCNNGA	2 cut(s)	241, 397
Hpy8I	GTNNAC	2 cut(s)	109, 738
Hpy99I	CGWCG	3 cut(s)	92, 95, 611
HpyAV	CCTTC	2 cut(s)	517, 828
HpyCH4IV	ACGT	2 cut(s)	93, 811
HpyCH4V	TGCA	7 cut(s)	259, 348, 508, 587, 623, 644, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	505, 593
HpyF3I	CTNAG	2 cut(s)	383, 488
HpySE526I	ACGT	2 cut(s)	93, 811
Hsp92II	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
Kzo9I	GATC	5 cut(s)	279, 443, 579, 668, 685
Lsp1109I	GCAGC	2 cut(s)	452, 580
LweI	GCATC	1 cut(s)	653
MaeI	CTAG	3 cut(s)	29, 114, 428
MaeII	ACGT	2 cut(s)	93, 811
MalI	GATC	5 cut(s)	281, 445, 581, 670, 687
MboI	GATC	5 cut(s)	279, 443, 579, 668, 685
MboII	GAAGA	5 cut(s)	80, 83, 278, 373, 412
MflI	RGATCY	2 cut(s)	668, 685
MluCI	AATT	3 cut(s)	560, 624, 699
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	8 cut(s)	164, 294, 336, 350, 401, 415, 607, 676
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	564
MseI	TTAA	5 cut(s)	270, 708, 789, 804, 837
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	505, 593
NcoI	CCATGG	2 cut(s)	215, 741
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	5 cut(s)	279, 443, 579, 668, 685
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	163, 219, 299, 512, 733, 745
NsiI	ATGCAT	1 cut(s)	646
NspI	RCATGY	2 cut(s)	512, 733
PaeI	GCATGC	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PctI	GAATGC	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	564
PfeI	GAWTC	4 cut(s)	100, 379, 479, 779
PflMI	CCANNNNNTGG	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	2 cut(s)	467, 595
Ple19I	CGATCG	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspPI	GGNCC	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	537
PsuI	RGATCY	2 cut(s)	668, 685
PvuI	CGATCG	1 cut(s)	446
RsaI	GTAC	2 cut(s)	152, 618
RsaNI	GTAC	2 cut(s)	151, 617
SaqAI	TTAA	5 cut(s)	270, 708, 789, 804, 837
SatI	GCNGC	2 cut(s)	466, 594
Sau3AI	GATC	5 cut(s)	279, 443, 579, 668, 685
Sau96I	GGNCC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	695
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	2 cut(s)	19, 751
SpeI	ACTAGT	1 cut(s)	113
SphI	GCATGC	1 cut(s)	512
Sse9I	AATT	3 cut(s)	560, 624, 699
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	3 cut(s)	29, 114, 428
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	215, 741
TaiI	ACGT	2 cut(s)	96, 814
TasI	AATT	3 cut(s)	560, 624, 699
TfiI	GAWTC	4 cut(s)	100, 379, 479, 779
Tru1I	TTAA	5 cut(s)	270, 708, 789, 804, 837
Tru9I	TTAA	5 cut(s)	270, 708, 789, 804, 837
TseI	GCWGC	2 cut(s)	465, 593
TspDTI	ATGAA	4 cut(s)	176, 284, 810, 818
Van91I	CCANNNNNTGG	1 cut(s)	562
XceI	RCATGY	2 cut(s)	512, 733
XmiI	GTMKAC	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	564
XspI	CTAG	3 cut(s)	29, 114, 428
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.