Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003940.1

Orthogroup ID

OG0004868

Physical Location & Seq

Genomic Coordinates Forward (+)

20051 .. 23577

Gene Structure 3527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atgctagttaggaaagtggttgggcttgatgagatgaagaggagcagcctgggcctgacaccattggcggtggtcagctgcggctctgccctaactccggcggccctttttcggccacctccgggggtcaagagaaccaagacgatgatcgggctgcttagagtggtggcatttgagttacagctttattgtgaggttgttatgctcattgagcttacatttaaatttggagagagtgtgttagtctcatctctcgccactcaccgacgctgcccaaaaccagtctcatctttcttttcctctcatgaatcaggaaccatcatcattgtcacctctgattattatcatgggttgaggaaggagtatctagaaggtgtttattttggtctatgcgtatgcgatggtcagttctttgatgttggaaacatgttttctcccacattttttgtccatcgtagtttgtcttatctcatggatgagatgcctcaggaagctttaaacgatgcaatgcaagctcaagtaatttccccaatatggcacattgcatcttatctacaggtcgctgccctttctgcactcggaatggagactgaggcgcaatcagcactgaaggagggtactgtgcttgaaaccaaaaggaacactgcagctggacacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

220

Amino Acids

24.23

Weight (kDa)

7.0

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	133 - 186	2.3e-19	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004868)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g14100
malus_domestica	MD01G1056900.v1.1 MD14G1186200.v1.1 MD14G1186400.v1.1 MD14G1186600.v1.1
pyrus_communis	pycom01g08300 pycom01g08310 pycom01g08390 pycom01g08420 pycom01g08480 pycom01g08650 pycom01g08680 pycom01g08710 pycom02g23240
rosa_chinensis	RchiOBHm_Chr1g0324601 RchiOBHm_Chr1g0354681 RchiOBHm_Chr1g0354861
rosa_laevigata	RLG00000028186
rosa_multiflora	Rmu_sc0003940.1_g000003 Rmu_sc0006632.1_g000017
rosa_roxburghii	Rroxscaffold_4G00325320
rosa_rugosa	Rorug01G0244200 Rorug01G0244200 Rorug01G0244300
rosa_samantha	Rh1AG255200 Rh1AG256400 Rh1BG225700 Rh1CG239700
rosa_wichuraiana	Rw1G022330 Rw1G022370 Rw1G022400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	68, 81, 101
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	6 cut(s)	78, 184, 214, 494, 515, 650
AluI	AGCT	6 cut(s)	78, 184, 214, 494, 515, 650
Alw26I	GTCTC	3 cut(s)	250, 289, 581
AoxI	GGCC	3 cut(s)	52, 102, 113
ApeKI	GCWGC	6 cut(s)	45, 78, 154, 270, 563, 647
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	2 cut(s)	52, 103
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	254, 322
AxyI	CCTNAGG	1 cut(s)	486
BbvI	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
BccI	CCATC	3 cut(s)	326, 395, 459
BciT130I	CCWGG	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	250, 289, 581
BfaI	CTAG	2 cut(s)	5, 368
BfmI	CTRYAG	2 cut(s)	554, 645
BisI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
BlsI	GCNGC	8 cut(s)	47, 80, 83, 103, 156, 272, 565, 649
Bme1390I	CCNGG	2 cut(s)	50, 123
BmgT120I	GGNCC	2 cut(s)	52, 103
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	50, 123
BmsI	GCATC	3 cut(s)	471, 493, 554
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	49, 122
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
Bse1I	ACTGG	1 cut(s)	281
Bse21I	CCTNAGG	1 cut(s)	486
Bse3DI	GCAATG	2 cut(s)	513, 540
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	49, 122
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
BseMI	GCAATG	2 cut(s)	513, 540
BseMII	CTCAG	2 cut(s)	500, 582
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	54, 104, 115
BsiSI	CCGG	2 cut(s)	98, 122
BslI	CCNNNNNNNGG	4 cut(s)	97, 111, 122, 534
BsmAI	GTCTC	3 cut(s)	250, 289, 581
BsnI	GGCC	3 cut(s)	54, 104, 115
Bsp143I	GATC	1 cut(s)	147
BspACI	CCGC	3 cut(s)	68, 81, 101
BspANI	GGCC	3 cut(s)	54, 104, 115
BspCNI	CTCAG	2 cut(s)	499, 583
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	316
BspMAI	CTGCAG	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	513, 540
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	49, 122
BssMI	GATC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	158, 486, 591
BstF5I	GGATG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	3 cut(s)	250, 289, 581
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
BstNI	CCWGG	1 cut(s)	50
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	48, 121
BstSFI	CTRYAG	2 cut(s)	554, 645
BstV1I	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
Bsu36I	CCTNAGG	1 cut(s)	486
BsuRI	GGCC	3 cut(s)	54, 104, 115
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	605, 642
Cac8I	GCNNGC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	598
Cfr13I	GGNCC	2 cut(s)	52, 103
CseI	GACGC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	618
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	4 cut(s)	305, 347, 427, 472
CviQI	GTAC	1 cut(s)	618
DdeI	CTNAG	3 cut(s)	158, 486, 591
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DraI	TTTAAA	2 cut(s)	223, 498
EaeI	YGGCCR	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	629
Eco81I	CCTNAGG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	308, 350, 430, 475
FaiI	YATR	8 cut(s)	203, 306, 348, 391, 397, 428, 473, 535
FatI	CATG	4 cut(s)	304, 346, 426, 471
Fnu4HI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
FspBI	CTAG	2 cut(s)	5, 368
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
HaeIII	GGCC	3 cut(s)	54, 104, 115
HapII	CCGG	2 cut(s)	98, 122
HgaI	GACGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	4 cut(s)	308, 350, 430, 475
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	2 cut(s)	98, 122
HphI	GGTGA	2 cut(s)	254, 322
Hpy188I	TCNGA	2 cut(s)	337, 581
Hpy188III	TCNNGA	5 cut(s)	130, 305, 312, 368, 488
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	3 cut(s)	352, 365, 604
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4V	TGCA	5 cut(s)	506, 511, 545, 575, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
HpyF3I	CTNAG	3 cut(s)	158, 486, 591
Hsp92II	CATG	4 cut(s)	308, 350, 430, 475
HspAI	GCGC	1 cut(s)	596
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	6 cut(s)	57, 65, 141, 257, 550, 659
LweI	GCATC	3 cut(s)	471, 493, 554
MaeI	CTAG	2 cut(s)	5, 368
MaeIII	GTNAC	2 cut(s)	177, 328
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	1 cut(s)	49
MluCI	AATT	2 cut(s)	224, 522
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	9 cut(s)	33, 129, 187, 310, 343, 348, 495, 586, 607
MseI	TTAA	2 cut(s)	222, 497
MspA1I	CMGCKG	2 cut(s)	78, 650
MspI	CCGG	2 cut(s)	98, 122
MspR9I	CCNGG	2 cut(s)	50, 123
MvaI	CCWGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	5 cut(s)	51, 211, 512, 572, 602
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	308, 350, 430, 475
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	430
PagI	TCATGA	1 cut(s)	304
PciI	ACATGT	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	8 cut(s)	47, 80, 83, 103, 156, 272, 565, 649
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	316
PspPI	GGNCC	2 cut(s)	52, 103
PstI	CTGCAG	1 cut(s)	649
PvuII	CAGCTG	2 cut(s)	78, 650
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	222, 497
SatI	GCNGC	8 cut(s)	46, 79, 82, 102, 155, 271, 564, 648
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	2 cut(s)	52, 103
ScrFI	CCNGG	2 cut(s)	50, 123
SfaNI	GCATC	3 cut(s)	471, 493, 554
SfcI	CTRYAG	2 cut(s)	554, 645
SmiI	ATTTAAAT	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	2 cut(s)	224, 522
SsiI	CCGC	3 cut(s)	68, 81, 101
SspMI	CTAG	2 cut(s)	5, 368
StyD4I	CCNGG	2 cut(s)	48, 121
SwaI	ATTTAAAT	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	622
TasI	AATT	2 cut(s)	224, 522
TauI	GCSGC	2 cut(s)	84, 104
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	222, 497
Tru9I	TTAA	2 cut(s)	222, 497
TscAI	CASTG	2 cut(s)	612, 649
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	6 cut(s)	45, 78, 154, 270, 563, 647
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	50, 321
TspRI	CASTG	2 cut(s)	612, 649
XapI	RAATTY	1 cut(s)	224
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	430
XspI	CTAG	2 cut(s)	5, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.