Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

18686158 .. 18693600

Gene Structure 7443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00097480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGGATAGCAGCCTATCTGAGCCTTTATTAGCCAAAACTAAATTAGACCAAGCCAGCTTCCTTAGCAAACTGACATTTTCTTGGGTCAATCCTCTCCTTAAGTTGGGTTCCTCGAGAGCATTAGATCTCGAAGACATCCCTTCTCTGGTTTCTGAAGACGAAGCAAATGTAGCATACCAGAAGTTTTCTGATGCATTGGAGTCCCTTTCAAGGGAGAAGAGCTCAAGTAGTACGTCGAGGAACTTGGTTCTCAGAGCCATGGCAAGAGTTTACATGAAGGAAAATGTGTTGATAATCATTTGTGCATTCCTCAAGACCATTGCTGTTCTAGTTTCCCCTCTTATACTCTATGCTTTTGTAAACTACTCAAATAGTGACAATGAAAGTCTCTCTGAAGGCCTCATTATAGTGGGGTATCCAGTTCTTACCAAACTGAAGCTTTCTAGTTTGGGAAGGAGAAGGCACTCAGCTGGAGAGATTGTGAATTACATAGCAGTGGACGCTTATCGAATGGGGGAGTTCCTATGGTGGTTTCATTCGACATGGAGCCTTTCGTTGCAACTATTGCTTTCCATTGTTGTACTTAATGTGGTCGTGGGTGTTGGTGCTCTACCTGGTTTAGTTCCTCTTATCATTTTTGGTCTTCTGAATGTGCCATTTGCCAAGGTACTTCAGAAGTGTCAGTCTGAGTTCATGGTAGCTCAGGATGAAAGGCTTAGAGCCACCTCTGAGATCCTACACAGCATGAAAATCATTAAGTTACGATCATGGGAAGAGAAATTCAAAACCTCGGTTGATGCCCTTCGCGAAAGAGAGTTCAAACCATTCGCTGAGGCACAATTTCAAAAGGCTTATGGAACTATCACGAAAGTCCCATCACAGAATTCAGATGAGAGCTTAAAAATAGAAAGTGGCACGTTCAGCTGGGATCCTGAACTAACAACGATCCCAACTCTGAGAGATGTGAATTTGGAAGTAAAATGGGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGCATGCTTTACTTGGAGAGATGCCAAAAATGTCAGGAATAATCGATATTACTAGCTTTGATCATGGTGATCTTACAGAAATAGGGCAGAGGGGACTTAACATGAGTGGAGGACAGAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAATGATGCCGATATCTATCTCCTTGATGACCCCTTTAGTGCAGTGGATGCAAATACAGCTGCAATTCTATTTCATGATAGTGTCATGTCTGCTCTTGCAAAGAAAACTGTAATTCTGGTGACTCATCAAGTTGAATTTCTCTCACAAGTTGACAAGATTTTGGTAATTGAGCATGGACAAATTACTCAATCCGGAAGCTACGAGAGTCTCTTGACAGCAGGAACTGCATTTGCGAAGCTTGTGAATGCTCACAAAGATGCAGTAACAACATTGGGTCCTTCAAACTATCAAGTTCAAGAAGATTCTGAAAAGGAAGATATGATCCAGCCAGAGGAGTCTTATGGGAGCACAATAGCGCAGATTGGTTTTCTTGGTCTTCAGGTTGCTTCAACTTACTGGCTAGCTCTAGCCATTCAAATTCCTAAAATAACTAGCGGCATACTCATCGGAGTTTATACTGCAGTATCAACACTTGGTGTTGTCTTTGTATTTCTAAGGTCATACTTCGCAGCCCTTATGGGATTGAAGGCGTCTAGAGCATTTTTCTGTAGTTTCATAGATGCTATCTTCAAGGCTCCCAGGCTCTTTGACTCAACTCTCGTCGGACGAATTTTGACACGAGCTTCATCAGATTTAAGTATATTGGATCTTGACATACCTTTCGCTAAAATCTTTCTGGTGGCTTCTGGTACTGAACTGCTGACAGTGATTGGAATTATGGCTTCAATCACATGGGAAGTTCTCATTGTAGCCATCCTCGCCATTATTGCTGCACAATATGTTCAGAGTTACTATCTAGCCTCTGCAAGGGAGCTGATAAGAATAAATGGAACAACAAAAGCTCCCGTAATAAATTATACAGCTGAGACATCACTTGGAGTGGTCTCTATAAGAGCTTTTACAATGGTTGACAGGACAGAAGCACTTCAAAATGTGACCCTTTTCACCGCTGCTTTTCTCCTTATTCTACTTCCCAAGGGTTATGTTTCTCCAGGATTTGTGGGGCTTTCTCTTTCTTATGCTTTGACATTAACGGGGACGCAAATTTATCAGACTCCATGGTATTGCAATTTATCAAACTACATTATCTCAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCTGAGCCTCCGGAAATTGTGGAGGACAATAGGCCACCTTCTTCATGGCCTATGAAGGAGCCAAGCAGTGGTAAAATTATTATAGATGGACTTGACATCTGCTCTATTGGTCTAAAAGATTTGAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAGGGGTAGCATTCGAACCAACTTGGATCCTCTAGGCCTATACTCTGACGATGAAATATGGAGGCGCCAGCTGTTTTGCCTTGGAAGAGTGCTTCTCAAGAGGAACAGGATTCTAGTTCTAGATGAGGCTACTGCTTCCATTGATTCTATAACAGATGCCATTCTACAAAGAATCATCAGGCTAGAATTTGCAGAATGCACAGTGATAACTGTGGCTCATAGAGTTCCAACAGGGCACATTGTTGGCACAATGATAATGAGGAAAAGCAAAATGCTTAAGTTGTCTATTGGATACGTAGCTGACTCTTTGAAACGTGACTGTCGTGTGTTTTACAGAGAAGCTGTTCAAACCAATACAAGCGTCCCAAGGACAAGGTTCTCAATATCTGGTGCAGCAGGCCAAAAACAGCCACCTTCAATTCCCGAGATGGGTTCTACTTCTCAAGACCGAAAAAGGAAGCGCTTTGCAATAGATGGAGAGGAGGAAACATTCAGTTTGCAGAATCGGTTGATTGAGGTCATGGAAAGGAATGGTAAAATGCTGGCTGACTATTTTGAGGCTCGAATTCTCATTCGCAACTGGATAGGGAGCGAGAGGAAAGAACATTCGATAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1030

Amino Acids

114.31

Weight (kDa)

7.18

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	154 - 275	1.5e-14	ABC transporter transmembrane region
ABC_tran	PF00005	319 - 363	3.4e-06	ABC transporter
ABC_tran	PF00005	371 - 407	5e-07	ABC transporter
ABC_membrane	PF00664	540 - 701	9.8e-10	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2538
AccB7I	CCANNNNNTGG	1 cut(s)	2378
AccII	CGCG	1 cut(s)	807
AccIII	TCCGGA	2 cut(s)	1376, 2320
AciI	CCGC	2 cut(s)	1620, 2133
AclWI	GGATC	8 cut(s)	727, 923, 936, 940, 1501, 1839, 2495, 2508
AcsI	RAATTY	9 cut(s)	779, 883, 967, 1319, 1602, 1794, 2229, 2660, 3039
AcuI	CTGAAG	5 cut(s)	174, 414, 455, 656, 1547
AcyI	GRCGYC	2 cut(s)	1715, 2539
AdeI	CACNNNGTG	1 cut(s)	1661
AfaI	GTAC	4 cut(s)	232, 582, 669, 1876
AfeI	AGCGCT	1 cut(s)	2936
AfiI	CCNNNNNNNGG	8 cut(s)	103, 145, 210, 211, 1516, 1992, 2378, 2903
AflII	CTTAAG	2 cut(s)	98, 2750
AjnI	CCWGG	3 cut(s)	613, 1763, 2176
Alw21I	GWGCWC	3 cut(s)	224, 610, 1535
Alw26I	GTCTC	4 cut(s)	392, 1397, 2045, 2074
AlwI	GGATC	8 cut(s)	727, 923, 936, 940, 1501, 1839, 2495, 2508
AlwNI	CAGNNNCTG	1 cut(s)	1409
Ama87I	CYCGRG	3 cut(s)	112, 1173, 2897
Aor13HI	TCCGGA	2 cut(s)	1376, 2320
Aor51HI	AGCGCT	1 cut(s)	2936
AoxI	GGCC	6 cut(s)	397, 1170, 2342, 2357, 2509, 2872
ApeKI	GCWGC	6 cut(s)	9, 1244, 1694, 1955, 2135, 2867
ApoI	RAATTY	9 cut(s)	779, 883, 967, 1319, 1602, 1794, 2229, 2660, 3039
ArsI	GACNNNNNNTTYG	2 cut(s)	1829, 1861
Asp700I	GAANNNNTTC	2 cut(s)	2109, 2817
AspLEI	GCGC	3 cut(s)	1543, 2541, 2937
AspS9I	GGNCC	3 cut(s)	1007, 1171, 1460
AsuHPI	GGTGA	4 cut(s)	1115, 1315, 2122, 2301
AsuII	TTCGAA	1 cut(s)	2488
AsuNHI	GCTAGC	1 cut(s)	1585
AvaI	CYCGRG	3 cut(s)	112, 1173, 2897
AvaII	GGWCC	2 cut(s)	1007, 1460
BaeGI	GKGCMC	1 cut(s)	2712
BaeI	ACNNNNGTAYC	2 cut(s)	1632, 1665
BamHI	GGATCC	2 cut(s)	928, 2500
BanI	GGYRCC	1 cut(s)	2538
BanII	GRGCYC	1 cut(s)	224
BauI	CACGAG	1 cut(s)	1803
BbsI	GAAGAC	4 cut(s)	138, 162, 635, 1553
Bbv12I	GWGCWC	3 cut(s)	224, 610, 1535
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	6 cut(s)	21, 1231, 1706, 1942, 2122, 2879
BccI	CCATC	5 cut(s)	883, 1946, 2390, 2896, 2942
BcgI	CGANNNNNNTGC	2 cut(s)	1612, 1646
BciT130I	CCWGG	3 cut(s)	615, 1765, 2178
BciVI	GTATCC	2 cut(s)	426, 2759
BclI	TGATCA	1 cut(s)	1096
BcoDI	GTCTC	4 cut(s)	392, 1397, 2045, 2074
BfmI	CTRYAG	2 cut(s)	1644, 1732
BfoI	RGCGCY	2 cut(s)	2542, 2938
BfrI	CTTAAG	2 cut(s)	98, 2750
BfuI	GTATCC	2 cut(s)	426, 2759
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	7 cut(s)	10, 1245, 1621, 1695, 1956, 2136, 2868
BlpI	GCTNAGC	1 cut(s)	2444
BlsI	GCNGC	7 cut(s)	11, 1246, 1622, 1696, 1957, 2137, 2869
Bme1390I	CCNGG	3 cut(s)	615, 1765, 2178
Bme18I	GGWCC	2 cut(s)	1007, 1460
BmeT110I	CYCGRG	3 cut(s)	112, 1173, 2897
BmgT120I	GGNCC	3 cut(s)	1007, 1171, 1460
BmiI	GGNNCC	8 cut(s)	109, 548, 930, 1461, 1761, 2370, 2502, 2540
BmrFI	CCNGG	3 cut(s)	615, 1765, 2178
BmsI	GCATC	9 cut(s)	181, 787, 1047, 1180, 1222, 1432, 1735, 2457, 2620
BmtI	GCTAGC	1 cut(s)	1589
BpiI	GAAGAC	4 cut(s)	138, 162, 635, 1553
BplI	GAGNNNNNCTC	4 cut(s)	206, 238, 2553, 2585
BpmI	CTGGAG	2 cut(s)	492, 2160
Bpu10I	CCTNAGC	4 cut(s)	62, 702, 831, 2313
Bpu1102I	GCTNAGC	1 cut(s)	2444
Bpu14I	TTCGAA	1 cut(s)	2488
BpuEI	CTTGAG	5 cut(s)	208, 296, 2442, 2555, 2901
Bsa29I	ATCGAT	1 cut(s)	1080
BsaAI	YACGTR	1 cut(s)	2770
BsaBI	GATNNNNATC	1 cut(s)	1200
BsaHI	GRCGYC	2 cut(s)	1715, 2539
BsaI	GGTCTC	1 cut(s)	2074
BsaJI	CCNNGG	8 cut(s)	258, 663, 789, 1763, 2160, 2243, 2554, 2840
BsaWI	WCCGGW	2 cut(s)	1376, 2320
BsaXI	ACNNNNNCTCC	4 cut(s)	465, 495, 2011, 2041
Bsc4I	CCNNNNNNNGG	8 cut(s)	103, 145, 210, 211, 1516, 1992, 2378, 2903
Bse1I	ACTGG	4 cut(s)	419, 1010, 1586, 3059
Bse3DI	GCAATG	1 cut(s)	318
Bse8I	GATNNNNATC	1 cut(s)	1200
BseAI	TCCGGA	2 cut(s)	1376, 2320
BseBI	CCWGG	3 cut(s)	615, 1765, 2178
BseCI	ATCGAT	1 cut(s)	1080
BseDI	CCNNGG	8 cut(s)	258, 663, 789, 1763, 2160, 2243, 2554, 2840
BseGI	GGATG	5 cut(s)	135, 712, 1237, 1938, 2451
BseJI	GATNNNNATC	1 cut(s)	1200
BseLI	CCNNNNNNNGG	8 cut(s)	103, 145, 210, 211, 1516, 1992, 2378, 2903
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	4 cut(s)	419, 1010, 1586, 3059
BseRI	GAGGAG	2 cut(s)	1532, 2969
BseSI	GKGCMC	1 cut(s)	2712
BseXI	GCAGC	6 cut(s)	21, 1231, 1706, 1942, 2122, 2879
BseYI	CCCAGC	1 cut(s)	924
BsgI	GTGCAG	3 cut(s)	1245, 1941, 2886
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	6 cut(s)	399, 1172, 2344, 2359, 2511, 2874
BshNI	GGYRCC	1 cut(s)	2538
BshVI	ATCGAT	1 cut(s)	1080
BsiHKAI	GWGCWC	3 cut(s)	224, 610, 1535
BsiHKCI	CYCGRG	3 cut(s)	112, 1173, 2897
BsiSI	CCGG	2 cut(s)	1377, 2321
BslFI	GGGAC	5 cut(s)	187, 857, 1143, 2236, 2822
BslI	CCNNNNNNNGG	8 cut(s)	103, 145, 210, 211, 1516, 1992, 2378, 2903
BsmAI	GTCTC	4 cut(s)	392, 1397, 2045, 2074
BsmFI	GGGAC	5 cut(s)	187, 857, 1143, 2236, 2822
BsmI	GAATGC	4 cut(s)	305, 1435, 2484, 2675
BsnI	GGCC	6 cut(s)	399, 1172, 2344, 2359, 2511, 2874
Bso31I	GGTCTC	1 cut(s)	2074
BsoBI	CYCGRG	3 cut(s)	112, 1173, 2897
Bsp119I	TTCGAA	1 cut(s)	2488
Bsp1286I	GDGCHC	4 cut(s)	224, 610, 1535, 2712
Bsp13I	TCCGGA	2 cut(s)	1376, 2320
Bsp1720I	GCTNAGC	1 cut(s)	2444
Bsp19I	CCATGG	2 cut(s)	258, 2243
Bsp68I	TCGCGA	1 cut(s)	807
BspACI	CCGC	2 cut(s)	1620, 2133
BspANI	GGCC	6 cut(s)	399, 1172, 2344, 2359, 2511, 2874
BspDI	ATCGAT	1 cut(s)	1080
BspEI	TCCGGA	2 cut(s)	1376, 2320
BspFNI	CGCG	1 cut(s)	807
BspHI	TCATGA	1 cut(s)	1258
BspLI	GGNNCC	8 cut(s)	109, 548, 930, 1461, 1761, 2370, 2502, 2540
BspMAI	CTGCAG	1 cut(s)	1648
BspOI	GCTAGC	1 cut(s)	1589
BspPI	GGATC	8 cut(s)	727, 923, 936, 940, 1501, 1839, 2495, 2508
BspQI	GCTCTTC	1 cut(s)	212
BspT104I	TTCGAA	1 cut(s)	2488
BspT107I	GGYRCC	1 cut(s)	2538
BspTI	CTTAAG	2 cut(s)	98, 2750
BspTNI	GGTCTC	1 cut(s)	2074
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	4 cut(s)	419, 1010, 1586, 3059
BssECI	CCNNGG	8 cut(s)	258, 663, 789, 1763, 2160, 2243, 2554, 2840
BssNI	GRCGYC	2 cut(s)	1715, 2539
BssSI	CACGAG	1 cut(s)	1803
BssT1I	CCWWGG	6 cut(s)	258, 663, 2160, 2243, 2554, 2840
Bst2BI	CACGAG	1 cut(s)	1803
Bst2UI	CCWGG	3 cut(s)	615, 1765, 2178
Bst4CI	ACNGT	5 cut(s)	1294, 1891, 2677, 2686, 2795
Bst6I	CTCTTC	3 cut(s)	212, 768, 2554
BstACI	GRCGYC	2 cut(s)	1715, 2539
BstAFI	CTTAAG	2 cut(s)	98, 2750
BstAPI	GCANNNNNTGC	3 cut(s)	565, 1232, 1409
BstBAI	YACGTR	1 cut(s)	2770
BstBI	TTCGAA	1 cut(s)	2488
BstC8I	GCNNGC	7 cut(s)	55, 1041, 1170, 1587, 2543, 2872, 3018
BstDSI	CCRYGG	2 cut(s)	258, 2243
BstENI	CCTNNNNNAGG	1 cut(s)	1990
BstF5I	GGATG	5 cut(s)	135, 712, 1237, 1938, 2451
BstFNI	CGCG	1 cut(s)	807
BstH2I	RGCGCY	2 cut(s)	2542, 2938
BstHHI	GCGC	3 cut(s)	1543, 2541, 2937
BstMAI	GTCTC	4 cut(s)	392, 1397, 2045, 2074
BstNI	CCWGG	3 cut(s)	615, 1765, 2178
BstNSI	RCATGY	1 cut(s)	1043
BstSCI	CCNGG	3 cut(s)	613, 1763, 2176
BstSFI	CTRYAG	2 cut(s)	1644, 1732
BstSLI	GKGCMC	1 cut(s)	2712
BstSNI	TACGTA	1 cut(s)	2770
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	6 cut(s)	21, 1231, 1706, 1942, 2122, 2879
BstV2I	GAAGAC	4 cut(s)	138, 162, 635, 1553
BstX2I	RGATCY	5 cut(s)	124, 732, 928, 1831, 2500
BstYI	RGATCY	5 cut(s)	124, 732, 928, 1831, 2500
Bsu15I	ATCGAT	1 cut(s)	1080
BsuI	GTATCC	2 cut(s)	426, 2759
BsuRI	GGCC	6 cut(s)	399, 1172, 2344, 2359, 2511, 2874
BsuTUI	ATCGAT	1 cut(s)	1080
BtgI	CCRYGG	2 cut(s)	258, 2243
BtsCI	GGATG	5 cut(s)	135, 712, 1237, 1938, 2451
BtsI	GCAGTG	3 cut(s)	501, 1233, 2383
BtsIMutI	CAGTG	5 cut(s)	501, 1233, 1896, 2383, 2682
BtuMI	TCGCGA	1 cut(s)	807
Cac8I	GCNNGC	7 cut(s)	55, 1041, 1170, 1587, 2543, 2872, 3018
CaiI	CAGNNNCTG	1 cut(s)	1409
CciI	TCATGA	1 cut(s)	1258
CfoI	GCGC	3 cut(s)	1543, 2541, 2937
Cfr13I	GGNCC	3 cut(s)	1007, 1171, 1460
ClaI	ATCGAT	1 cut(s)	1080
CseI	GACGC	4 cut(s)	509, 1704, 2233, 2824
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	4 cut(s)	231, 581, 668, 1875
CviQI	GTAC	4 cut(s)	231, 581, 668, 1875
DinI	GGCGCC	1 cut(s)	2540
DraIII	CACNNNGTG	1 cut(s)	1661
Eam1104I	CTCTTC	3 cut(s)	212, 768, 2554
EarI	CTCTTC	3 cut(s)	212, 768, 2554
Ecl136II	GAGCTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	2770
Eco130I	CCWWGG	6 cut(s)	258, 663, 2160, 2243, 2554, 2840
Eco147I	AGGCCT	2 cut(s)	399, 2511
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	1 cut(s)	2074
Eco32I	GATATC	1 cut(s)	1198
Eco47I	GGWCC	2 cut(s)	1007, 1460
Eco47III	AGCGCT	1 cut(s)	2936
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	5 cut(s)	174, 414, 455, 656, 1547
Eco88I	CYCGRG	3 cut(s)	112, 1173, 2897
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	1990
EcoO109I	RGGNCCY	1 cut(s)	1460
EcoRI	GAATTC	2 cut(s)	883, 3039
EcoRII	CCWGG	3 cut(s)	613, 1763, 2176
EcoRV	GATATC	1 cut(s)	1198
EcoT14I	CCWWGG	6 cut(s)	258, 663, 2160, 2243, 2554, 2840
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	2540
EheI	GGCGCC	1 cut(s)	2540
ErhI	CCWWGG	6 cut(s)	258, 663, 2160, 2243, 2554, 2840
FaqI	GGGAC	5 cut(s)	187, 857, 1143, 2236, 2822
FbaI	TGATCA	1 cut(s)	1096
Fnu4HI	GCNGC	7 cut(s)	10, 1245, 1621, 1695, 1956, 2136, 2868
FokI	GGATG	5 cut(s)	122, 719, 1244, 1925, 2438
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	7 cut(s)	10, 1245, 1621, 1695, 1956, 2136, 2868
GlaI	GCGC	3 cut(s)	1542, 2540, 2936
GluI	GCNGC	7 cut(s)	10, 1245, 1621, 1695, 1956, 2136, 2868
GsaI	CCCAGC	1 cut(s)	928
GsuI	CTGGAG	2 cut(s)	492, 2160
HaeII	RGCGCY	2 cut(s)	2542, 2938
HaeIII	GGCC	6 cut(s)	399, 1172, 2344, 2359, 2511, 2874
HapII	CCGG	2 cut(s)	1377, 2321
HgaI	GACGC	4 cut(s)	509, 1704, 2233, 2824
HhaI	GCGC	3 cut(s)	1543, 2541, 2937
Hin1I	GRCGYC	2 cut(s)	1715, 2539
Hin6I	GCGC	3 cut(s)	1541, 2539, 2935
HinP1I	GCGC	3 cut(s)	1541, 2539, 2935
HincII	GTYRAC	2 cut(s)	1336, 2095
HindII	GTYRAC	2 cut(s)	1336, 2095
HindIII	AAGCTT	2 cut(s)	437, 1421
HpaII	CCGG	2 cut(s)	1377, 2321
HphI	GGTGA	4 cut(s)	1115, 1315, 2122, 2301
Hpy166II	GTNNAC	6 cut(s)	271, 361, 499, 1007, 1336, 2095
Hpy8I	GTNNAC	6 cut(s)	271, 361, 499, 1007, 1336, 2095
Hpy99I	CGWCG	2 cut(s)	238, 1790
HpyCH4III	ACNGT	5 cut(s)	1294, 1891, 2677, 2686, 2795
HpyCH4IV	ACGT	4 cut(s)	233, 917, 2769, 2788
HpySE526I	ACGT	4 cut(s)	233, 917, 2769, 2788
Hsp92I	GRCGYC	2 cut(s)	1715, 2539
HspAI	GCGC	3 cut(s)	1541, 2539, 2935
KasI	GGCGCC	1 cut(s)	2538
Kpn2I	TCCGGA	2 cut(s)	1376, 2320
Ksp22I	TGATCA	1 cut(s)	1096
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	8 cut(s)	546, 985, 1530, 1765, 1996, 2032, 2368, 3063
Lsp1109I	GCAGC	6 cut(s)	21, 1231, 1706, 1942, 2122, 2879
LweI	GCATC	9 cut(s)	181, 787, 1047, 1180, 1222, 1432, 1735, 2457, 2620
MabI	ACCWGGT	1 cut(s)	613
MaeII	ACGT	4 cut(s)	233, 917, 2769, 2788
MaeIII	GTNAC	7 cut(s)	374, 759, 1303, 1447, 1973, 2119, 2789
MflI	RGATCY	5 cut(s)	124, 732, 928, 1831, 2500
MhlI	GDGCHC	4 cut(s)	224, 610, 1535, 2712
Mly113I	GGCGCC	1 cut(s)	2539
MlyI	GAGTC	7 cut(s)	209, 1300, 1399, 1529, 1769, 2233, 2771
MmeI	TCCRAC	2 cut(s)	1768, 2726
Mph1103I	ATGCAT	1 cut(s)	196
MroI	TCCGGA	2 cut(s)	1376, 2320
MroXI	GAANNNNTTC	2 cut(s)	2109, 2817
MseI	TTAA	9 cut(s)	99, 585, 756, 899, 1134, 1820, 2216, 2751, 3091
MslI	CAYNNNNRTG	4 cut(s)	407, 494, 1263, 1440
MspA1I	CMGCKG	7 cut(s)	470, 924, 1168, 1244, 2048, 2135, 2545
MspCI	CTTAAG	2 cut(s)	98, 2750
MspI	CCGG	2 cut(s)	1377, 2321
MspR9I	CCNGG	3 cut(s)	615, 1765, 2178
Mva1269I	GAATGC	4 cut(s)	305, 1435, 2484, 2675
MvaI	CCWGG	3 cut(s)	615, 1765, 2178
MvnI	CGCG	1 cut(s)	807
NarI	GGCGCC	1 cut(s)	2539
NcoI	CCATGG	2 cut(s)	258, 2243
NheI	GCTAGC	1 cut(s)	1585
NlaIV	GGNNCC	8 cut(s)	109, 548, 930, 1461, 1761, 2370, 2502, 2540
NmuCI	GTSAC	4 cut(s)	374, 1303, 2119, 2789
NruI	TCGCGA	1 cut(s)	807
NsiI	ATGCAT	1 cut(s)	196
NspI	RCATGY	1 cut(s)	1043
NspV	TTCGAA	1 cut(s)	2488
PaeI	GCATGC	1 cut(s)	1043
PaeR7I	CTCGAG	1 cut(s)	112
PagI	TCATGA	1 cut(s)	1258
PceI	AGGCCT	2 cut(s)	399, 2511
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	2794
PctI	GAATGC	4 cut(s)	305, 1435, 2484, 2675
PdmI	GAANNNNTTC	2 cut(s)	2109, 2817
PfeI	GAWTC	6 cut(s)	1162, 1487, 2584, 2618, 2646, 2977
PflMI	CCANNNNNTGG	1 cut(s)	2378
PfoI	TCCNGGA	1 cut(s)	2176
PkrI	GCNGC	7 cut(s)	11, 1246, 1622, 1696, 1957, 2137, 2869
PleI	GAGTC	7 cut(s)	208, 1300, 1398, 1528, 1769, 2233, 2771
PluTI	GGCGCC	1 cut(s)	2542
PpsI	GAGTC	7 cut(s)	208, 1300, 1398, 1528, 1769, 2233, 2771
Ppu21I	YACGTR	1 cut(s)	2770
PpuMI	RGGWCCY	1 cut(s)	1460
Psp124BI	GAGCTC	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	1460
Psp6I	CCWGG	3 cut(s)	613, 1763, 2176
PspFI	CCCAGC	1 cut(s)	924
PspGI	CCWGG	3 cut(s)	613, 1763, 2176
PspN4I	GGNNCC	8 cut(s)	109, 548, 930, 1461, 1761, 2370, 2502, 2540
PspPI	GGNCC	3 cut(s)	1007, 1171, 1460
PspPPI	RGGWCCY	1 cut(s)	1460
PstI	CTGCAG	1 cut(s)	1648
PstNI	CAGNNNCTG	1 cut(s)	1409
PsuI	RGATCY	5 cut(s)	124, 732, 928, 1831, 2500
PvuII	CAGCTG	6 cut(s)	470, 924, 1168, 1244, 2048, 2545
RruI	TCGCGA	1 cut(s)	807
RsaI	GTAC	4 cut(s)	232, 582, 669, 1876
RsaNI	GTAC	4 cut(s)	231, 581, 668, 1875
RseI	CAYNNNNRTG	4 cut(s)	407, 494, 1263, 1440
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	9 cut(s)	99, 585, 756, 899, 1134, 1820, 2216, 2751, 3091
SatI	GCNGC	7 cut(s)	10, 1245, 1621, 1695, 1956, 2136, 2868
Sau96I	GGNCC	3 cut(s)	1007, 1171, 1460
SchI	GAGTC	7 cut(s)	209, 1300, 1399, 1529, 1769, 2233, 2771
ScrFI	CCNGG	3 cut(s)	615, 1765, 2178
SduI	GDGCHC	4 cut(s)	224, 610, 1535, 2712
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	9 cut(s)	181, 787, 1047, 1180, 1222, 1432, 1735, 2457, 2620
SfcI	CTRYAG	2 cut(s)	1644, 1732
SfoI	GGCGCC	1 cut(s)	2540
Sfr274I	CTCGAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	2488
SinI	GGWCC	2 cut(s)	1007, 1460
SlaI	CTCGAG	1 cut(s)	112
SmiMI	CAYNNNNRTG	4 cut(s)	407, 494, 1263, 1440
SmlI	CTYRAG	8 cut(s)	98, 112, 223, 311, 2457, 2570, 2750, 2916
SmoI	CTYRAG	8 cut(s)	98, 112, 223, 311, 2457, 2570, 2750, 2916
SnaBI	TACGTA	1 cut(s)	2770
SphI	GCATGC	1 cut(s)	1043
SseBI	AGGCCT	2 cut(s)	399, 2511
SsiI	CCGC	2 cut(s)	1620, 2133
SspDI	GGCGCC	1 cut(s)	2538
SstI	GAGCTC	1 cut(s)	224
StuI	AGGCCT	2 cut(s)	399, 2511
StyD4I	CCNGG	3 cut(s)	613, 1763, 2176
StyI	CCWWGG	6 cut(s)	258, 663, 2160, 2243, 2554, 2840
TaaI	ACNGT	5 cut(s)	1294, 1891, 2677, 2686, 2795
TaiI	ACGT	4 cut(s)	236, 920, 2772, 2791
TaqII	GACCGA	1 cut(s)	2937
TatI	WGTACW	1 cut(s)	580
TauI	GCSGC	1 cut(s)	1623
TfiI	GAWTC	6 cut(s)	1162, 1487, 2584, 2618, 2646, 2977
Tru1I	TTAA	9 cut(s)	99, 585, 756, 899, 1134, 1820, 2216, 2751, 3091
Tru9I	TTAA	9 cut(s)	99, 585, 756, 899, 1134, 1820, 2216, 2751, 3091
TscAI	CASTG	5 cut(s)	501, 1233, 1896, 2383, 2682
TseFI	GTSAC	4 cut(s)	374, 1303, 2119, 2789
TseI	GCWGC	6 cut(s)	9, 1244, 1694, 1955, 2135, 2867
Tsp45I	GTSAC	4 cut(s)	374, 1303, 2119, 2789
TspRI	CASTG	5 cut(s)	501, 1233, 1896, 2383, 2682
Van91I	CCANNNNNTGG	1 cut(s)	2378
Vha464I	CTTAAG	2 cut(s)	98, 2750
VpaK11BI	GGWCC	2 cut(s)	1007, 1460
XagI	CCTNNNNNAGG	1 cut(s)	1990
XapI	RAATTY	9 cut(s)	779, 883, 967, 1319, 1602, 1794, 2229, 2660, 3039
XbaI	TCTAGA	2 cut(s)	1718, 2593
XceI	RCATGY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2352
XhoI	CTCGAG	1 cut(s)	112
XmnI	GAANNNNTTC	2 cut(s)	2109, 2817
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.