Rmu_sc0004576.1_g000006

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004576.1
OG0002977
Physical Location & Seq
Reverse (-)
16494 .. 17198
705 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
atgaaccctaattctgctccaatcgaacagtttcctaatgttgtcccacccattttcatacccccaaaagcaaactcaggcatatctgagttgaacggcctatttgaaacatgcatcaatccccaatcatatgactcttctcttgttgattccttatttgatgcactttcttcaccagatttctcaaatatcaacgattctagccacacgagttttttgaaccagcctttaatagaagaacatatcgggactactaataattttcccactgctgtagtggcctcttttggtttggatgctaaaattgattatattgctaaaggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccagtccattgcttaagacgcttcttgtcaccgggcctcctctgccccagtggcggaatccttctactatacagaccctagaaatcccactcatatcactcgaaggttgcgaggcaattcttgcaagttttaatgagaaaccagtgacaaaggcatgttcttctaaccatctgaattccatatcctgtcctggattttctcaaatatgttcagctaccatgtggaatttcaacaatgttcctcctgtgatatcatgcaaaagttcgaggccgctaaattcgagttcatattttgatcaacaaatccctgctgccaagcaacgtaggcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

234

Amino Acids

25.39

Weight (kDa)

5.59

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 71 - 178 3.2e-20 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 424, 641
AcsI RAATTY 3 cut(s) 544, 595, 646
AfiI CCNNNNNNNGG 2 cut(s) 341, 423
AflII CTTAAG 1 cut(s) 383
AgsI TTSAA 5 cut(s) 94, 107, 220, 601, 701
AjnI CCWGG 1 cut(s) 559
AluBI AGCT 1 cut(s) 584
AluI AGCT 1 cut(s) 584
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 4 cut(s) 97, 279, 404, 638
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 3 cut(s) 544, 595, 646
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 404
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 165, 391
BauI CACGAG 1 cut(s) 208
BbvI GCAGC 1 cut(s) 667
BccI CCATC 2 cut(s) 358, 546
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 1 cut(s) 664
BcnI CCSGG 1 cut(s) 403
BfaI CTAG 2 cut(s) 201, 449
BfmI CTRYAG 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 383
BglI GCCNNNNNGGC 1 cut(s) 421
BisI GCNGC 2 cut(s) 641, 681
BlsI GCNGC 2 cut(s) 642, 682
Bme1390I CCNGG 2 cut(s) 403, 561
BmgT120I GGNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 403, 561
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 3 cut(s) 123, 151, 286
BmuI ACTGGG 1 cut(s) 412
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpuMI CCSGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 423
Bse1I ACTGG 3 cut(s) 372, 418, 512
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 561
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 2 cut(s) 341, 423
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 2 cut(s) 78, 90
BseNI ACTGG 3 cut(s) 372, 418, 512
BseRI GAGGAG 1 cut(s) 399
BseXI GCAGC 1 cut(s) 667
BshFI GGCC 4 cut(s) 99, 281, 406, 640
BsiSI CCGG 1 cut(s) 402
BslFI GGGAC 2 cut(s) 29, 262
BslI CCNNNNNNNGG 2 cut(s) 341, 423
BsmFI GGGAC 2 cut(s) 29, 262
BsnI GGCC 4 cut(s) 99, 281, 406, 640
Bsp143I GATC 1 cut(s) 664
BspACI CCGC 2 cut(s) 424, 641
BspANI GGCC 4 cut(s) 99, 281, 406, 640
BspCNI CTCAG 2 cut(s) 79, 89
BspTI CTTAAG 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 377
BsrI ACTGG 3 cut(s) 372, 418, 512
BssMI GATC 1 cut(s) 664
BssSI CACGAG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 142
BstAFI CTTAAG 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 76, 87
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 667
BstMBI GATC 1 cut(s) 664
BstMWI GCNNNNNNNGC 6 cut(s) 278, 388, 412, 421, 491, 694
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 2 cut(s) 114, 528
BstSCI CCNGG 2 cut(s) 401, 559
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 667
BsuRI GGCC 4 cut(s) 99, 281, 406, 640
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 3 cut(s) 267, 425, 519
Cac8I GCNNGC 1 cut(s) 357
CaiI CAGNNNCTG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 404
CseI GACGC 1 cut(s) 397
CviAII CATG 4 cut(s) 111, 525, 589, 624
DdeI CTNAG 2 cut(s) 76, 87
DpnI GATC 1 cut(s) 666
DpnII GATC 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
EciI GGCGGA 1 cut(s) 439
Eco32I GATATC 1 cut(s) 621
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 559
EcoRV GATATC 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 116
FaeI CATG 4 cut(s) 114, 528, 592, 627
FaqI GGGAC 2 cut(s) 29, 262
FatI CATG 4 cut(s) 110, 524, 588, 623
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 641, 681
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 641, 681
FspBI CTAG 2 cut(s) 201, 449
GluI GCNGC 2 cut(s) 641, 681
HaeIII GGCC 4 cut(s) 99, 281, 406, 640
HapII CCGG 1 cut(s) 402
HgaI GACGC 1 cut(s) 397
Hin1II CATG 4 cut(s) 114, 528, 592, 627
HinfI GANTC 5 cut(s) 134, 149, 197, 328, 427
HpaII CCGG 1 cut(s) 402
HphI GGTGA 2 cut(s) 165, 391
Hpy188I TCNGA 3 cut(s) 88, 363, 543
Hpy188III TCNNGA 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 441, 467
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 5 cut(s) 114, 164, 355, 494, 627
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 388, 412, 421, 491, 694
HpyF3I CTNAG 2 cut(s) 76, 87
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 4 cut(s) 114, 528, 592, 627
Ksp22I TGATCA 1 cut(s) 664
Kzo9I GATC 1 cut(s) 664
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 3 cut(s) 123, 151, 286
MaeI CTAG 2 cut(s) 201, 449
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 2 cut(s) 397, 514
MalI GATC 1 cut(s) 666
MboI GATC 1 cut(s) 664
MboII GAAGA 4 cut(s) 129, 162, 248, 522
MluCI AATT 7 cut(s) 10, 259, 303, 486, 544, 595, 646
MlyI GAGTC 2 cut(s) 128, 337
MnlI CCTC 7 cut(s) 292, 345, 417, 420, 475, 621, 630
Mph1103I ATGCAT 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 230, 384, 501
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 403, 561
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 6 cut(s) 278, 388, 412, 421, 491, 694
NciI CCSGG 1 cut(s) 403
NdeI CATATG 1 cut(s) 130
NdeII GATC 1 cut(s) 664
NlaIII CATG 4 cut(s) 114, 528, 592, 627
NmuCI GTSAC 2 cut(s) 397, 514
NsiI ATGCAT 1 cut(s) 116
NspI RCATGY 2 cut(s) 114, 528
PcsI WCGNNNNNNNCGW 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 149, 197, 427
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 2 cut(s) 642, 682
PleI GAGTC 2 cut(s) 128, 336
PpsI GAGTC 2 cut(s) 128, 336
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 1 cut(s) 404
PstNI CAGNNNCTG 1 cut(s) 361
SaqAI TTAA 3 cut(s) 230, 384, 501
SatI GCNGC 2 cut(s) 641, 681
Sau3AI GATC 1 cut(s) 664
Sau96I GGNCC 1 cut(s) 404
SchI GAGTC 2 cut(s) 128, 337
ScrFI CCNGG 2 cut(s) 403, 561
SetI ASST 3 cut(s) 478, 586, 694
SfaNI GCATC 3 cut(s) 123, 151, 286
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 7 cut(s) 10, 259, 303, 486, 544, 595, 646
SsiI CCGC 2 cut(s) 424, 641
SspMI CTAG 2 cut(s) 201, 449
StyD4I CCNGG 2 cut(s) 401, 559
TaaI ACNGT 1 cut(s) 30
TaiI ACGT 1 cut(s) 694
TaqI TCGA 4 cut(s) 24, 471, 635, 650
TasI AATT 7 cut(s) 10, 259, 303, 486, 544, 595, 646
TauI GCSGC 1 cut(s) 643
TfiI GAWTC 3 cut(s) 149, 197, 427
Tru1I TTAA 3 cut(s) 230, 384, 501
Tru9I TTAA 3 cut(s) 230, 384, 501
TscAI CASTG 3 cut(s) 274, 425, 519
TseFI GTSAC 2 cut(s) 397, 514
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 2 cut(s) 397, 514
TspDTI ATGAA 3 cut(s) 17, 46, 645
TspRI CASTG 3 cut(s) 274, 425, 519
Vha464I CTTAAG 1 cut(s) 383
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 3 cut(s) 544, 595, 646
XceI RCATGY 2 cut(s) 114, 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 2 cut(s) 201, 449
Zsp2I ATGCAT 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.