Rmu_sc0002955.1_g000021

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002955.1
OG0002353
Physical Location & Seq
Reverse (-)
117634 .. 118383
750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 750 bp
ctggtggagattccaacaggagatcgaacttggaatccccttgttgctcgtcggacatcatctcgtataagatcatcacccaactcttcttcgtttgatacggcggcgtcggagttcgagttctcagctcgattcgggtcaaatggatctactgctacctggccgatgagctcggcagatgagctgttcttgaatagaaagatccggcccatgaagctctccacccacctggaaaagccccaggcgccgttgcaagctgtcaacgaggaagatggagatgatctattcgagttcgggccgctgagaggcagagatctgaggatgagggacaagtccctgcggcggagaacgagatccatgtctccgatgagaaacatgccctttggtaattcattctgttgctttgcgaaagatatgaaggagggtgatttggggaaaaagaagaagaaaccggagaatggtgaggaggaggatgagaaggaagaagttgggagcttggagactactccttcggtttcagcttcgtcttcaagatcatcctcagctggaagaaactcgaaaagatgggtctttctgaaagattttctccacagaagtaaaactgaagggaggagtaataacaaattctgggccacaatctcattctcgagtagtggtaaggagaagaaaatagaggtaagtgttgggggagaaagtaggcagaaaattggcttgtccgagacaagtgttgatcgatgcggtagaaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

249

Amino Acids

27.95

Weight (kDa)

9.73

Isoelectric Point (pI)

60.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 59 - 225 3.5e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AciI CCGC 5 cut(s) 104, 299, 340, 343, 738
AclWI GGATC 3 cut(s) 154, 196, 348
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 2 cut(s) 107, 245
AfiI CCNNNNNNNGG 3 cut(s) 305, 342, 458
AgsI TTSAA 2 cut(s) 193, 531
AjnI CCWGG 3 cut(s) 158, 228, 240
AloI GAACNNNNNNTCC 4 cut(s) 19, 51, 104, 136
AluBI AGCT 8 cut(s) 128, 171, 184, 217, 257, 495, 521, 545
AluI AGCT 8 cut(s) 128, 171, 184, 217, 257, 495, 521, 545
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 3 cut(s) 366, 494, 713
AlwI GGATC 3 cut(s) 154, 196, 348
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 4 cut(s) 161, 206, 296, 630
ApoI RAATTY 1 cut(s) 623
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 207, 296, 630
AsuHPI GGTGA 3 cut(s) 69, 437, 473
AvaI CYCGRG 1 cut(s) 646
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 173
BbvCI CCTCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 266, 558
BceAI ACGGC 2 cut(s) 117, 232
BciT130I CCWGG 3 cut(s) 160, 230, 242
BcoDI GTCTC 3 cut(s) 366, 494, 713
BfoI RGCGCY 1 cut(s) 248
BglII AGATCT 1 cut(s) 313
BisI GCNGC 3 cut(s) 105, 299, 341
BlsI GCNGC 3 cut(s) 106, 300, 342
Bme1390I CCNGG 3 cut(s) 160, 230, 242
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 207, 296, 630
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 3 cut(s) 160, 230, 242
BmsI GCATC 1 cut(s) 725
BpiI GAAGAC 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 541
Bsa29I ATCGAT 1 cut(s) 733
BsaHI GRCGYC 2 cut(s) 107, 245
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 342, 458
BseBI CCWGG 3 cut(s) 160, 230, 242
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 3 cut(s) 327, 478, 536
BseLI CCNNNNNNNGG 3 cut(s) 305, 342, 458
BseMII CTCAG 4 cut(s) 138, 293, 308, 555
BseRI GAGGAG 3 cut(s) 479, 482, 625
BshFI GGCC 4 cut(s) 163, 208, 298, 632
BshNI GGYRCC 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 733
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 2 cut(s) 205, 452
BslFI GGGAC 2 cut(s) 319, 341
BslI CCNNNNNNNGG 3 cut(s) 305, 342, 458
BsmAI GTCTC 3 cut(s) 366, 494, 713
BsmFI GGGAC 2 cut(s) 319, 341
BsnI GGCC 4 cut(s) 163, 208, 298, 632
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
BspACI CCGC 5 cut(s) 104, 299, 340, 343, 738
BspANI GGCC 4 cut(s) 163, 208, 298, 632
BspCNI CTCAG 4 cut(s) 137, 294, 309, 554
BspDI ATCGAT 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 3 cut(s) 154, 196, 348
BspT107I GGYRCC 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
BssNI GRCGYC 2 cut(s) 107, 245
Bst2UI CCWGG 3 cut(s) 160, 230, 242
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 2 cut(s) 107, 245
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 124, 302, 317, 541
BstF5I GGATG 3 cut(s) 327, 478, 536
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 9 cut(s) 25, 74, 149, 204, 283, 316, 356, 536, 733
BstMAI GTCTC 3 cut(s) 366, 494, 713
BstMBI GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
BstMWI GCNNNNNNNGC 2 cut(s) 214, 244
BstNI CCWGG 3 cut(s) 160, 230, 242
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 3 cut(s) 158, 228, 240
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 4 cut(s) 146, 201, 313, 353
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 4 cut(s) 146, 201, 313, 353
Bsu15I ATCGAT 1 cut(s) 733
BsuRI GGCC 4 cut(s) 163, 208, 298, 632
BsuTUI ATCGAT 1 cut(s) 733
BtsCI GGATG 3 cut(s) 327, 478, 536
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 3 cut(s) 207, 296, 630
ClaI ATCGAT 1 cut(s) 733
CseI GACGC 1 cut(s) 96
CviAII CATG 3 cut(s) 211, 358, 376
DdeI CTNAG 4 cut(s) 124, 302, 317, 541
DinI GGCGCC 1 cut(s) 246
DpnI GATC 9 cut(s) 24, 73, 148, 203, 282, 315, 355, 535, 732
DpnII GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
EaeI YGGCCR 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
EciI GGCGGA 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 646
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 3 cut(s) 158, 228, 240
EcoT38I GRGCYC 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 246
EheI GGCGCC 1 cut(s) 246
FaeI CATG 3 cut(s) 214, 361, 379
FaiI YATR 5 cut(s) 68, 212, 359, 377, 416
FaqI GGGAC 2 cut(s) 319, 341
FatI CATG 3 cut(s) 210, 357, 375
Fnu4HI GCNGC 3 cut(s) 105, 299, 341
FokI GGATG 3 cut(s) 334, 485, 523
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 3 cut(s) 105, 299, 341
GlaI GCGC 1 cut(s) 246
GluI GCNGC 3 cut(s) 105, 299, 341
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 4 cut(s) 163, 208, 298, 632
HapII CCGG 2 cut(s) 205, 452
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 2 cut(s) 107, 245
Hin1II CATG 3 cut(s) 214, 361, 379
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 3 cut(s) 10, 34, 132
HpaII CCGG 2 cut(s) 205, 452
HphI GGTGA 3 cut(s) 69, 437, 473
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 6 cut(s) 54, 112, 318, 366, 576, 718
Hpy188III TCNNGA 3 cut(s) 190, 531, 646
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 2 cut(s) 54, 112
HpyAV CCTTC 4 cut(s) 412, 472, 519, 599
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 244
HpyF3I CTNAG 4 cut(s) 124, 302, 317, 541
Hsp92I GRCGYC 2 cut(s) 107, 245
Hsp92II CATG 3 cut(s) 214, 361, 379
HspAI GCGC 1 cut(s) 245
KasI GGCGCC 1 cut(s) 244
Kzo9I GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
LmnI GCTCC 1 cut(s) 492
LweI GCATC 1 cut(s) 725
MalI GATC 9 cut(s) 24, 73, 148, 203, 282, 315, 355, 535, 732
MboI GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
MboII GAAGA 9 cut(s) 78, 81, 281, 454, 457, 494, 519, 561, 676
MflI RGATCY 4 cut(s) 146, 201, 313, 353
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 3 cut(s) 388, 623, 705
Mly113I GGCGCC 1 cut(s) 245
MmeI TCCRAC 3 cut(s) 32, 38, 90
MspA1I CMGCKG 2 cut(s) 301, 545
MspI CCGG 2 cut(s) 205, 452
MspR9I CCNGG 3 cut(s) 160, 230, 242
MvaI CCWGG 3 cut(s) 160, 230, 242
MwoI GCNNNNNNNGC 2 cut(s) 214, 244
NarI GGCGCC 1 cut(s) 245
NdeII GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
NlaIII CATG 3 cut(s) 214, 361, 379
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 152
NspI RCATGY 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 646
PfeI GAWTC 3 cut(s) 10, 34, 132
PkrI GCNGC 3 cut(s) 106, 300, 342
PluTI GGCGCC 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 3 cut(s) 158, 228, 240
PspGI CCWGG 3 cut(s) 158, 228, 240
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 3 cut(s) 207, 296, 630
PsuI RGATCY 4 cut(s) 146, 201, 313, 353
PvuII CAGCTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 173
SatI GCNGC 3 cut(s) 105, 299, 341
Sau3AI GATC 9 cut(s) 22, 71, 146, 201, 280, 313, 353, 533, 730
Sau96I GGNCC 3 cut(s) 207, 296, 630
ScrFI CCNGG 3 cut(s) 160, 230, 242
SduI GDGCHC 1 cut(s) 173
SfaNI GCATC 1 cut(s) 725
SfoI GGCGCC 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 646
SlaI CTCGAG 1 cut(s) 646
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 3 cut(s) 388, 623, 705
SsiI CCGC 5 cut(s) 104, 299, 340, 343, 738
SspDI GGCGCC 1 cut(s) 244
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 3 cut(s) 158, 228, 240
TaqI TCGA 7 cut(s) 25, 117, 130, 288, 557, 647, 733
TasI AATT 3 cut(s) 388, 623, 705
TauI GCSGC 3 cut(s) 107, 301, 343
TfiI GAWTC 3 cut(s) 10, 34, 132
TspDTI ATGAA 3 cut(s) 227, 381, 431
XapI RAATTY 1 cut(s) 623
XceI RCATGY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.