Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004296.1

Orthogroup ID

OG0004114

Physical Location & Seq

Genomic Coordinates Reverse (-)

40408 .. 41139

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgctgacttatcctgccaaatcaatgatggcaaaagaggcatgtaccattgctaggataccccgcaaaagttggagtaggaagcaaataaaggagacgttaaaggtactgatcaatatactggataagagaggccctgtaagcggggaagacctcattgaggcagctagctccgaagtgagtccaagtgagctactggactatgcaatttcaacaatgaagaatctgaagtgtgggaagcaccaaattgtagcttgcaaggagaatccaatctcaaatgtgatggagtatggactggagactcttcctctcctaacaactgagccccttgatgttcaccgtgatgcagtttttgtatatgaaactgttgttctacaataccccgaagtcggcagtgaatattcaatggtaaagttgtgtgtagacaccatgttaaaatacaattaccttatgaagggaactgaaccatgttgcaaaggctctggtaaaaaggtggagtgcaagtgtggcacgtctaaagatgatggagaaagattcttgcaatgcaacttgtgtgaggcctatgagcacttgaagtgcagtgggatggataaaactgacaccgaggcatatgtgcatatctgtgattgctgccttacagaacagaaggaaaagcagcttattgaggaagcaaaggagaagagcaaggcagagctagacattattggagaagatgaagtcaggcaaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000228 GO:0000280 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0006323 GO:0006355 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007059 GO:0007060 GO:0007140 GO:0007275 GO:0007276 GO:0008134 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010032 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0030261 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033613 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044703 GO:0045132 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0051321 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0070013 GO:0070192 GO:0071103 GO:0071840 GO:0080090 GO:0097159 GO:0098813 GO:0140013 GO:1901363 GO:1903046 GO:1903506 GO:1990188 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

243

Amino Acids

27.36

Weight (kDa)

5.34

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_plant_repro	PF25874	25 - 101	1.4e-09	Winged helix-turn-helix domain in plant reproductive proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07714 ATMG00550
malus_domestica	MD10G1001200.v1.1
rosa_chinensis	RchiOBHm_Chr2g0092391 RchiOBHm_Chr2g0092501 RchiOBHm_Chr2g0092521 RchiOBHm_Chr2g0134011 RchiOBHm_Chr6g0294291
rosa_laevigata	RLG00000016321
rosa_multiflora	Rmu_co8274023.1_g000001 Rmu_sc0002503.1_g000019 Rmu_sc0004296.1_g000006 Rmu_sc0004296.1_g000007 Rmu_sc0004296.1_g000011 Rmu_sc0004296.1_g000012
rosa_roxburghii	Rroxscaffold_2G00110570 Rroxscaffold_2G00149000 Rroxscaffold_2G00149020
rosa_rugosa	Rorug02G0027300
rosa_samantha	Rh2AG071600 Rh2BG071500 Rh2BG073800 Rh2CG072900 Rh2CG075000 Rh2CG350900 Rh2CG351000 Rh2DG070100 Rh2DG072200 Rh2DG390100 Rh6AG355700 Rh6CG369700
rosa_wichuraiana	Rw2G005990 Rw6G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	64, 144
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	46, 108
AfiI	CCNNNNNNNGG	5 cut(s)	54, 143, 160, 389, 454
AgsI	TTSAA	3 cut(s)	213, 405, 574
AjiI	CACGTC	1 cut(s)	513
AluBI	AGCT	6 cut(s)	167, 171, 193, 254, 658, 694
AluI	AGCT	6 cut(s)	167, 171, 193, 254, 658, 694
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	2 cut(s)	89, 293
AoxI	GGCC	2 cut(s)	133, 558
ApeKI	GCWGC	3 cut(s)	164, 630, 655
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	3 cut(s)	176, 617, 667
BccI	CCATC	4 cut(s)	22, 277, 518, 580
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	89, 293
BfaI	CTAG	3 cut(s)	54, 168, 695
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	165, 631, 656
BlsI	GCNGC	3 cut(s)	166, 632, 657
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	334
BmtI	GCTAGC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	603
BsaXI	ACNNNNNCTCC	2 cut(s)	488, 518
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 143, 160, 389, 454
Bse1I	ACTGG	3 cut(s)	126, 201, 300
Bse3DI	GCAATG	2 cut(s)	48, 548
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	1 cut(s)	591
BseLI	CCNNNNNNNGG	5 cut(s)	54, 143, 160, 389, 454
BseMI	GCAATG	2 cut(s)	48, 548
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	3 cut(s)	126, 201, 300
BseXI	GCAGC	3 cut(s)	176, 617, 667
BsgI	GTGCAG	1 cut(s)	598
BshFI	GGCC	2 cut(s)	135, 560
BsiHKAI	GWGCWC	1 cut(s)	570
BslI	CCNNNNNNNGG	5 cut(s)	54, 143, 160, 389, 454
BsmAI	GTCTC	2 cut(s)	89, 293
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	135, 560
Bsp1286I	GDGCHC	2 cut(s)	327, 570
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	64, 144
BspANI	GGCC	2 cut(s)	135, 560
BspCNI	CTCAG	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	48, 548
BsrI	ACTGG	3 cut(s)	126, 201, 300
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	341, 367
Bst6I	CTCTTC	2 cut(s)	309, 674
BstC8I	GCNNGC	2 cut(s)	169, 256
BstDEI	CTNAG	1 cut(s)	321
BstENI	CCTNNNNNAGG	2 cut(s)	158, 452
BstF5I	GGATG	1 cut(s)	591
BstKTI	GATC	1 cut(s)	114
BstMAI	GTCTC	2 cut(s)	89, 293
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 141, 507
BstNSI	RCATGY	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	176, 617, 667
BstV2I	GAAGAC	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	135, 560
BtrI	CACGTC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	591
BtsI	GCAGTG	2 cut(s)	400, 586
BtsIMutI	CAGTG	2 cut(s)	400, 586
Cac8I	GCNNGC	2 cut(s)	169, 256
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	45, 107
CviAII	CATG	3 cut(s)	42, 430, 468
CviQI	GTAC	2 cut(s)	45, 107
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	309, 674
EarI	CTCTTC	2 cut(s)	309, 674
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	248
EcoNI	CCTNNNNNAGG	2 cut(s)	158, 452
EcoO109I	RGGNCCY	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	3 cut(s)	45, 433, 471
FatI	CATG	3 cut(s)	41, 429, 467
FauI	CCCGC	2 cut(s)	71, 137
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	111
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	165, 631, 656
FokI	GGATG	1 cut(s)	598
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	3 cut(s)	165, 631, 656
FspBI	CTAG	3 cut(s)	54, 168, 695
GluI	GCNGC	3 cut(s)	165, 631, 656
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	135, 560
Hin1II	CATG	3 cut(s)	45, 433, 471
HinfI	GANTC	5 cut(s)	181, 223, 265, 301, 534
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	337, 424
Hpy188I	TCNGA	2 cut(s)	175, 228
Hpy8I	GTNNAC	2 cut(s)	337, 424
HpyAV	CCTTC	2 cut(s)	448, 640
HpyCH4III	ACNGT	2 cut(s)	341, 367
HpyCH4IV	ACGT	2 cut(s)	98, 512
HpyCH4V	TGCA	9 cut(s)	206, 258, 347, 474, 501, 541, 546, 579, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 141, 507
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	98, 512
Hsp92II	CATG	3 cut(s)	45, 433, 471
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	111
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	1 cut(s)	176
LpnPI	CCDG	7 cut(s)	27, 107, 150, 182, 281, 468, 706
Lsp1109I	GCAGC	3 cut(s)	176, 617, 667
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	3 cut(s)	54, 168, 695
MaeII	ACGT	2 cut(s)	98, 512
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	5 cut(s)	161, 232, 296, 691, 722
MhlI	GDGCHC	2 cut(s)	327, 570
MluCI	AATT	3 cut(s)	207, 246, 442
MlyI	GAGTC	2 cut(s)	190, 295
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	31, 125, 154, 164, 318, 550, 598, 658
MseI	TTAA	2 cut(s)	101, 434
MslI	CAYNNNNRTG	2 cut(s)	342, 621
MwoI	GCNNNNNNNGC	3 cut(s)	38, 141, 507
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	45, 433, 471
NspI	RCATGY	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	674
PfeI	GAWTC	3 cut(s)	223, 265, 534
PkrI	GCNGC	3 cut(s)	166, 632, 657
PleI	GAGTC	2 cut(s)	189, 295
PpsI	GAGTC	2 cut(s)	189, 295
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	2 cut(s)	46, 108
RsaNI	GTAC	2 cut(s)	45, 107
RseI	CAYNNNNRTG	2 cut(s)	342, 621
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	101, 434
SatI	GCNGC	3 cut(s)	165, 631, 656
Sau3AI	GATC	1 cut(s)	111
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	190, 295
SduI	GDGCHC	2 cut(s)	327, 570
SfaNI	GCATC	1 cut(s)	334
SmiMI	CAYNNNNRTG	2 cut(s)	342, 621
Sse9I	AATT	3 cut(s)	207, 246, 442
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	2 cut(s)	64, 144
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	3 cut(s)	54, 168, 695
StuI	AGGCCT	1 cut(s)	560
TaaI	ACNGT	2 cut(s)	341, 367
TaiI	ACGT	2 cut(s)	101, 515
TasI	AATT	3 cut(s)	207, 246, 442
TfiI	GAWTC	3 cut(s)	223, 265, 534
Tru1I	TTAA	2 cut(s)	101, 434
Tru9I	TTAA	2 cut(s)	101, 434
TscAI	CASTG	2 cut(s)	400, 586
TseI	GCWGC	3 cut(s)	164, 630, 655
TspDTI	ATGAA	4 cut(s)	233, 375, 467, 729
TspRI	CASTG	2 cut(s)	400, 586
XagI	CCTNNNNNAGG	2 cut(s)	158, 452
XceI	RCATGY	1 cut(s)	45
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	3 cut(s)	54, 168, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.