Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

63907804 .. 63911365

Gene Structure 3562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTTTTCTTGTATTTAAATGCCGACTGGATCTTAACTCATTTTCACGGTTTGGTTGAATTTCTGAGCAGTGGAGCTGTTGAGAGGGAAATGAAAGTTTCGAGCATGAAGGACCCCATTCAAACCATACCTGATGTTTTTGCGGTTGTCATTCAAGCCAAGGTTGCATTTGGTCGTATTGTGAAATTCCTTGAGGCACCTGAGCTGCAAACTTCAAATGTCCGGAAGTGCAACATGAAGAATTGTCAGCTTCTAGAGGCTGTTGAGGAGAAAGAAAAAAGCTTGGACTCGTTAGTGGCCCACAGGATACCAACTGTGATGGATTGCACAATGGTTCTTGCCATTAGTGATGGAAAGATAGTGGAGTATGATGAGCCAATGAGGTTGATGAAGAGAGAAGGCTCGCTGTTTGGGCAGCTTGTCAAGGAGTACTGGTCTCATCTCCAGTCTGCAGAATCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

154

Amino Acids

17.58

Weight (kDa)

5.73

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	59, 185
AfaI	GTAC	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	59, 122, 155, 216
AluBI	AGCT	5 cut(s)	77, 205, 250, 282, 418
AluI	AGCT	5 cut(s)	77, 205, 250, 282, 418
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	38
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	205, 415
ApoI	RAATTY	2 cut(s)	59, 185
AspS9I	GGNCC	2 cut(s)	112, 298
AvaII	GGWCC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	192, 427
BccI	CCATC	2 cut(s)	313, 344
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	2 cut(s)	206, 416
BlsI	GCNGC	2 cut(s)	207, 417
BmcAI	AGTACT	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	112, 298
BmiI	GGNNCC	2 cut(s)	114, 198
BpmI	CTGGAG	1 cut(s)	428
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bse1I	ACTGG	3 cut(s)	32, 437, 445
BseAI	TCCGGA	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	56, 192
BseNI	ACTGG	3 cut(s)	32, 437, 445
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	192, 427
BshFI	GGCC	1 cut(s)	299
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	299
Bso31I	GGTCTC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	143
BspANI	GGCC	1 cut(s)	299
BspCNI	CTCAG	2 cut(s)	57, 193
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	114, 198
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	32, 437, 445
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	50, 316
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	65, 201
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 412
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	2 cut(s)	192, 427
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	112, 298
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	106, 235
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	65, 201
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraI	TTTAAA	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	109, 238
FaiI	YATR	4 cut(s)	107, 128, 236, 369
FatI	CATG	2 cut(s)	105, 234
Fnu4HI	GCNGC	2 cut(s)	206, 416
Fsp4HI	GCNGC	2 cut(s)	206, 416
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	2 cut(s)	206, 416
GsuI	CTGGAG	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	299
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	2 cut(s)	109, 238
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	2 cut(s)	287, 455
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	2 cut(s)	223, 254
HpyAV	CCTTC	2 cut(s)	103, 392
HpyCH4III	ACNGT	2 cut(s)	50, 316
HpyCH4V	TGCA	5 cut(s)	167, 208, 231, 327, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 412
HpyF3I	CTNAG	2 cut(s)	65, 201
Hsp92II	CATG	2 cut(s)	109, 238
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	74
LpnPI	CCDG	7 cut(s)	13, 144, 213, 236, 289, 418, 458
Lsp1109I	GCAGC	2 cut(s)	192, 427
MaeI	CTAG	1 cut(s)	254
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	250, 403
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	3 cut(s)	59, 185, 241
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	78, 187, 250, 259, 375
MroI	TCCGGA	1 cut(s)	222
MseI	TTAA	2 cut(s)	17, 35
MspI	CCGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	164, 412
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	2 cut(s)	109, 238
NlaIV	GGNNCC	2 cut(s)	114, 198
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	207, 417
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	114, 198
PspPI	GGNCC	2 cut(s)	112, 298
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	17, 35
SatI	GCNGC	2 cut(s)	206, 416
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	2 cut(s)	112, 298
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	281
SetI	ASST	9 cut(s)	79, 133, 165, 202, 207, 252, 284, 386, 420
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	112
SmiI	ATTTAAAT	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	59, 185, 241
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	159
SwaI	ATTTAAAT	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	50, 316
TaqI	TCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	59, 185, 241
TatI	WGTACW	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	17, 35
Tru9I	TTAA	2 cut(s)	17, 35
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	2 cut(s)	205, 415
TspDTI	ATGAA	4 cut(s)	107, 122, 251, 404
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	2 cut(s)	59, 185
XbaI	TCTAGA	1 cut(s)	253
XspI	CTAG	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.