Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Forward (+)

62665358 .. 62671837

Gene Structure 6480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG463300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGATAGCAGCCTATCTGAGCCTTTATTAGCCAAAACTAAATTAGACCAAGCCAGCTTCCTTAGCAAACTGACATTTTCTTGGGTCAATCCTCTCCTTAAGTTGGGTTCCTCGAGAGCATTAGATCTCGAAGACATCCCTTCTCTGGTTTCTGAAGACGAAGCAAATGTAGCATACCAGAAGTTTTCTAATGCATTGGAGTCCCTCTCGAGGGAGAAGAGCTCAAGTAGTACGTCGAGGAACTTGGTTCTCAGAGCCATGGCAAGAGTTTACATGAAGGAAAATGTGTTGATAATCATTTGTGCATTCCTCAAGACCATTGCTGTTGTAGTTTCTCCTCTTACACTCTATGCTTTTGTAAACTATTCAAATAATGACAAGGAAAGTCTCTCTGAAGGCCTCATTATAGTGGGGTATCTAGTTCTTACCAAAGTACTTCAGAAGTGTCAGTCTGAGTTCATGGTAACTCAGGATGAAAGGCTTAGAGCCACCTCTGAGATCCTAAACAGCATGAAAATCATTAAGTTACAATCATGGGAAGAGAAATTCAAAAACTCGGTTGATGCCCTTCGTGAAAGAGAGTTCAAACCATTGGCTGAGGCACAATTTCAAAAGGCTTATGGAACTGTCATGTATTGGATGGCACCAACCATCATCTCTTCGGTTGTTTTTCTAGGATGCATTGTTTTCAACAGTGCTCCTCTAAATGCAAGATGCATTGTTTTCAACAGTGCTCCTCTAAATGCAAGTACTATATTCACAGTTCTAGCATCATTGAAAAGCATGGGGGAACCTGTCAGGTTTATACCGGAAGCACTTTCAGTTATGATACAAGTCAAGGTCTCGTTTGATAGGCTGAATTTTTTTCTGCTTGATAATGAGCTAAAGGATAGTGAAATAAGGAAAGTCCCATCACAGAATTCAGACGAGAGCTTAAAAATAGAAAGTGGCACGTTCAGCTGGGATCCTGAACTAACAACGATCCCAACTCTGAGAGATGTGAATTTGGAAGTAAAATGGGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGCATGCTTTACTTGGAGAGATGCCAAAAATGTCAGGAATGGATTGTGTCATGTCTGCTCTTGCAAAGAAAACTGTAATTCTGGTGACTCATCAAGTTGAATTTCTCTCACAAGTTGACAAGATTTTGGTAATTGAGGATGGACAAATTACTCAATCCGGAAGCTACGAGAGTCTCTTGACAGCAGGAACTGCATTTGTGAAGCTTGTGAATGCTCACAAAGATGCAGTAACAACATTGGGTCCTTCAAACTATCAAGTTCAAGAAGATTCTGAAAAGGAAGATATGATCCAGCCAGAGGAGTCTTATGGGAGTAACCCTAGTGTACCTGGGGTGCAGCCAACAGAAGAAGAAGAGAAGGTGATTGGTGATGTGGGGTTGAAGCCCTTTTGGGATTGCATTTTTGTTTCTAAGGCAACACTTCTTCTTTGCTTAGGCACAATAGCGCAGATTGGTTTTCTTGATCTTCAGGTTGCTTCAACTTACTGGCTAGCTCTAGCCATTCAAATTCCTAAAATAACTAGCGGCATACTCATCGGAGTTTATACTGCAGTAGCAACACTTGGTGTTGTCTTTGTATTTCTAAGGTCATACTTCGCAGCCCTTATGGGATTGAAGGCGTCTAGAGCATTTTTCTGTAGTTTCATAGATGCTATCTTCAAGGCTCCCATGCTCTTCTTTGACTCAACTCCCGTCGGACGAATTTTGACACGAGCTTCATCAGATTTAAGTATATTGGATCTTGACATACCTTTCGCTACAATCTTTCTGGTGGCTTCTGGTACTGAACTGCTGACAGTGATTGGAATTATGGCTTCTGTCACATGGGAAGTTCTCATTGTAGCCATTCTTGCCATTATTGCTGCACAATATGTTCAGCTAGCCTCTGCAAGGGAGCTGATGAGAATAAATGGAACAAAAAAAGCTCCCGTAATAAATTATACAGCTGAGACATCACTTGGAGCGGTCTCTATAAGAGCTTTTACAATGGTGTACAGGTTCTTCCACAACTTCCTAAAGCTAGTTGACACAGATGCAAGTCTCTCCTTTCACTCCAATGCAACCATGGAGTGGTTAATTTTGAGGACAGAAGCACTTCAAAATGTGACCCTTTTCACCGCTGCTTTTCTCCTTATTCTACTTCCCAAGGGTTATGTTTCTCCAGGACTTGTGGGGCTTTCTCTTTCTTATGCTTTGACATTAACGGGGACGCAAATTTATCAGACTCGATGGTATTGCAATTTATCAAGCTACATTATCTCAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCTGAGCCTCCGGAAATTGTGGAGGACAATAGGCCACCTTCTTCACGGCCTATGAAGGGTAGGATAGAGCTGTATTCTCTGAATATCAAATATCGTCAGAACGCTCCACTCGTTCTCAAGGGAATCACATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGTGGCAAAACTACACTCATAAGTGCTTTGTTTCGTTTAGTAGAGCCAAGCAGTGGTAAAATTATTATAGATGGACTTGACATCTGCTCTATTGGTCTAAAAGATTTGAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAGGGGTAGCATTCGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

904

Amino Acids

99.77

Weight (kDa)

6.62

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	134 - 232	1.3e-06	ABC transporter transmembrane region
ABC_tran	PF00005	331 - 397	8.8e-06	ABC transporter
ABC_membrane	PF00664	532 - 761	7.5e-21	ABC transporter transmembrane region
ABC_tran	PF00005	828 - 900	1.3e-13	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccB7I	CCANNNNNTGG	2 cut(s)	2142, 2597
AccBSI	CCGCTC	1 cut(s)	2036
AccIII	TCCGGA	2 cut(s)	1229, 2377
AciI	CCGC	3 cut(s)	1596, 2036, 2190
AclWI	GGATC	6 cut(s)	493, 959, 972, 976, 1354, 1818
AcsI	RAATTY	8 cut(s)	545, 859, 919, 1003, 1172, 1578, 1773, 2286
AcuI	CTGAAG	4 cut(s)	174, 414, 422, 1523
AcyI	GRCGYC	1 cut(s)	1691
AdeI	CACNNNGTG	1 cut(s)	1637
AfaI	GTAC	6 cut(s)	232, 435, 751, 1398, 1855, 2066
AfiI	CCNNNNNNNGG	9 cut(s)	103, 145, 210, 211, 1369, 1962, 2142, 2423, 2597
AflII	CTTAAG	1 cut(s)	98
AjnI	CCWGG	2 cut(s)	1399, 2233
Alw21I	GWGCWC	3 cut(s)	224, 700, 736
Alw26I	GTCTC	6 cut(s)	392, 847, 1250, 2015, 2044, 2117
AlwI	GGATC	6 cut(s)	493, 959, 972, 976, 1354, 1818
AlwNI	CAGNNNCTG	1 cut(s)	1262
Ama87I	CYCGRG	2 cut(s)	112, 208
Aor13HI	TCCGGA	2 cut(s)	1229, 2377
AoxI	GGCC	3 cut(s)	397, 2399, 2414
ApeKI	GCWGC	5 cut(s)	9, 1408, 1670, 1934, 2192
ApoI	RAATTY	8 cut(s)	545, 859, 919, 1003, 1172, 1578, 1773, 2286
ArsI	GACNNNNNNTTYG	2 cut(s)	1808, 1840
Asp700I	GAANNNNTTC	1 cut(s)	2166
AspLEI	GCGC	1 cut(s)	1519
AspS9I	GGNCC	2 cut(s)	1043, 1313
AsuHPI	GGTGA	5 cut(s)	1168, 1444, 1451, 2179, 2358
AsuII	TTCGAA	1 cut(s)	2707
AsuNHI	GCTAGC	2 cut(s)	1561, 1951
AvaI	CYCGRG	2 cut(s)	112, 208
AvaII	GGWCC	2 cut(s)	1043, 1313
BamHI	GGATCC	1 cut(s)	964
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	224
BarI	GAAGNNNNNNTAC	2 cut(s)	2057, 2089
BauI	CACGAG	1 cut(s)	1782
BbsI	GAAGAC	2 cut(s)	138, 162
Bbv12I	GWGCWC	3 cut(s)	224, 700, 736
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	5 cut(s)	21, 1420, 1682, 1921, 2179
BccI	CCATC	6 cut(s)	634, 659, 919, 1205, 2295, 2609
BceAI	ACGGC	1 cut(s)	2429
BcgI	CGANNNNNNTGC	4 cut(s)	1588, 1622, 2289, 2323
BciT130I	CCWGG	2 cut(s)	1401, 2235
BcoDI	GTCTC	6 cut(s)	392, 847, 1250, 2015, 2044, 2117
BfmI	CTRYAG	2 cut(s)	1620, 1708
BfrI	CTTAAG	1 cut(s)	98
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	6 cut(s)	10, 1409, 1597, 1671, 1935, 2193
BlpI	GCTNAGC	1 cut(s)	2663
BlsI	GCNGC	6 cut(s)	11, 1410, 1598, 1672, 1936, 2194
BmcAI	AGTACT	2 cut(s)	435, 751
Bme1390I	CCNGG	2 cut(s)	1401, 2235
Bme18I	GGWCC	2 cut(s)	1043, 1313
BmeT110I	CYCGRG	2 cut(s)	112, 208
BmgT120I	GGNCC	2 cut(s)	1043, 1313
BmiI	GGNNCC	6 cut(s)	109, 645, 792, 966, 1314, 1737
BmrFI	CCNGG	2 cut(s)	1401, 2235
BmsI	GCATC	9 cut(s)	553, 668, 704, 779, 1083, 1285, 1711, 2095, 2676
BmtI	GCTAGC	2 cut(s)	1565, 1955
BpiI	GAAGAC	2 cut(s)	138, 162
BplI	GAGNNNNNCTC	4 cut(s)	191, 223, 206, 238
BpmI	CTGGAG	1 cut(s)	2217
Bpu10I	CCTNAGC	4 cut(s)	62, 597, 1504, 2370
Bpu1102I	GCTNAGC	1 cut(s)	2663
Bpu14I	TTCGAA	1 cut(s)	2707
BpuEI	CTTGAG	4 cut(s)	208, 296, 2468, 2661
BsaHI	GRCGYC	1 cut(s)	1691
BsaI	GGTCTC	2 cut(s)	847, 2044
BsaJI	CCNNGG	4 cut(s)	258, 1400, 2136, 2217
BsaWI	WCCGGW	3 cut(s)	808, 1229, 2377
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 145, 210, 211, 1369, 1962, 2142, 2423, 2597
Bse1I	ACTGG	2 cut(s)	1046, 1562
Bse3DI	GCAATG	1 cut(s)	318
BseAI	TCCGGA	2 cut(s)	1229, 2377
BseBI	CCWGG	2 cut(s)	1401, 2235
BseDI	CCNNGG	4 cut(s)	258, 1400, 2136, 2217
BseGI	GGATG	6 cut(s)	135, 478, 645, 683, 1216, 2670
BseLI	CCNNNNNNNGG	9 cut(s)	103, 145, 210, 211, 1369, 1962, 2142, 2423, 2597
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	1046, 1562
BseRI	GAGGAG	4 cut(s)	327, 690, 726, 1385
BseXI	GCAGC	5 cut(s)	21, 1420, 1682, 1921, 2179
BseYI	CCCAGC	1 cut(s)	960
BsgI	GTGCAG	2 cut(s)	1427, 1920
BshFI	GGCC	3 cut(s)	399, 2401, 2416
BshNI	GGYRCC	1 cut(s)	643
BsiHKAI	GWGCWC	3 cut(s)	224, 700, 736
BsiHKCI	CYCGRG	2 cut(s)	112, 208
BsiSI	CCGG	3 cut(s)	809, 1230, 2378
BslFI	GGGAC	4 cut(s)	187, 893, 2293, 2527
BslI	CCNNNNNNNGG	9 cut(s)	103, 145, 210, 211, 1369, 1962, 2142, 2423, 2597
BsmAI	GTCTC	6 cut(s)	392, 847, 1250, 2015, 2044, 2117
BsmFI	GGGAC	4 cut(s)	187, 893, 2293, 2527
BsmI	GAATGC	3 cut(s)	305, 1288, 2703
BsnI	GGCC	3 cut(s)	399, 2401, 2416
Bso31I	GGTCTC	2 cut(s)	847, 2044
BsoBI	CYCGRG	2 cut(s)	112, 208
Bsp119I	TTCGAA	1 cut(s)	2707
Bsp1286I	GDGCHC	3 cut(s)	224, 700, 736
Bsp13I	TCCGGA	2 cut(s)	1229, 2377
Bsp1407I	TGTACA	1 cut(s)	2064
Bsp143I	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
Bsp1720I	GCTNAGC	1 cut(s)	2663
Bsp19I	CCATGG	2 cut(s)	258, 2136
BspACI	CCGC	3 cut(s)	1596, 2036, 2190
BspANI	GGCC	3 cut(s)	399, 2401, 2416
BspEI	TCCGGA	2 cut(s)	1229, 2377
BspLI	GGNNCC	6 cut(s)	109, 645, 792, 966, 1314, 1737
BspMAI	CTGCAG	1 cut(s)	1624
BspOI	GCTAGC	2 cut(s)	1565, 1955
BspPI	GGATC	6 cut(s)	493, 959, 972, 976, 1354, 1818
BspQI	GCTCTTC	2 cut(s)	212, 1751
BspT104I	TTCGAA	1 cut(s)	2707
BspT107I	GGYRCC	1 cut(s)	643
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	2 cut(s)	847, 2044
BsrBI	CCGCTC	1 cut(s)	2036
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	2064
BsrI	ACTGG	2 cut(s)	1046, 1562
BssECI	CCNNGG	4 cut(s)	258, 1400, 2136, 2217
BssMI	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
BssNI	GRCGYC	1 cut(s)	1691
BssSI	CACGAG	1 cut(s)	1782
BssT1I	CCWWGG	3 cut(s)	258, 2136, 2217
Bst2BI	CACGAG	1 cut(s)	1782
Bst2UI	CCWGG	2 cut(s)	1401, 2235
Bst4CI	ACNGT	6 cut(s)	628, 695, 731, 763, 1147, 1870
Bst6I	CTCTTC	5 cut(s)	212, 534, 664, 1419, 1751
BstACI	GRCGYC	1 cut(s)	1691
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstAUI	TGTACA	1 cut(s)	2064
BstBI	TTCGAA	1 cut(s)	2707
BstC8I	GCNNGC	4 cut(s)	55, 1077, 1563, 1953
BstDSI	CCRYGG	2 cut(s)	258, 2136
BstENI	CCTNNNNNAGG	1 cut(s)	1960
BstF5I	GGATG	6 cut(s)	135, 478, 645, 683, 1216, 2670
BstHHI	GCGC	1 cut(s)	1519
BstKTI	GATC	7 cut(s)	127, 501, 967, 984, 1362, 1537, 1813
BstMAI	GTCTC	6 cut(s)	392, 847, 1250, 2015, 2044, 2117
BstMBI	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 170, 957, 1262, 1697, 1922, 1931
BstNI	CCWGG	2 cut(s)	1401, 2235
BstNSI	RCATGY	2 cut(s)	1079, 2499
BstSCI	CCNGG	2 cut(s)	1399, 2233
BstSFI	CTRYAG	2 cut(s)	1620, 1708
BstV1I	GCAGC	5 cut(s)	21, 1420, 1682, 1921, 2179
BstV2I	GAAGAC	2 cut(s)	138, 162
BstX2I	RGATCY	4 cut(s)	124, 498, 964, 1810
BstYI	RGATCY	4 cut(s)	124, 498, 964, 1810
BsuRI	GGCC	3 cut(s)	399, 2401, 2416
BtgI	CCRYGG	2 cut(s)	258, 2136
BtsCI	GGATG	6 cut(s)	135, 478, 645, 683, 1216, 2670
BtsI	GCAGTG	1 cut(s)	2602
BtsIMutI	CAGTG	4 cut(s)	700, 736, 1875, 2602
Cac8I	GCNNGC	4 cut(s)	55, 1077, 1563, 1953
CaiI	CAGNNNCTG	1 cut(s)	1262
CfoI	GCGC	1 cut(s)	1519
Cfr13I	GGNCC	2 cut(s)	1043, 1313
CseI	GACGC	2 cut(s)	1680, 2290
Csp6I	GTAC	6 cut(s)	231, 434, 750, 1397, 1854, 2065
CviQI	GTAC	6 cut(s)	231, 434, 750, 1397, 1854, 2065
DpnI	GATC	7 cut(s)	126, 500, 966, 983, 1361, 1536, 1812
DpnII	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
DraIII	CACNNNGTG	1 cut(s)	1637
Eam1104I	CTCTTC	5 cut(s)	212, 534, 664, 1419, 1751
EarI	CTCTTC	5 cut(s)	212, 534, 664, 1419, 1751
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	3 cut(s)	258, 2136, 2217
Eco147I	AGGCCT	1 cut(s)	399
Eco24I	GRGCYC	1 cut(s)	224
Eco31I	GGTCTC	2 cut(s)	847, 2044
Eco47I	GGWCC	2 cut(s)	1043, 1313
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	4 cut(s)	174, 414, 422, 1523
Eco88I	CYCGRG	2 cut(s)	112, 208
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	1960
EcoO109I	RGGNCCY	1 cut(s)	1313
EcoRI	GAATTC	1 cut(s)	919
EcoRII	CCWGG	2 cut(s)	1399, 2233
EcoT14I	CCWWGG	3 cut(s)	258, 2136, 2217
EcoT22I	ATGCAT	3 cut(s)	196, 683, 719
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	3 cut(s)	258, 2136, 2217
FaqI	GGGAC	4 cut(s)	187, 893, 2293, 2527
Fnu4HI	GCNGC	6 cut(s)	10, 1409, 1597, 1671, 1935, 2193
FokI	GGATG	6 cut(s)	122, 485, 652, 690, 1223, 2657
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	6 cut(s)	10, 1409, 1597, 1671, 1935, 2193
GlaI	GCGC	1 cut(s)	1518
GluI	GCNGC	6 cut(s)	10, 1409, 1597, 1671, 1935, 2193
GsaI	CCCAGC	1 cut(s)	964
GsuI	CTGGAG	1 cut(s)	2217
HaeIII	GGCC	3 cut(s)	399, 2401, 2416
HapII	CCGG	3 cut(s)	809, 1230, 2378
HgaI	GACGC	2 cut(s)	1680, 2290
HhaI	GCGC	1 cut(s)	1519
Hin1I	GRCGYC	1 cut(s)	1691
Hin6I	GCGC	1 cut(s)	1517
HinP1I	GCGC	1 cut(s)	1517
HincII	GTYRAC	2 cut(s)	1189, 2098
HindII	GTYRAC	2 cut(s)	1189, 2098
HindIII	AAGCTT	1 cut(s)	1274
HinfI	GANTC	9 cut(s)	200, 1159, 1243, 1340, 1373, 1754, 2296, 2490, 2709
HpaII	CCGG	3 cut(s)	809, 1230, 2378
HphI	GGTGA	5 cut(s)	1168, 1444, 1451, 2179, 2358
Hpy166II	GTNNAC	7 cut(s)	271, 361, 1043, 1189, 1397, 2065, 2098
Hpy8I	GTNNAC	7 cut(s)	271, 361, 1043, 1189, 1397, 2065, 2098
Hpy99I	CGWCG	2 cut(s)	238, 1769
HpyCH4III	ACNGT	6 cut(s)	628, 695, 731, 763, 1147, 1870
HpyCH4IV	ACGT	2 cut(s)	233, 953
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 170, 957, 1262, 1697, 1922, 1931
HpySE526I	ACGT	2 cut(s)	233, 953
Hsp92I	GRCGYC	1 cut(s)	1691
HspAI	GCGC	1 cut(s)	1517
Kpn2I	TCCGGA	2 cut(s)	1229, 2377
Kzo9I	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
LguI	GCTCTTC	2 cut(s)	212, 1751
LmnI	GCTCC	8 cut(s)	703, 739, 1021, 1741, 1966, 2002, 2033, 2476
Lsp1109I	GCAGC	5 cut(s)	21, 1420, 1682, 1921, 2179
LweI	GCATC	9 cut(s)	553, 668, 704, 779, 1083, 1285, 1711, 2095, 2676
MaeII	ACGT	2 cut(s)	233, 953
MaeIII	GTNAC	7 cut(s)	463, 525, 1156, 1300, 1385, 1891, 2176
MalI	GATC	7 cut(s)	126, 500, 966, 983, 1361, 1536, 1812
MbiI	CCGCTC	1 cut(s)	2036
MboI	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
MflI	RGATCY	4 cut(s)	124, 498, 964, 1810
MhlI	GDGCHC	3 cut(s)	224, 700, 736
MlyI	GAGTC	6 cut(s)	209, 1153, 1252, 1382, 1748, 2290
MmeI	TCCRAC	1 cut(s)	1747
Mph1103I	ATGCAT	3 cut(s)	196, 683, 719
MroI	TCCGGA	2 cut(s)	1229, 2377
MroXI	GAANNNNTTC	1 cut(s)	2166
MseI	TTAA	6 cut(s)	99, 522, 935, 1799, 2147, 2273
MslI	CAYNNNNRTG	3 cut(s)	407, 1293, 2127
MspA1I	CMGCKG	3 cut(s)	960, 2018, 2192
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	3 cut(s)	809, 1230, 2378
MspR9I	CCNGG	2 cut(s)	1401, 2235
Mva1269I	GAATGC	3 cut(s)	305, 1288, 2703
MvaI	CCWGG	2 cut(s)	1401, 2235
MwoI	GCNNNNNNNGC	7 cut(s)	63, 170, 957, 1262, 1697, 1922, 1931
NcoI	CCATGG	2 cut(s)	258, 2136
NdeII	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
NheI	GCTAGC	2 cut(s)	1561, 1951
NlaIV	GGNNCC	6 cut(s)	109, 645, 792, 966, 1314, 1737
NmuCI	GTSAC	3 cut(s)	1156, 1891, 2176
NsiI	ATGCAT	3 cut(s)	196, 683, 719
NspI	RCATGY	2 cut(s)	1079, 2499
NspV	TTCGAA	1 cut(s)	2707
PaeI	GCATGC	1 cut(s)	1079
PaeR7I	CTCGAG	2 cut(s)	112, 208
PceI	AGGCCT	1 cut(s)	399
PciSI	GCTCTTC	2 cut(s)	212, 1751
PcsI	WCGNNNNNNNCGW	1 cut(s)	2475
PctI	GAATGC	3 cut(s)	305, 1288, 2703
PdmI	GAANNNNTTC	1 cut(s)	2166
PfeI	GAWTC	3 cut(s)	1340, 2490, 2709
PflMI	CCANNNNNTGG	2 cut(s)	2142, 2597
PfoI	TCCNGGA	1 cut(s)	2233
PkrI	GCNGC	6 cut(s)	11, 1410, 1598, 1672, 1936, 2194
PleI	GAGTC	6 cut(s)	208, 1153, 1251, 1381, 1748, 2290
PpsI	GAGTC	6 cut(s)	208, 1153, 1251, 1381, 1748, 2290
PpuMI	RGGWCCY	1 cut(s)	1313
Psp124BI	GAGCTC	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	1313
Psp6I	CCWGG	2 cut(s)	1399, 2233
PspFI	CCCAGC	1 cut(s)	960
PspGI	CCWGG	2 cut(s)	1399, 2233
PspN4I	GGNNCC	6 cut(s)	109, 645, 792, 966, 1314, 1737
PspPI	GGNCC	2 cut(s)	1043, 1313
PspPPI	RGGWCCY	1 cut(s)	1313
PstI	CTGCAG	1 cut(s)	1624
PstNI	CAGNNNCTG	1 cut(s)	1262
PsuI	RGATCY	4 cut(s)	124, 498, 964, 1810
PvuII	CAGCTG	2 cut(s)	960, 2018
RsaI	GTAC	6 cut(s)	232, 435, 751, 1398, 1855, 2066
RsaNI	GTAC	6 cut(s)	231, 434, 750, 1397, 1854, 2065
RseI	CAYNNNNRTG	3 cut(s)	407, 1293, 2127
SacI	GAGCTC	1 cut(s)	224
SapI	GCTCTTC	2 cut(s)	212, 1751
SaqAI	TTAA	6 cut(s)	99, 522, 935, 1799, 2147, 2273
SatI	GCNGC	6 cut(s)	10, 1409, 1597, 1671, 1935, 2193
Sau3AI	GATC	7 cut(s)	124, 498, 964, 981, 1359, 1534, 1810
Sau96I	GGNCC	2 cut(s)	1043, 1313
ScaI	AGTACT	2 cut(s)	435, 751
SchI	GAGTC	6 cut(s)	209, 1153, 1252, 1382, 1748, 2290
ScrFI	CCNGG	2 cut(s)	1401, 2235
SduI	GDGCHC	3 cut(s)	224, 700, 736
SfaNI	GCATC	9 cut(s)	553, 668, 704, 779, 1083, 1285, 1711, 2095, 2676
SfcI	CTRYAG	2 cut(s)	1620, 1708
Sfr274I	CTCGAG	2 cut(s)	112, 208
SfuI	TTCGAA	1 cut(s)	2707
SinI	GGWCC	2 cut(s)	1043, 1313
SlaI	CTCGAG	2 cut(s)	112, 208
SmiMI	CAYNNNNRTG	3 cut(s)	407, 1293, 2127
SmlI	CTYRAG	7 cut(s)	98, 112, 208, 223, 311, 2483, 2676
SmoI	CTYRAG	7 cut(s)	98, 112, 208, 223, 311, 2483, 2676
SphI	GCATGC	1 cut(s)	1079
SseBI	AGGCCT	1 cut(s)	399
SsiI	CCGC	3 cut(s)	1596, 2036, 2190
SstI	GAGCTC	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	1399, 2233
StyI	CCWWGG	3 cut(s)	258, 2136, 2217
TaaI	ACNGT	6 cut(s)	628, 695, 731, 763, 1147, 1870
TaiI	ACGT	2 cut(s)	236, 956
TaqI	TCGA	7 cut(s)	113, 129, 209, 236, 2299, 2337, 2707
TatI	WGTACW	3 cut(s)	433, 749, 2064
TauI	GCSGC	1 cut(s)	1599
TfiI	GAWTC	3 cut(s)	1340, 2490, 2709
Tru1I	TTAA	6 cut(s)	99, 522, 935, 1799, 2147, 2273
Tru9I	TTAA	6 cut(s)	99, 522, 935, 1799, 2147, 2273
TscAI	CASTG	4 cut(s)	700, 736, 1875, 2602
TseFI	GTSAC	3 cut(s)	1156, 1891, 2176
TseI	GCWGC	5 cut(s)	9, 1408, 1670, 1934, 2192
Tsp45I	GTSAC	3 cut(s)	1156, 1891, 2176
TspDTI	ATGAA	9 cut(s)	290, 448, 489, 527, 1705, 1779, 2344, 2435, 2672
TspRI	CASTG	4 cut(s)	700, 736, 1875, 2602
Van91I	CCANNNNNTGG	2 cut(s)	2142, 2597
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	1043, 1313
XagI	CCTNNNNNAGG	1 cut(s)	1960
XapI	RAATTY	8 cut(s)	545, 859, 919, 1003, 1172, 1578, 1773, 2286
XbaI	TCTAGA	1 cut(s)	1694
XceI	RCATGY	2 cut(s)	1079, 2499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2134
XhoI	CTCGAG	2 cut(s)	112, 208
XmnI	GAANNNNTTC	1 cut(s)	2166
ZrmI	AGTACT	2 cut(s)	435, 751
Zsp2I	ATGCAT	3 cut(s)	196, 683, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.