Rmu_sc0004608.1_g000002

Transcription factor JUNGBRUNNEN 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004608.1
OG0002908
Physical Location & Seq
Forward (+)
4142 .. 6615
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
atggaagtgcagaagatgatgatgagggattcgattaacaacactaaggatgatgcagactatcttccggggtatcgctttcatcccactgatgaagaacttgtgaggttttacctcaggaggaaggtggagaacaaacctattcgtcttgagctcatcaaacttattgacatctacaaatatgatccctgggatcttccaaaagctagtggtttagttggggagaaggagtggtacttcttttgcagaaggggaaagaaatacagaaatagcataagacctaatagggtcacaaaatctgggttttggaaagcaaccggcattgacaaacctgtatattcggttgaaggagaatttcacacttgcattggcttaaagaaatccctagtatactatagaggaagtgctggaaagggtaccaaaacagattggatgatgcacgaatttcgtcttccagctactaatgcaagcactggtgctaattctaatatcaatgacattactcaagaagctgaagtttggaccctatgcagaattttgaaacgaaacaattcttctagaaagtatgaaacaaattggcagaagacaacttccaagcaaagtgcagctgattcaagttcgaaaacatgcagttctgagtcggatggaagttttggtgctccggctgctcagaagaatgatcaacttgaaaggatcagtactcctaattttaacaatgatcatctgtgcgaagggaacaatcatatctcagcaggccagctgaccttaaaagatgaagtagttgatccaatggtgaactcatacataaacttctggaatctaaatgaatatgagatgttaagatcagataatcccaactgggatgagctgagtccaatgatcgactgcgttctaaatccctccccgctatatcgatcggcgtcgaaacgggggaaagcccacctagacaaaaagctaaaaactaaactaaaggcatgcaagaagcacaacaacggtccatggcccatggcccaaaatcataacccaacccatcaaggagatccacaggcctcaaaccaagagaccactgccatagatctgcgttgcaaccatccaatactgccgccccgctctgacgaccgacgacgactcccttccacaaccatagaactcataaaacaaggccaacgaaccagaaaaggcaacactgtgcccatcccagatcagaggccgctgcctctgtgcacgatgcaaccacatcagattctggtagaaagacgtctccacccgcccaaccaacctaccaccaacactcaccaatcaacaaagagtccagccgccagtctcctagtcctccgacctgtcgatcaccaccactgcacaaaaccagatcagaaaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

460

Amino Acids

52.76

Weight (kDa)

9.41

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 23 - 151 5.7e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1261
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 1110
AccI GTMKAC 1 cut(s) 390
AciI CCGC 6 cut(s) 905, 1103, 1108, 1211, 1268, 1317
AclWI GGATC 5 cut(s) 179, 201, 701, 779, 1034
AcsI RAATTY 3 cut(s) 353, 443, 534
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 2 cut(s) 920, 1258
AfaI GTAC 3 cut(s) 236, 418, 700
AgsI TTSAA 4 cut(s) 347, 541, 615, 689
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 8 cut(s) 154, 206, 458, 512, 608, 760, 868, 955
AluI AGCT 8 cut(s) 154, 206, 458, 512, 608, 760, 868, 955
Alw21I GWGCWC 3 cut(s) 156, 661, 1226
Alw26I GTCTC 3 cut(s) 1055, 1265, 1328
Alw44I GTGCAC 1 cut(s) 1222
AlwI GGATC 5 cut(s) 179, 201, 701, 779, 1034
AlwNI CAGNNNCTG 1 cut(s) 1246
AoxI GGCC 6 cut(s) 754, 1001, 1008, 1047, 1162, 1208
ApaLI GTGCAC 1 cut(s) 1222
ApeKI GCWGC 3 cut(s) 605, 665, 1213
ApoI RAATTY 3 cut(s) 353, 443, 534
Asp700I GAANNNNTTC 1 cut(s) 550
Asp718I GGTACC 1 cut(s) 416
AspS9I GGNCC 4 cut(s) 522, 995, 1002, 1009
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 805, 1286, 1340
AsuII TTCGAA 1 cut(s) 620
AvaII GGWCC 2 cut(s) 522, 995
AxyI CCTNAGG 1 cut(s) 116
BaeGI GKGCMC 2 cut(s) 1194, 1226
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 156
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbsI GAAGAC 2 cut(s) 443, 590
Bbv12I GWGCWC 3 cut(s) 156, 661, 1226
BbvI GCAGC 3 cut(s) 617, 652, 1200
BccI CCATC 4 cut(s) 638, 1038, 1098, 1202
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 1 cut(s) 190
BclI TGATCA 2 cut(s) 679, 718
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 1055, 1265, 1328
BfaI CTAG 5 cut(s) 207, 386, 558, 944, 1328
BfmI CTRYAG 1 cut(s) 394
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 6 cut(s) 606, 666, 1103, 1211, 1214, 1317
BlsI GCNGC 6 cut(s) 607, 667, 1104, 1212, 1215, 1318
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 69, 190
Bme18I GGWCC 2 cut(s) 522, 995
BmgT120I GGNCC 4 cut(s) 522, 995, 1002, 1009
BmiI GGNNCC 2 cut(s) 418, 524
BmrFI CCNGG 2 cut(s) 69, 190
BmrI ACTGGG 1 cut(s) 868
BmsI GCATC 3 cut(s) 43, 426, 1218
BmuI ACTGGG 1 cut(s) 868
BpiI GAAGAC 2 cut(s) 443, 590
Bpu14I TTCGAA 1 cut(s) 620
BpuEI CTTGAG 2 cut(s) 170, 489
BpuMI CCSGG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 913
BsaHI GRCGYC 2 cut(s) 920, 1258
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 5 cut(s) 68, 188, 189, 998, 1005
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 1113, 1143
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 3 cut(s) 478, 863, 1320
Bse21I CCTNAGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 190
BseCI ATCGAT 1 cut(s) 913
BseDI CCNNGG 5 cut(s) 68, 188, 189, 998, 1005
BseGI GGATG 7 cut(s) 55, 82, 438, 649, 868, 1090, 1194
BseMII CTCAG 5 cut(s) 130, 627, 683, 762, 860
BseNI ACTGG 3 cut(s) 478, 863, 1320
BseSI GKGCMC 2 cut(s) 1194, 1226
BseXI GCAGC 3 cut(s) 617, 652, 1200
BsgI GTGCAG 3 cut(s) 29, 624, 1342
Bsh1285I CGRYCG 2 cut(s) 917, 1120
BshFI GGCC 6 cut(s) 756, 1003, 1010, 1049, 1164, 1210
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 1 cut(s) 913
BsiEI CGRYCG 2 cut(s) 917, 1120
BsiHKAI GWGCWC 3 cut(s) 156, 661, 1226
BsiSI CCGG 3 cut(s) 68, 318, 662
BsmAI GTCTC 3 cut(s) 1055, 1265, 1328
BsmBI CGTCTC 1 cut(s) 1265
BsnI GGCC 6 cut(s) 756, 1003, 1010, 1049, 1164, 1210
Bso31I GGTCTC 1 cut(s) 1055
Bsp119I TTCGAA 1 cut(s) 620
Bsp1286I GDGCHC 4 cut(s) 156, 661, 1194, 1226
Bsp19I CCATGG 2 cut(s) 998, 1005
BspACI CCGC 6 cut(s) 905, 1103, 1108, 1211, 1268, 1317
BspANI GGCC 6 cut(s) 756, 1003, 1010, 1049, 1164, 1210
BspCNI CTCAG 5 cut(s) 129, 628, 682, 761, 861
BspDI ATCGAT 1 cut(s) 913
BspLI GGNNCC 2 cut(s) 418, 524
BspPI GGATC 5 cut(s) 179, 201, 701, 779, 1034
BspT104I TTCGAA 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 1055
BsrBI CCGCTC 1 cut(s) 1110
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 3 cut(s) 478, 863, 1320
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 5 cut(s) 68, 188, 189, 998, 1005
BssNAI GTATAC 1 cut(s) 391
BssNI GRCGYC 2 cut(s) 920, 1258
BssT1I CCWWGG 2 cut(s) 998, 1005
Bst1107I GTATAC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 2 cut(s) 995, 1189
BstACI GRCGYC 2 cut(s) 920, 1258
BstBI TTCGAA 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 469, 754, 758, 976
BstDEI CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
BstDSI CCRYGG 2 cut(s) 998, 1005
BstF5I GGATG 7 cut(s) 55, 82, 438, 649, 868, 1090, 1194
BstMAI GTCTC 3 cut(s) 1055, 1265, 1328
BstMCI CGRYCG 2 cut(s) 917, 1120
BstMWI GCNNNNNNNGC 2 cut(s) 464, 665
BstNI CCWGG 1 cut(s) 190
BstNSI RCATGY 2 cut(s) 630, 978
BstSCI CCNGG 2 cut(s) 67, 188
BstSFI CTRYAG 1 cut(s) 394
BstSLI GKGCMC 2 cut(s) 1194, 1226
BstV1I GCAGC 3 cut(s) 617, 652, 1200
BstV2I GAAGAC 2 cut(s) 443, 590
BstX2I RGATCY 3 cut(s) 193, 1039, 1075
BstYI RGATCY 3 cut(s) 193, 1039, 1075
BstZ17I GTATAC 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 913
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 6 cut(s) 756, 1003, 1010, 1049, 1164, 1210
BsuTUI ATCGAT 1 cut(s) 913
BtgI CCRYGG 2 cut(s) 998, 1005
BtsCI GGATG 7 cut(s) 55, 82, 438, 649, 868, 1090, 1194
BtsI GCAGTG 2 cut(s) 1065, 1354
BtsIMutI CAGTG 5 cut(s) 87, 471, 1065, 1185, 1354
Cac8I GCNNGC 4 cut(s) 469, 754, 758, 976
CaiI CAGNNNCTG 1 cut(s) 1246
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 4 cut(s) 522, 995, 1002, 1009
ClaI ATCGAT 1 cut(s) 913
CseI GACGC 1 cut(s) 909
Csp6I GTAC 3 cut(s) 235, 417, 699
CviAII CATG 4 cut(s) 627, 975, 999, 1006
CviQI GTAC 3 cut(s) 235, 417, 699
DdeI CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 998, 1005
Eco147I AGGCCT 1 cut(s) 1049
Eco24I GRGCYC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 1055
Eco47I GGWCC 2 cut(s) 522, 995
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 534
Eco81I CCTNAGG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 998, 1005
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 998, 1005
Esp3I CGTCTC 1 cut(s) 1265
FaeI CATG 4 cut(s) 630, 978, 1002, 1009
FatI CATG 4 cut(s) 626, 974, 998, 1005
FauI CCCGC 3 cut(s) 912, 1115, 1275
FbaI TGATCA 2 cut(s) 679, 718
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 6 cut(s) 606, 666, 1103, 1211, 1214, 1317
FokI GGATG 7 cut(s) 62, 69, 445, 656, 875, 1077, 1181
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 6 cut(s) 606, 666, 1103, 1211, 1214, 1317
FspBI CTAG 5 cut(s) 207, 386, 558, 944, 1328
GluI GCNGC 6 cut(s) 606, 666, 1103, 1211, 1214, 1317
HaeIII GGCC 6 cut(s) 756, 1003, 1010, 1049, 1164, 1210
HapII CCGG 3 cut(s) 68, 318, 662
HgaI GACGC 1 cut(s) 909
Hin1I GRCGYC 2 cut(s) 920, 1258
Hin1II CATG 4 cut(s) 630, 978, 1002, 1009
HinfI GANTC 8 cut(s) 29, 611, 638, 817, 871, 1128, 1243, 1309
HpaII CCGG 3 cut(s) 68, 318, 662
HphI GGTGA 3 cut(s) 805, 1286, 1340
Hpy166II GTNNAC 3 cut(s) 391, 796, 1224
Hpy188I TCNGA 9 cut(s) 637, 643, 672, 847, 1114, 1206, 1242, 1337, 1374
Hpy188III TCNNGA 5 cut(s) 118, 149, 506, 558, 814
Hpy8I GTNNAC 3 cut(s) 391, 796, 1224
Hpy99I CGWCG 3 cut(s) 925, 1125, 1128
HpyAV CCTTC 6 cut(s) 118, 220, 243, 341, 725, 1143
HpyCH4III ACNGT 2 cut(s) 995, 1189
HpyCH4IV ACGT 1 cut(s) 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 665
HpyF3I CTNAG 6 cut(s) 45, 116, 636, 669, 748, 869
HpySE526I ACGT 1 cut(s) 1258
Hsp92I GRCGYC 2 cut(s) 920, 1258
Hsp92II CATG 4 cut(s) 630, 978, 1002, 1009
KpnI GGTACC 1 cut(s) 420
Ksp22I TGATCA 2 cut(s) 679, 718
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 3 cut(s) 617, 652, 1200
LweI GCATC 3 cut(s) 43, 426, 1218
MaeI CTAG 5 cut(s) 207, 386, 558, 944, 1328
MaeII ACGT 1 cut(s) 1258
MaeIII GTNAC 1 cut(s) 289
MbiI CCGCTC 1 cut(s) 1110
MboII GAAGA 8 cut(s) 25, 56, 107, 188, 443, 546, 595, 685
MflI RGATCY 3 cut(s) 193, 1039, 1075
MhlI GDGCHC 4 cut(s) 156, 661, 1194, 1226
MluCI AATT 7 cut(s) 353, 443, 481, 534, 550, 574, 706
MlyI GAGTC 4 cut(s) 647, 880, 1122, 1318
MmeI TCCRAC 2 cut(s) 621, 1360
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 5 cut(s) 36, 374, 711, 767, 839
MspA1I CMGCKG 3 cut(s) 608, 760, 1213
MspI CCGG 3 cut(s) 68, 318, 662
MspR9I CCNGG 2 cut(s) 69, 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 464, 665
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 2 cut(s) 998, 1005
NlaIII CATG 4 cut(s) 630, 978, 1002, 1009
NlaIV GGNNCC 2 cut(s) 418, 524
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 2 cut(s) 630, 978
NspV TTCGAA 1 cut(s) 620
PaeI GCATGC 1 cut(s) 978
PasI CCCWGGG 1 cut(s) 189
PceI AGGCCT 1 cut(s) 1049
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 29, 611, 817, 1243
PkrI GCNGC 6 cut(s) 607, 667, 1104, 1212, 1215, 1318
Ple19I CGATCG 1 cut(s) 917
PleI GAGTC 4 cut(s) 646, 879, 1122, 1317
PpsI GAGTC 4 cut(s) 646, 879, 1122, 1317
Psp124BI GAGCTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 418, 524
PspPI GGNCC 4 cut(s) 522, 995, 1002, 1009
PstNI CAGNNNCTG 1 cut(s) 1246
PsuI RGATCY 3 cut(s) 193, 1039, 1075
PvuI CGATCG 1 cut(s) 917
PvuII CAGCTG 2 cut(s) 608, 760
RsaI GTAC 3 cut(s) 236, 418, 700
RsaNI GTAC 3 cut(s) 235, 417, 699
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 5 cut(s) 36, 374, 711, 767, 839
SatI GCNGC 6 cut(s) 606, 666, 1103, 1211, 1214, 1317
Sau96I GGNCC 4 cut(s) 522, 995, 1002, 1009
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 4 cut(s) 647, 880, 1122, 1318
ScrFI CCNGG 2 cut(s) 69, 190
SduI GDGCHC 4 cut(s) 156, 661, 1194, 1226
SfaNI GCATC 3 cut(s) 43, 426, 1218
SfcI CTRYAG 1 cut(s) 394
SfuI TTCGAA 1 cut(s) 620
SinI GGWCC 2 cut(s) 522, 995
SmlI CTYRAG 2 cut(s) 149, 504
SmoI CTYRAG 2 cut(s) 149, 504
SphI GCATGC 1 cut(s) 978
Sse9I AATT 7 cut(s) 353, 443, 481, 534, 550, 574, 706
SseBI AGGCCT 1 cut(s) 1049
SsiI CCGC 6 cut(s) 905, 1103, 1108, 1211, 1268, 1317
SspMI CTAG 5 cut(s) 207, 386, 558, 944, 1328
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 2 cut(s) 67, 188
StyI CCWWGG 2 cut(s) 998, 1005
TaaI ACNGT 2 cut(s) 995, 1189
TaiI ACGT 1 cut(s) 1261
TaqI TCGA 6 cut(s) 32, 620, 882, 913, 923, 1344
TaqII GACCGA 1 cut(s) 1134
TasI AATT 7 cut(s) 353, 443, 481, 534, 550, 574, 706
TatI WGTACW 1 cut(s) 698
TauI GCSGC 3 cut(s) 1105, 1213, 1319
TfiI GAWTC 4 cut(s) 29, 611, 817, 1243
Tru1I TTAA 5 cut(s) 36, 374, 711, 767, 839
Tru9I TTAA 5 cut(s) 36, 374, 711, 767, 839
TscAI CASTG 5 cut(s) 94, 478, 1072, 1192, 1361
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 605, 665, 1213
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 5 cut(s) 71, 108, 582, 789, 840
TspRI CASTG 5 cut(s) 94, 478, 1072, 1192, 1361
VneI GTGCAC 1 cut(s) 1222
VpaK11BI GGWCC 2 cut(s) 522, 995
XapI RAATTY 3 cut(s) 353, 443, 534
XbaI TCTAGA 1 cut(s) 557
XceI RCATGY 2 cut(s) 630, 978
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 5 cut(s) 207, 386, 558, 944, 1328
ZraI GACGTC 1 cut(s) 1259
ZrmI AGTACT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.