Rmu_sc0007085.1_g000005

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007085.1
OG0002514
Physical Location & Seq
Forward (+)
15692 .. 16556
865 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
atgaacaagactatagacgaagatcattataaggttcttggtttgccgtccggcgaggaaggctctaagctcacagagaaacagattacgaaggcttaccacgcaaaagctttggtgttgcaccctgacaagaggcctaaaagtgatctccaagccaataccaacttccaaaggctcaaaaaatcctatgaggttctcaagaatgaaagttcccgcaaagtgttcgaccaaatgcttagagatcaaagacagaaagatgggaaccattcggagcacgatcccaagcgacagaagatggtttctgatcttgaagcaagagaacgagctgcaaagtttgacagggatgccaaaaagagagagcctgggggagttgggaagaacgtgaatggtggtgttgggataagcctgaggttagaagaagagaaggtgattagagtgtgttgggaaaagtttgagggttgtttggctttggttctgatggagactagagatgcagctgttgccgcaacaggagaggtaattggtgatctttctaatccgttgagggtttcgctttttcaaccggtcgcaccgaagaggatggtggctccgacagctgagaagtctgatgaacctgatcaagttaataatttggttggggttggctttcgaacatttgaagatggaccttttaaagaaggttgcacaggctgggcagaagcaaaaacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

236

Amino Acids

26.42

Weight (kDa)

8.63

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 8 - 76 1.5e-15 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AciI CCGC 2 cut(s) 214, 504
AclWI GGATC 1 cut(s) 272
AgeI ACCGGT 1 cut(s) 562
AgsI TTSAA 3 cut(s) 311, 560, 659
AjnI CCWGG 1 cut(s) 361
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 5 cut(s) 70, 110, 326, 497, 596
AluI AGCT 5 cut(s) 70, 110, 326, 497, 596
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 326, 494
AsiGI ACCGGT 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 2 cut(s) 439, 536
AsuII TTCGAA 1 cut(s) 649
AvaII GGWCC 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 313, 506
BccI CCATC 5 cut(s) 251, 289, 472, 574, 656
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 363
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 327, 495, 504
BlsI GCNGC 3 cut(s) 328, 496, 505
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 665
BmiI GGNNCC 2 cut(s) 263, 588
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 2 cut(s) 334, 481
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu14I TTCGAA 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 362
BsaWI WCCGGW 1 cut(s) 562
Bse118I RCCGGY 1 cut(s) 562
Bse21I CCTNAGG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 2 cut(s) 349, 585
BseMII CTCAG 2 cut(s) 398, 588
BseXI GCAGC 2 cut(s) 313, 506
BseYI CCCAGC 1 cut(s) 690
Bsh1285I CGRYCG 1 cut(s) 567
BshFI GGCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 562
BsiEI CGRYCG 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 51, 563
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 649
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
BspACI CCGC 2 cut(s) 214, 504
BspANI GGCC 1 cut(s) 136
BspCNI CTCAG 2 cut(s) 399, 589
BspLI GGNNCC 2 cut(s) 263, 588
BspPI GGATC 1 cut(s) 272
BspT104I TTCGAA 1 cut(s) 649
BsrFI RCCGGY 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
Bst2UI CCWGG 1 cut(s) 363
Bst6I CTCTTC 2 cut(s) 414, 569
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBI TTCGAA 1 cut(s) 649
BstDEI CTNAG 4 cut(s) 66, 236, 407, 597
BstF5I GGATG 2 cut(s) 349, 585
BstKTI GATC 7 cut(s) 25, 148, 244, 280, 307, 529, 619
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
BstMCI CGRYCG 1 cut(s) 567
BstMWI GCNNNNNNNGC 5 cut(s) 60, 101, 500, 503, 593
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 313, 506
Bsu36I CCTNAGG 1 cut(s) 407
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 349, 585
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 665
CspAI ACCGGT 1 cut(s) 562
DdeI CTNAG 4 cut(s) 66, 236, 407, 597
DpnI GATC 7 cut(s) 24, 147, 243, 279, 306, 528, 618
DpnII GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
DraI TTTAAA 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 414, 569
EarI CTCTTC 2 cut(s) 414, 569
Eco147I AGGCCT 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 665
Eco81I CCTNAGG 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 361
FaiI YATR 3 cut(s) 14, 30, 189
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 3 cut(s) 327, 495, 504
FokI GGATG 2 cut(s) 356, 592
Fsp4HI GCNGC 3 cut(s) 327, 495, 504
FspBI CTAG 1 cut(s) 486
GluI GCNGC 3 cut(s) 327, 495, 504
GsaI CCCAGC 1 cut(s) 694
HaeIII GGCC 1 cut(s) 136
HapII CCGG 2 cut(s) 51, 563
HindIII AAGCTT 1 cut(s) 108
HpaII CCGG 2 cut(s) 51, 563
HphI GGTGA 2 cut(s) 439, 536
Hpy188I TCNGA 5 cut(s) 271, 304, 477, 591, 607
Hpy188III TCNNGA 2 cut(s) 199, 308
HpyAV CCTTC 4 cut(s) 53, 85, 418, 671
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 121, 329, 494, 684
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 101, 500, 503, 593
HpyF3I CTNAG 4 cut(s) 66, 236, 407, 597
HpySE526I ACGT 1 cut(s) 381
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
LmnI GCTCC 2 cut(s) 271, 592
Lsp1109I GCAGC 2 cut(s) 313, 506
LweI GCATC 2 cut(s) 334, 481
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 381
MalI GATC 7 cut(s) 24, 147, 243, 279, 306, 528, 618
MboI GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
MboII GAAGA 7 cut(s) 32, 304, 388, 428, 431, 586, 671
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 519, 628
MmeI TCCRAC 1 cut(s) 614
MnlI CCTC 8 cut(s) 49, 126, 184, 402, 448, 508, 537, 570
MseI TTAA 2 cut(s) 624, 672
MspA1I CMGCKG 2 cut(s) 497, 596
MspI CCGG 2 cut(s) 51, 563
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 5 cut(s) 60, 101, 500, 503, 593
NdeII GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
NlaIV GGNNCC 2 cut(s) 263, 588
NspV TTCGAA 1 cut(s) 649
PceI AGGCCT 1 cut(s) 136
PinAI ACCGGT 1 cut(s) 562
PkrI GCNGC 3 cut(s) 328, 496, 505
PsiI TTATAA 1 cut(s) 30
Psp6I CCWGG 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 690
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 263, 588
PspPI GGNCC 1 cut(s) 665
PvuII CAGCTG 2 cut(s) 497, 596
SaqAI TTAA 2 cut(s) 624, 672
SatI GCNGC 3 cut(s) 327, 495, 504
Sau3AI GATC 7 cut(s) 22, 145, 241, 277, 304, 526, 616
Sau96I GGNCC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 276
SfaNI GCATC 2 cut(s) 334, 481
SfcI CTRYAG 1 cut(s) 12
SfuI TTCGAA 1 cut(s) 649
SinI GGWCC 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 519, 628
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 2 cut(s) 214, 504
SspMI CTAG 1 cut(s) 486
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 361
TaiI ACGT 1 cut(s) 384
TaqI TCGA 2 cut(s) 225, 649
TasI AATT 2 cut(s) 519, 628
TauI GCSGC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 624, 672
Tru9I TTAA 2 cut(s) 624, 672
TseI GCWGC 2 cut(s) 326, 494
TspDTI ATGAA 3 cut(s) 17, 219, 624
TspGWI ACGGA 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 665
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.