Rmu_sc0006862.1_g000004

Ribosomal protein L35

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006862.1
OG0003348
Physical Location & Seq
Forward (+)
13063 .. 16424
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
atgagagcatggattagcgttttagattcctcctctaattccgattcctcctttggttcaggttctggtttgataaatgtgatgtccgacatttgcatatcgataacccggtcgtggatggtggcttcgtcctctggtactcgactccaccaacctccgattcacctcctacttcaacaactccaatggctaggggcccaaaactcgtttaccggctacgaaaccagctctaatgtcgctggccccagtccttcaccagagagagagagagagagagatggcatacatgtcgattcttgggccatgaaagtaccgaaagacctcaggttcgagttcgcgggagcccaacgccagaacgaaaggagtgtacatgaggcgagtcatcttctccagcacgacgctctgacaccggagatgcgaggacataggctgcgtttggcctctctttctttgtcctcgtcaatcaacatcaagattccggattttggcttcaaagaaatagctttctgggtctatgtttctgcttatgaaattgctctggtttgggcatttacagatgtgaatttgagttctcagcttaaattcaagacttttattctaggaacgaaccccactattcaatgctttgatgaacctgagcataagaagaggagaaagccaatgacaccagttacttccaagataaagaaatacaaaatcaagggttactcgtcttacaagtcccggtttaagttattgaatgatggcactattcgacgctggagggagggcaagtggcacaatgcacatctgaagaccactctttttgtgttttctgatacttttcacggtatctctgaacagcagctgcatgtgacaaaatcaaatgatgagcagcaatgtaaggctcagtttgtgaaatcccagctgtgcaatttccataagctttggtgcaccgtgccggaggattcatcccattgtcatggcagagcaaccaccactccaggctcattgaatgtcatccggttcttcactttcccagtaccatcgatagacatcaaaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L35p

Protein Analysis

348

Amino Acids

39.58

Weight (kDa)

9.46

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L35p PF01632 231 - 267 9.8e-06 Ribosomal protein L35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 478
AciI CCGC 1 cut(s) 338
AcsI RAATTY 3 cut(s) 562, 581, 1041
AcuI CTGAAG 1 cut(s) 812
AfaI GTAC 4 cut(s) 139, 312, 369, 1023
AfiI CCNNNNNNNGG 2 cut(s) 114, 485
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 6 cut(s) 176, 493, 586, 620, 739, 994
AjnI CCWGG 1 cut(s) 982
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
AluBI AGCT 6 cut(s) 228, 503, 577, 847, 907, 925
AluI AGCT 6 cut(s) 228, 503, 577, 847, 907, 925
Alw21I GWGCWC 1 cut(s) 935
Alw44I GTGCAC 1 cut(s) 931
AlwNI CAGNNNCTG 2 cut(s) 65, 847
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 4 cut(s) 195, 241, 300, 438
ApaI GGGCCC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 931
ApeKI GCWGC 4 cut(s) 430, 844, 847, 874
ApoI RAATTY 3 cut(s) 562, 581, 1041
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspS9I GGNCC 4 cut(s) 195, 196, 242, 300
AsuC2I CCSGG 2 cut(s) 109, 724
AsuHPI GGTGA 2 cut(s) 155, 246
AxyI CCTNAGG 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 199, 935
BanII GRGCYC 2 cut(s) 199, 346
BbsI GAAGAC 1 cut(s) 800
Bbv12I GWGCWC 1 cut(s) 935
BbvI GCAGC 4 cut(s) 417, 834, 856, 886
BccI CCATC 4 cut(s) 112, 272, 737, 1033
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 1 cut(s) 984
BcnI CCSGG 2 cut(s) 109, 724
BfaI CTAG 2 cut(s) 191, 599
BisI GCNGC 4 cut(s) 431, 845, 848, 875
BlsI GCNGC 4 cut(s) 432, 846, 849, 876
Bme1390I CCNGG 3 cut(s) 109, 724, 984
BmgT120I GGNCC 4 cut(s) 195, 196, 242, 300
BmiI GGNNCC 4 cut(s) 196, 197, 244, 343
BmrFI CCNGG 3 cut(s) 109, 724, 984
BmrI ACTGGG 2 cut(s) 240, 1013
BmsI GCATC 1 cut(s) 405
BmuI ACTGGG 2 cut(s) 240, 1013
BpiI GAAGAC 1 cut(s) 800
BpmI CTGGAG 3 cut(s) 374, 781, 966
Bpu10I CCTNAGC 1 cut(s) 636
BpuMI CCSGG 2 cut(s) 109, 724
Bsa29I ATCGAT 2 cut(s) 101, 1028
BsaBI GATNNNNATC 1 cut(s) 1034
BsaWI WCCGGW 3 cut(s) 409, 478, 1002
BsaXI ACNNNNNCTCC 4 cut(s) 758, 788, 964, 994
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 485
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 3 cut(s) 246, 668, 1019
Bse21I CCTNAGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 884
Bse8I GATNNNNATC 1 cut(s) 1034
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 1 cut(s) 984
BseCI ATCGAT 2 cut(s) 101, 1028
BseGI GGATG 3 cut(s) 123, 950, 999
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 2 cut(s) 114, 485
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 4 cut(s) 337, 587, 627, 902
BseNI ACTGG 3 cut(s) 246, 668, 1019
BseRI GAGGAG 2 cut(s) 22, 664
BseSI GKGCMC 2 cut(s) 199, 935
BseXI GCAGC 4 cut(s) 417, 834, 856, 886
BseYI CCCAGC 1 cut(s) 903
Bsh1236I CGCG 1 cut(s) 338
Bsh1285I CGRYCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 197, 243, 302, 440
BshVI ATCGAT 2 cut(s) 101, 1028
BsiEI CGRYCG 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 935
BsiSI CCGG 7 cut(s) 109, 213, 410, 479, 724, 941, 1003
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 2 cut(s) 114, 485
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 4 cut(s) 197, 243, 302, 440
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 3 cut(s) 199, 346, 935
Bsp13I TCCGGA 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 367
BspACI CCGC 1 cut(s) 338
BspANI GGCC 4 cut(s) 197, 243, 302, 440
BspCNI CTCAG 4 cut(s) 336, 586, 628, 901
BspDI ATCGAT 2 cut(s) 101, 1028
BspEI TCCGGA 1 cut(s) 478
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 4 cut(s) 196, 197, 244, 343
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 3 cut(s) 246, 668, 1019
BssAI RCCGGY 1 cut(s) 212
Bst2UI CCWGG 1 cut(s) 984
Bst4CI ACNGT 2 cut(s) 830, 937
Bst6I CTCTTC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 4 cut(s) 323, 573, 636, 888
BstF5I GGATG 3 cut(s) 123, 950, 999
BstFNI CGCG 1 cut(s) 338
BstMCI CGRYCG 1 cut(s) 113
BstNI CCWGG 1 cut(s) 984
BstNSI RCATGY 2 cut(s) 290, 854
BstSCI CCNGG 3 cut(s) 107, 722, 982
BstSLI GKGCMC 2 cut(s) 199, 935
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 4 cut(s) 417, 834, 856, 886
BstV2I GAAGAC 1 cut(s) 800
BstXI CCANNNNNNTGG 1 cut(s) 962
Bsu15I ATCGAT 2 cut(s) 101, 1028
Bsu36I CCTNAGG 1 cut(s) 323
BsuRI GGCC 4 cut(s) 197, 243, 302, 440
BsuTUI ATCGAT 2 cut(s) 101, 1028
BtsCI GGATG 3 cut(s) 123, 950, 999
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 2 cut(s) 65, 847
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 4 cut(s) 195, 196, 242, 300
ClaI ATCGAT 2 cut(s) 101, 1028
CseI GACGC 2 cut(s) 407, 765
Csp6I GTAC 4 cut(s) 138, 311, 368, 1022
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 6 cut(s) 9, 287, 304, 371, 851, 962
CviQI GTAC 4 cut(s) 138, 311, 368, 1022
DdeI CTNAG 4 cut(s) 323, 573, 636, 888
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco24I GRGCYC 2 cut(s) 199, 346
Eco57I CTGAAG 1 cut(s) 812
Eco81I CCTNAGG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 982
EcoT38I GRGCYC 2 cut(s) 199, 346
FaeI CATG 6 cut(s) 12, 290, 307, 374, 854, 965
FaqI GGGAC 1 cut(s) 706
FatI CATG 6 cut(s) 8, 286, 303, 370, 850, 961
FauI CCCGC 1 cut(s) 331
Fnu4HI GCNGC 4 cut(s) 431, 845, 848, 875
FokI GGATG 3 cut(s) 130, 937, 986
FriOI GRGCYC 2 cut(s) 199, 346
Fsp4HI GCNGC 4 cut(s) 431, 845, 848, 875
FspBI CTAG 2 cut(s) 191, 599
GluI GCNGC 4 cut(s) 431, 845, 848, 875
GsaI CCCAGC 1 cut(s) 907
GsuI CTGGAG 3 cut(s) 374, 781, 966
HaeIII GGCC 4 cut(s) 197, 243, 302, 440
HapII CCGG 7 cut(s) 109, 213, 410, 479, 724, 941, 1003
HgaI GACGC 2 cut(s) 407, 765
Hin1II CATG 6 cut(s) 12, 290, 307, 374, 854, 965
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 8 cut(s) 26, 44, 144, 160, 293, 379, 475, 947
HpaII CCGG 7 cut(s) 109, 213, 410, 479, 724, 941, 1003
HphI GGTGA 2 cut(s) 155, 246
Hpy166II GTNNAC 3 cut(s) 210, 368, 933
Hpy188I TCNGA 7 cut(s) 43, 88, 159, 405, 792, 817, 838
Hpy188III TCNNGA 3 cut(s) 472, 479, 586
Hpy8I GTNNAC 3 cut(s) 210, 368, 933
Hpy99I CGWCG 2 cut(s) 401, 759
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 2 cut(s) 830, 937
HpyCH4V TGCA 5 cut(s) 96, 785, 850, 912, 933
HpyF3I CTNAG 4 cut(s) 323, 573, 636, 888
Hsp92II CATG 6 cut(s) 12, 290, 307, 374, 854, 965
Kpn2I TCCGGA 1 cut(s) 478
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 4 cut(s) 417, 834, 856, 886
LweI GCATC 1 cut(s) 405
MaeI CTAG 2 cut(s) 191, 599
MaeIII GTNAC 3 cut(s) 670, 704, 853
MboII GAAGA 4 cut(s) 377, 658, 805, 1000
MhlI GDGCHC 3 cut(s) 199, 346, 935
MluCI AATT 6 cut(s) 37, 531, 562, 581, 913, 1041
MlyI GAGTC 2 cut(s) 138, 388
MmeI TCCRAC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 478
MseI TTAA 2 cut(s) 579, 729
MslI CAYNNNNRTG 1 cut(s) 960
MspA1I CMGCKG 2 cut(s) 847, 907
MspI CCGG 7 cut(s) 109, 213, 410, 479, 724, 941, 1003
MspR9I CCNGG 3 cut(s) 109, 724, 984
MvaI CCWGG 1 cut(s) 984
MvnI CGCG 1 cut(s) 338
NciI CCSGG 2 cut(s) 109, 724
NlaIII CATG 6 cut(s) 12, 290, 307, 374, 854, 965
NlaIV GGNNCC 4 cut(s) 196, 197, 244, 343
NmuCI GTSAC 1 cut(s) 853
NspI RCATGY 2 cut(s) 290, 854
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 6 cut(s) 26, 44, 160, 293, 475, 947
PkrI GCNGC 4 cut(s) 432, 846, 849, 876
PleI GAGTC 2 cut(s) 138, 387
PpsI GAGTC 2 cut(s) 138, 387
PscI ACATGT 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 982
PspFI CCCAGC 1 cut(s) 903
PspGI CCWGG 1 cut(s) 982
PspN4I GGNNCC 4 cut(s) 196, 197, 244, 343
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 4 cut(s) 195, 196, 242, 300
PstNI CAGNNNCTG 2 cut(s) 65, 847
PvuII CAGCTG 2 cut(s) 847, 907
RsaI GTAC 4 cut(s) 139, 312, 369, 1023
RsaNI GTAC 4 cut(s) 138, 311, 368, 1022
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 2 cut(s) 579, 729
SatI GCNGC 4 cut(s) 431, 845, 848, 875
Sau96I GGNCC 4 cut(s) 195, 196, 242, 300
SchI GAGTC 2 cut(s) 138, 388
ScrFI CCNGG 3 cut(s) 109, 724, 984
SduI GDGCHC 3 cut(s) 199, 346, 935
SfaNI GCATC 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 960
Sse9I AATT 6 cut(s) 37, 531, 562, 581, 913, 1041
SsiI CCGC 1 cut(s) 338
SspMI CTAG 2 cut(s) 191, 599
StyD4I CCNGG 3 cut(s) 107, 722, 982
TaaI ACNGT 2 cut(s) 830, 937
TaqI TCGA 6 cut(s) 101, 142, 291, 330, 754, 1028
TasI AATT 6 cut(s) 37, 531, 562, 581, 913, 1041
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 6 cut(s) 26, 44, 160, 293, 475, 947
Tru1I TTAA 2 cut(s) 579, 729
Tru9I TTAA 2 cut(s) 579, 729
TseFI GTSAC 1 cut(s) 853
TseI GCWGC 4 cut(s) 430, 844, 847, 874
Tsp45I GTSAC 1 cut(s) 853
TspDTI ATGAA 4 cut(s) 320, 543, 645, 939
VneI GTGCAC 1 cut(s) 931
XapI RAATTY 3 cut(s) 562, 581, 1041
XceI RCATGY 2 cut(s) 290, 854
XspI CTAG 2 cut(s) 191, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.