Rmu_sc0006254.1_g000002

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006254.1
OG0002977
Physical Location & Seq
Forward (+)
3250 .. 4063
814 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atgaaccctaattctgctccaattgaacagtttcctaatgttgtcccacccattttcatgcccccaaaagcaaactcaggcatatctgagtcgaacggcatcattaatcctcaatatgactcttctcttgttgattccttatttgatgcactttcttcaccagatttctcgaatatcaacgattctagccacacgagttttttgaaccagcctttgacagaagaacttatcgggactactaagaatattcccactggtgtagcggcctcttttggtttggatgctaaaattgattatattgctaaaggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccggcaagagtctgcctcaaaaagggaagttgttgcaggctctgatggaagccggtccattgcttaagacgcttcttgtcaccgggcctcctctgccccggtggcggaatcctcctactatgcagaccctagaaatcccacccatatcagtcgaaggttgcgaggcaattcttgcaagttttaatgagaaaccagtgataaaggcatgttcttctaaccatctgaattcaatatcttgtcctggattttctcaaacatgttcagctgccatgtggaatttcaacaatgttcctcctatgatatcatgcaaaagttcgaggccgctgaattcgagttcatattttgatcaacaaatccctgctgccaagcaatgtaggcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

246

Amino Acids

26.45

Weight (kDa)

7.56

Isoelectric Point (pI)

54.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 120 - 190 1.8e-20 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 263, 460, 677
AcsI RAATTY 3 cut(s) 580, 631, 682
AfiI CCNNNNNNNGG 3 cut(s) 326, 377, 459
AflII CTTAAG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 611
AgsI TTSAA 5 cut(s) 26, 205, 585, 637, 737
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 1 cut(s) 620
AluI AGCT 1 cut(s) 620
AlwNI CAGNNNCTG 2 cut(s) 346, 397
AoxI GGCC 3 cut(s) 264, 440, 674
ApeKI GCWGC 2 cut(s) 620, 716
ApoI RAATTY 3 cut(s) 580, 631, 682
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 410, 440
AsuC2I CCSGG 2 cut(s) 439, 454
AsuHPI GGTGA 2 cut(s) 150, 427
AvaII GGWCC 1 cut(s) 410
BauI CACGAG 1 cut(s) 193
BbvI GCAGC 2 cut(s) 607, 703
BccI CCATC 3 cut(s) 343, 394, 582
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 597
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 2 cut(s) 439, 454
BfaI CTAG 2 cut(s) 186, 485
BfrI CTTAAG 1 cut(s) 419
BglI GCCNNNNNGGC 1 cut(s) 457
BisI GCNGC 4 cut(s) 264, 621, 677, 717
BlsI GCNGC 4 cut(s) 265, 622, 678, 718
Bme1390I CCNGG 3 cut(s) 439, 454, 597
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 410, 440
BmrFI CCNGG 3 cut(s) 439, 454, 597
BmsI GCATC 3 cut(s) 108, 136, 271
BplI GAGNNNNNCTC 4 cut(s) 304, 336, 355, 387
BpuMI CCSGG 2 cut(s) 439, 454
BsaJI CCNNGG 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 377, 459
Bse118I RCCGGY 2 cut(s) 356, 407
Bse1I ACTGG 2 cut(s) 259, 548
Bse3DI GCAATG 2 cut(s) 413, 731
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 1 cut(s) 452
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 326, 377, 459
BseMI GCAATG 2 cut(s) 413, 731
BseMII CTCAG 2 cut(s) 78, 90
BseNI ACTGG 2 cut(s) 259, 548
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 2 cut(s) 607, 703
BshFI GGCC 3 cut(s) 266, 442, 676
BsiSI CCGG 4 cut(s) 357, 408, 438, 454
BslFI GGGAC 2 cut(s) 29, 247
BslI CCNNNNNNNGG 3 cut(s) 326, 377, 459
BsmFI GGGAC 2 cut(s) 29, 247
BsnI GGCC 3 cut(s) 266, 442, 676
Bsp143I GATC 1 cut(s) 700
BspACI CCGC 3 cut(s) 263, 460, 677
BspANI GGCC 3 cut(s) 266, 442, 676
BspCNI CTCAG 2 cut(s) 79, 89
BspTI CTTAAG 1 cut(s) 419
BsrDI GCAATG 2 cut(s) 413, 731
BsrFI RCCGGY 2 cut(s) 356, 407
BsrI ACTGG 2 cut(s) 259, 548
BssAI RCCGGY 2 cut(s) 356, 407
BssECI CCNNGG 1 cut(s) 452
BssMI GATC 1 cut(s) 700
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 597
Bst4CI ACNGT 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 127
BstAFI CTTAAG 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 342, 358, 393
BstDEI CTNAG 3 cut(s) 76, 87, 240
BstENI CCTNNNNNAGG 2 cut(s) 324, 375
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 703
BstMBI GATC 1 cut(s) 700
BstMWI GCNNNNNNNGC 5 cut(s) 424, 448, 457, 527, 730
BstNI CCWGG 1 cut(s) 597
BstNSI RCATGY 2 cut(s) 564, 615
BstSCI CCNGG 3 cut(s) 437, 452, 595
BstV1I GCAGC 2 cut(s) 607, 703
BsuRI GGCC 3 cut(s) 266, 442, 676
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 252, 555
Cac8I GCNNGC 3 cut(s) 342, 358, 393
CaiI CAGNNNCTG 2 cut(s) 346, 397
Cfr10I RCCGGY 2 cut(s) 356, 407
Cfr13I GGNCC 2 cut(s) 410, 440
CseI GACGC 1 cut(s) 433
CviAII CATG 5 cut(s) 58, 561, 612, 625, 660
DdeI CTNAG 3 cut(s) 76, 87, 240
DpnI GATC 1 cut(s) 702
DpnII GATC 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 475
Eco32I GATATC 1 cut(s) 657
Eco47I GGWCC 1 cut(s) 410
EcoNI CCTNNNNNAGG 2 cut(s) 324, 375
EcoRI GAATTC 2 cut(s) 580, 682
EcoRII CCWGG 1 cut(s) 595
EcoRV GATATC 1 cut(s) 657
FaeI CATG 5 cut(s) 61, 564, 615, 628, 663
FaqI GGGAC 2 cut(s) 29, 247
FatI CATG 5 cut(s) 57, 560, 611, 624, 659
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 4 cut(s) 264, 621, 677, 717
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 4 cut(s) 264, 621, 677, 717
FspBI CTAG 2 cut(s) 186, 485
GluI GCNGC 4 cut(s) 264, 621, 677, 717
HaeIII GGCC 3 cut(s) 266, 442, 676
HapII CCGG 4 cut(s) 357, 408, 438, 454
HgaI GACGC 1 cut(s) 433
Hin1II CATG 5 cut(s) 61, 564, 615, 628, 663
HinfI GANTC 7 cut(s) 89, 119, 134, 182, 313, 364, 463
HpaII CCGG 4 cut(s) 357, 408, 438, 454
HphI GGTGA 2 cut(s) 150, 427
Hpy188I TCNGA 4 cut(s) 88, 348, 399, 579
Hpy188III TCNNGA 2 cut(s) 169, 232
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 1 cut(s) 30
HpyCH4V TGCA 6 cut(s) 149, 340, 391, 478, 530, 663
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 448, 457, 527, 730
HpyF3I CTNAG 3 cut(s) 76, 87, 240
Hsp92II CATG 5 cut(s) 61, 564, 615, 628, 663
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 1 cut(s) 700
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 2 cut(s) 607, 703
LweI GCATC 3 cut(s) 108, 136, 271
MaeI CTAG 2 cut(s) 186, 485
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 702
MboI GATC 1 cut(s) 700
MboII GAAGA 4 cut(s) 114, 147, 233, 558
MfeI CAATTG 1 cut(s) 21
MluCI AATT 7 cut(s) 10, 21, 288, 522, 580, 631, 682
MlyI GAGTC 4 cut(s) 98, 113, 322, 373
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 105, 420, 537
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 2 cut(s) 620, 679
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 4 cut(s) 357, 408, 438, 454
MspR9I CCNGG 3 cut(s) 439, 454, 597
MunI CAATTG 1 cut(s) 21
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 5 cut(s) 424, 448, 457, 527, 730
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 2 cut(s) 439, 454
NdeII GATC 1 cut(s) 700
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 5 cut(s) 61, 564, 615, 628, 663
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 2 cut(s) 564, 615
PciI ACATGT 1 cut(s) 611
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 3 cut(s) 134, 182, 463
PfoI TCCNGGA 1 cut(s) 595
PkrI GCNGC 4 cut(s) 265, 622, 678, 718
PleI GAGTC 4 cut(s) 97, 113, 321, 372
PpsI GAGTC 4 cut(s) 97, 113, 321, 372
PscI ACATGT 1 cut(s) 611
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 595
PspGI CCWGG 1 cut(s) 595
PspPI GGNCC 2 cut(s) 410, 440
PstNI CAGNNNCTG 2 cut(s) 346, 397
PvuII CAGCTG 1 cut(s) 620
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 105, 420, 537
SatI GCNGC 4 cut(s) 264, 621, 677, 717
Sau3AI GATC 1 cut(s) 700
Sau96I GGNCC 2 cut(s) 410, 440
SchI GAGTC 4 cut(s) 98, 113, 322, 373
ScrFI CCNGG 3 cut(s) 439, 454, 597
SetI ASST 2 cut(s) 514, 622
SfaNI GCATC 3 cut(s) 108, 136, 271
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 7 cut(s) 10, 21, 288, 522, 580, 631, 682
SsiI CCGC 3 cut(s) 263, 460, 677
SspI AATATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 186, 485
StyD4I CCNGG 3 cut(s) 437, 452, 595
TaaI ACNGT 1 cut(s) 30
TaqI TCGA 5 cut(s) 92, 170, 507, 671, 686
TasI AATT 7 cut(s) 10, 21, 288, 522, 580, 631, 682
TauI GCSGC 2 cut(s) 266, 679
TfiI GAWTC 3 cut(s) 134, 182, 463
Tru1I TTAA 3 cut(s) 105, 420, 537
Tru9I TTAA 3 cut(s) 105, 420, 537
TscAI CASTG 2 cut(s) 259, 555
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 620, 716
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 3 cut(s) 17, 46, 681
TspRI CASTG 2 cut(s) 259, 555
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 105
XagI CCTNNNNNAGG 2 cut(s) 324, 375
XapI RAATTY 3 cut(s) 580, 631, 682
XceI RCATGY 2 cut(s) 564, 615
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 2 cut(s) 186, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.