Rmu_ssc0000472.1_g000009

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000472.1
OG0002977
Physical Location & Seq
Forward (+)
55620 .. 57603
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 969 bp
atgggttctatatggactacctatcaagagagcactgatgatttgaacaagaagcttctttacactacccttgagcttgaaacaatgaagaatttagcaacagagagtcaagagaatgtgaagaatctactcaatctactaaaggttgcatacaaagaaagagatgaagccagagaccagctgcacaagttcttcaacaagatcactgcttctactccaattgacttacccaatgtgcagtttaatcaagtagtccagcccgaaagtccgactttgatgcccacaaaagcaaactcaagcattactgaatccaacagcctctctgaaacttacaatccccaatcacatatctcttctcctgttgattcattgtttgatgcagtctcttcccctgagtttaccaatatcaacatggctgattctagcaacaacatgggttttgtgaagcagcctttggtgaaagaatttaatggaagtactattatacctactggtgtagtagtctcttctggttcaagtatcaaagctgatcctgctgatgaaataattgacaattttgttaggggtaggcctttgcctcagaaaggaatgttattgcaagctgtgatggatgctggtccattgcttcagacacttctcgttgcaggtcctatgccccggtggcgaaatccccctcctttgcagcccttcaaaatcccaccagtttcaatcaaaggttgtgaagctgctgtgagttttaacaaccagaaaccagtggcaagtcatacctatgtggttcataagacacagaacgcaacatcttatcctgagatgactcgaggcttttctcaaacatgttcagctgccatgttgaatttcaacaatgtcaatcctaatgctgtttcatacctaaacaattcaagaatgccgagttcaatttccagttttgatcaccaaatcccaattgccaagcggcataggcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

322

Amino Acids

35.58

Weight (kDa)

7.02

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 10 - 256 1.8e-44 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 635
AciI CCGC 1 cut(s) 952
AclWI GGATC 1 cut(s) 524
AcsI RAATTY 3 cut(s) 91, 464, 853
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 833
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 7 cut(s) 55, 76, 181, 527, 602, 725, 842
AluI AGCT 7 cut(s) 55, 76, 181, 527, 602, 725, 842
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 3 cut(s) 168, 388, 508
AlwI GGATC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 816
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 5 cut(s) 181, 448, 682, 725, 842
ApoI RAATTY 3 cut(s) 91, 464, 853
AspS9I GGNCC 2 cut(s) 617, 647
AsuC2I CCSGG 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 469, 923
AvaI CYCGRG 1 cut(s) 816
AvaII GGWCC 2 cut(s) 617, 647
BarI GAAGNNNNNNTAC 2 cut(s) 44, 76
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 5 cut(s) 168, 460, 694, 712, 829
BccI CCATC 1 cut(s) 601
BcgI CGANNNNNNTGC 2 cut(s) 259, 293
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 658
BcoDI GTCTC 3 cut(s) 168, 388, 508
BfaI CTAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 635
BglI GCCNNNNNGGC 1 cut(s) 661
BisI GCNGC 6 cut(s) 182, 449, 683, 726, 843, 953
BlsI GCNGC 6 cut(s) 183, 450, 684, 727, 844, 954
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 1 cut(s) 658
Bme18I GGWCC 2 cut(s) 617, 647
BmeT110I CYCGRG 1 cut(s) 816
BmgT120I GGNCC 2 cut(s) 617, 647
BmrFI CCNGG 1 cut(s) 658
BmsI GCATC 3 cut(s) 267, 367, 601
BpuEI CTTGAG 2 cut(s) 92, 280
BpuMI CCSGG 1 cut(s) 658
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 656
Bsc4I CCNNNNNNNGG 1 cut(s) 584
Bse1I ACTGG 4 cut(s) 496, 701, 752, 921
Bse3DI GCAATG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 656
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 384, 593, 798
BseNI ACTGG 4 cut(s) 496, 701, 752, 921
BseXI GCAGC 5 cut(s) 168, 460, 694, 712, 829
BsgI GTGCAG 2 cut(s) 167, 257
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 816
BsiSI CCGG 1 cut(s) 658
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 3 cut(s) 168, 388, 508
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 1 cut(s) 571
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 816
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 201, 529, 928
BspACI CCGC 1 cut(s) 952
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 3 cut(s) 385, 592, 799
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 4 cut(s) 496, 701, 752, 921
BssECI CCNNGG 1 cut(s) 656
BssMI GATC 3 cut(s) 201, 529, 928
Bst6I CTCTTC 3 cut(s) 358, 391, 511
BstC8I GCNNGC 1 cut(s) 600
BstDEI CTNAG 3 cut(s) 393, 579, 807
BstENI CCTNNNNNAGG 1 cut(s) 582
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 3 cut(s) 204, 532, 931
BstMAI GTCTC 3 cut(s) 168, 388, 508
BstMBI GATC 3 cut(s) 201, 529, 928
BstMWI GCNNNNNNNGC 3 cut(s) 533, 661, 958
BstNSI RCATGY 1 cut(s) 837
BstSCI CCNGG 1 cut(s) 656
BstV1I GCAGC 5 cut(s) 168, 460, 694, 712, 829
BsuRI GGCC 1 cut(s) 571
BtsCI GGATG 1 cut(s) 616
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 3 cut(s) 33, 204, 759
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 1 cut(s) 600
Cfr13I GGNCC 2 cut(s) 617, 647
Csp6I GTAC 1 cut(s) 477
CviAII CATG 4 cut(s) 412, 433, 834, 847
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 3 cut(s) 393, 579, 807
DpnI GATC 3 cut(s) 203, 531, 930
DpnII GATC 3 cut(s) 201, 529, 928
Eam1104I CTCTTC 3 cut(s) 358, 391, 511
EarI CTCTTC 3 cut(s) 358, 391, 511
Eco147I AGGCCT 1 cut(s) 571
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 617, 647
Eco57I CTGAAG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 816
EcoNI CCTNNNNNAGG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 647
FaeI CATG 4 cut(s) 415, 436, 837, 850
FalI AAGNNNNNCTT 2 cut(s) 256, 288
FatI CATG 4 cut(s) 411, 432, 833, 846
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 6 cut(s) 182, 449, 683, 726, 843, 953
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 6 cut(s) 182, 449, 683, 726, 843, 953
FspBI CTAG 1 cut(s) 423
GluI GCNGC 6 cut(s) 182, 449, 683, 726, 843, 953
HaeIII GGCC 1 cut(s) 571
HapII CCGG 1 cut(s) 658
Hin1II CATG 4 cut(s) 415, 436, 837, 850
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 6 cut(s) 106, 124, 308, 365, 419, 814
HpaII CCGG 1 cut(s) 658
HphI GGTGA 2 cut(s) 469, 923
Hpy166II GTNNAC 1 cut(s) 399
Hpy188I TCNGA 4 cut(s) 270, 325, 582, 630
Hpy188III TCNNGA 4 cut(s) 26, 110, 806, 900
Hpy8I GTNNAC 1 cut(s) 399
HpyAV CCTTC 1 cut(s) 697
HpyCH4V TGCA 7 cut(s) 149, 184, 238, 380, 598, 644, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 533, 661, 958
HpyF3I CTNAG 3 cut(s) 393, 579, 807
Hsp92II CATG 4 cut(s) 415, 436, 837, 850
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 3 cut(s) 201, 529, 928
Lsp1109I GCAGC 5 cut(s) 168, 460, 694, 712, 829
LweI GCATC 3 cut(s) 267, 367, 601
MaeI CTAG 1 cut(s) 423
MalI GATC 3 cut(s) 203, 531, 930
MboI GATC 3 cut(s) 201, 529, 928
MboII GAAGA 6 cut(s) 100, 133, 184, 345, 378, 498
MfeI CAATTG 2 cut(s) 219, 942
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 9 cut(s) 91, 219, 464, 546, 553, 853, 895, 915, 942
MlyI GAGTC 2 cut(s) 115, 808
MmeI TCCRAC 2 cut(s) 293, 336
MnlI CCTC 4 cut(s) 329, 588, 684, 812
MseI TTAA 3 cut(s) 243, 468, 738
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 2 cut(s) 181, 842
MspI CCGG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 658
MunI CAATTG 2 cut(s) 219, 942
Mva1269I GAATGC 1 cut(s) 909
MwoI GCNNNNNNNGC 3 cut(s) 533, 661, 958
NciI CCSGG 1 cut(s) 658
NdeII GATC 3 cut(s) 201, 529, 928
NlaIII CATG 4 cut(s) 415, 436, 837, 850
NmeAIII GCCGAG 1 cut(s) 933
NspI RCATGY 1 cut(s) 837
PaeR7I CTCGAG 1 cut(s) 816
PceI AGGCCT 1 cut(s) 571
PciI ACATGT 1 cut(s) 833
PctI GAATGC 1 cut(s) 909
PfeI GAWTC 4 cut(s) 124, 308, 365, 419
PkrI GCNGC 6 cut(s) 183, 450, 684, 727, 844, 954
PleI GAGTC 2 cut(s) 114, 808
PpsI GAGTC 2 cut(s) 114, 808
PpuMI RGGWCCY 1 cut(s) 647
PscI ACATGT 1 cut(s) 833
Psp5II RGGWCCY 1 cut(s) 647
PspPI GGNCC 2 cut(s) 617, 647
PspPPI RGGWCCY 1 cut(s) 647
PspXI VCTCGAGB 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 181, 842
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 1 cut(s) 768
SaqAI TTAA 3 cut(s) 243, 468, 738
SatI GCNGC 6 cut(s) 182, 449, 683, 726, 843, 953
Sau3AI GATC 3 cut(s) 201, 529, 928
Sau96I GGNCC 2 cut(s) 617, 647
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 2 cut(s) 115, 808
ScrFI CCNGG 1 cut(s) 658
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 267, 367, 601
Sfr274I CTCGAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 617, 647
SlaI CTCGAG 1 cut(s) 816
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 3 cut(s) 71, 295, 816
SmoI CTYRAG 3 cut(s) 71, 295, 816
Sse9I AATT 9 cut(s) 91, 219, 464, 546, 553, 853, 895, 915, 942
SseBI AGGCCT 1 cut(s) 571
SsiI CCGC 1 cut(s) 952
SspMI CTAG 1 cut(s) 423
StuI AGGCCT 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 656
TaqI TCGA 1 cut(s) 817
TasI AATT 9 cut(s) 91, 219, 464, 546, 553, 853, 895, 915, 942
TatI WGTACW 1 cut(s) 476
TauI GCSGC 1 cut(s) 955
TfiI GAWTC 4 cut(s) 124, 308, 365, 419
Tru1I TTAA 3 cut(s) 243, 468, 738
Tru9I TTAA 3 cut(s) 243, 468, 738
TscAI CASTG 3 cut(s) 40, 211, 759
TseI GCWGC 5 cut(s) 181, 448, 682, 725, 842
TspDTI ATGAA 6 cut(s) 101, 180, 357, 555, 767, 873
TspRI CASTG 3 cut(s) 40, 211, 759
VpaK11BI GGWCC 2 cut(s) 617, 647
XagI CCTNNNNNAGG 1 cut(s) 582
XapI RAATTY 3 cut(s) 91, 464, 853
XceI RCATGY 1 cut(s) 837
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 816
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.