Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Forward (+)

47806383 .. 47808987

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0375000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCTTCTTTTTTTATCTTCCATTCAGATTGTTAGGTTGATATATGCAAAATCTGGAGCGATACTGGCATTGACTCATAGTGGGGTACATAAACTTTGGATTTGGAAGAATGAGCAGAATGTTTTGGGAAAGGGAACTACTATTGTGCCACCAGAGTTCTTGAAATCTCAAATTGGAATATCGATGACCAATGATATACTTGGGACGCACTGTGAAGATTCTGTTGCTTGCTTTGCAGTTTCAAAGAATGAATCTTTTCTTGTGTCTGCATCAGGAGGGGAAATCTCTATTTTCAATATGATAACTTTCAAGAGGATGATATCCTTTAAGCCCTCACCATCAGCAGCAACATGTCTTGCCTTCAAACCGCAGGATAATAACTTCATTGCCATAGGCATGGAGGATTCAACAATTCACATCTACAATGTCGACACTGGCGAGGTCAATCCCACGATCAAAGGCCACCGTGAGAGAGTAACGGGCCTAGCCTTCTCCACTATTCTAAACGTTCTTGTTTCATCAGGAGCTGATTCTGAGCTGATGGTTTGGAGTCTGGATGGATGGGAAAAGCAGGCTGGTAAGCTCTTGAAGAGTCCTGCTGGTCCTTTGTCTAAACCTCCTGCTCAGATTGGCATTAAATTTCAGAAAGATGAGATACACCTTCTAGTTATACAGGACACCCAGTTAGCCATATATGAAGCATCAAAGTTGGAGTGCCTTGAGCAGTGGGTGCCTCGAGCATCTATTGGTCTTATCACAGATGCTACATATTCATGCGATTGCCGGTCAGTCTATGCAACCTTTGAAGATGGAAATGTGTCAATTTTAACTATCCCCTCTTTCCAACTCCGATGTCGGATATACCCTACTGCATATCTACCTTCTAGTCCAAGCAGCAGAATGGTATACCCAGCTGCAGTTGCGGCTCATCCATGTGAATCTAATCAGTTTGCCATTGGACTTAGTGATGGTGGAGTTGTGGTTCTTGAGCCTCCAGAATCAACGGAGCAATGGGGATCTATGCCTCCGGTTGAGAGTGCAGGGCATAGATACAGAGGAGCTACAAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

357

Amino Acids

38.88

Weight (kDa)

5.92

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	68 - 186	5.7e-13	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	69 - 189	1.1e-14	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	70 - 185	2.4e-06	WDR55
WD40_CDC20-Fz	PF24807	71 - 187	1.2e-12	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	73 - 282	2e-16	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	73 - 275	4e-13	WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	74 - 185	2.7e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3	PF25174	75 - 189	6.5e-13	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	75 - 191	1.2e-12	WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	84 - 185	6.5e-11	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	87 - 185	1.6e-17	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	87 - 186	4.1e-12	WDR36/Utp21 first beta-propeller
Beta-prop_IFT140_1st	PF23383	89 - 188	8e-08	IFT140 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	92 - 187	8.9e-09	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	124 - 282	6e-10	WDR36/Utp21 second beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	730
AccI	GTMKAC	2 cut(s)	429, 906
AciI	CCGC	2 cut(s)	368, 923
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	1 cut(s)	1024
AcsI	RAATTY	2 cut(s)	638, 1066
AfaI	GTAC	1 cut(s)	87
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	8 cut(s)	163, 243, 295, 310, 364, 408, 589, 806
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
AluBI	AGCT	5 cut(s)	527, 538, 583, 914, 1061
AluI	AGCT	5 cut(s)	527, 538, 583, 914, 1061
AlwI	GGATC	1 cut(s)	1024
AlwNI	CAGNNNCTG	1 cut(s)	527
Ama87I	CYCGRG	1 cut(s)	735
AoxI	GGCC	2 cut(s)	460, 481
ApeKI	GCWGC	3 cut(s)	344, 894, 914
ApoI	RAATTY	2 cut(s)	638, 1066
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	481, 602
AsuHPI	GGTGA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	735
AvaII	GGWCC	1 cut(s)	602
BanI	GGYRCC	1 cut(s)	730
BbvI	GCAGC	3 cut(s)	356, 901, 906
BccI	CCATC	6 cut(s)	346, 535, 551, 555, 803, 962
BfaI	CTAG	3 cut(s)	485, 665, 885
BfmI	CTRYAG	1 cut(s)	915
BisI	GCNGC	4 cut(s)	345, 895, 915, 924
BlsI	GCNGC	4 cut(s)	346, 896, 916, 925
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	735
BmgT120I	GGNCC	2 cut(s)	481, 602
BmiI	GGNNCC	1 cut(s)	732
BmrI	ACTGGG	1 cut(s)	676
BmsI	GCATC	4 cut(s)	278, 710, 749, 751
BmuI	ACTGGG	1 cut(s)	676
BpmI	CTGGAG	2 cut(s)	75, 978
BpuEI	CTTGAG	2 cut(s)	740, 1007
Bsa29I	ATCGAT	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bse118I	RCCGGY	1 cut(s)	783
Bse1I	ACTGG	3 cut(s)	69, 439, 682
Bse3DI	GCAATG	2 cut(s)	384, 1016
BseCI	ATCGAT	1 cut(s)	182
BseGI	GGATG	4 cut(s)	321, 562, 566, 928
BseMI	GCAATG	2 cut(s)	384, 1016
BseMII	CTCAG	2 cut(s)	525, 638
BseNI	ACTGG	3 cut(s)	69, 439, 682
BseRI	GAGGAG	1 cut(s)	1071
BseXI	GCAGC	3 cut(s)	356, 901, 906
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	1 cut(s)	1059
BshFI	GGCC	2 cut(s)	462, 483
BshNI	GGYRCC	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	735
BsiSI	CCGG	2 cut(s)	784, 1028
BslFI	GGGAC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	462, 483
BsoBI	CYCGRG	1 cut(s)	735
Bsp143I	GATC	2 cut(s)	453, 1016
BspACI	CCGC	2 cut(s)	368, 923
BspANI	GGCC	2 cut(s)	462, 483
BspCNI	CTCAG	2 cut(s)	526, 637
BspDI	ATCGAT	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	732
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	1 cut(s)	1024
BspT107I	GGYRCC	1 cut(s)	730
BsrDI	GCAATG	2 cut(s)	384, 1016
BsrFI	RCCGGY	1 cut(s)	783
BsrI	ACTGG	3 cut(s)	69, 439, 682
BssAI	RCCGGY	1 cut(s)	783
BssMI	GATC	2 cut(s)	453, 1016
BssNAI	GTATAC	1 cut(s)	907
Bst1107I	GTATAC	1 cut(s)	907
Bst4CI	ACNGT	2 cut(s)	212, 467
Bst6I	CTCTTC	1 cut(s)	584
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstC8I	GCNNGC	2 cut(s)	229, 573
BstDEI	CTNAG	3 cut(s)	534, 624, 962
BstF5I	GGATG	4 cut(s)	321, 562, 566, 928
BstKTI	GATC	2 cut(s)	456, 1019
BstMBI	GATC	2 cut(s)	453, 1016
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 233, 730, 920, 923
BstNSI	RCATGY	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	3 cut(s)	356, 901, 906
BstX2I	RGATCY	1 cut(s)	1016
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	1016
BstZ17I	GTATAC	1 cut(s)	907
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	462, 483
BsuTUI	ATCGAT	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	321, 562, 566, 928
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	3 cut(s)	208, 432, 731
Cac8I	GCNNGC	2 cut(s)	229, 573
CaiI	CAGNNNCTG	1 cut(s)	527
Cfr10I	RCCGGY	1 cut(s)	783
Cfr13I	GGNCC	2 cut(s)	481, 602
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	4 cut(s)	351, 397, 774, 933
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	3 cut(s)	534, 624, 962
DpnI	GATC	2 cut(s)	455, 1018
DpnII	GATC	2 cut(s)	453, 1016
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	321
FaeI	CATG	4 cut(s)	354, 400, 777, 936
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	4 cut(s)	350, 396, 773, 932
FblI	GTMKAC	2 cut(s)	429, 906
Fnu4HI	GCNGC	4 cut(s)	345, 895, 915, 924
FokI	GGATG	4 cut(s)	328, 569, 573, 915
Fsp4HI	GCNGC	4 cut(s)	345, 895, 915, 924
FspBI	CTAG	3 cut(s)	485, 665, 885
GluI	GCNGC	4 cut(s)	345, 895, 915, 924
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	2 cut(s)	75, 978
HaeIII	GGCC	2 cut(s)	462, 483
HapII	CCGG	2 cut(s)	784, 1028
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	354, 400, 777, 936
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	9 cut(s)	73, 218, 251, 404, 530, 550, 592, 938, 998
HpaII	CCGG	2 cut(s)	784, 1028
HphI	GGTGA	1 cut(s)	327
Hpy166II	GTNNAC	2 cut(s)	430, 907
Hpy188I	TCNGA	6 cut(s)	27, 535, 627, 645, 851, 858
Hpy188III	TCNNGA	9 cut(s)	54, 160, 273, 310, 522, 554, 586, 986, 995
Hpy8I	GTNNAC	2 cut(s)	430, 907
HpyAV	CCTTC	4 cut(s)	370, 499, 671, 891
HpyCH4III	ACNGT	2 cut(s)	212, 467
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	7 cut(s)	47, 236, 269, 797, 872, 917, 1040
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 233, 730, 920, 923
HpyF3I	CTNAG	3 cut(s)	534, 624, 962
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	4 cut(s)	354, 400, 777, 936
Kzo9I	GATC	2 cut(s)	453, 1016
LmnI	GCTCC	4 cut(s)	56, 524, 1006, 1058
Lsp1109I	GCAGC	3 cut(s)	356, 901, 906
LweI	GCATC	4 cut(s)	278, 710, 749, 751
MaeI	CTAG	3 cut(s)	485, 665, 885
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	2 cut(s)	455, 1018
MboI	GATC	2 cut(s)	453, 1016
MboII	GAAGA	5 cut(s)	9, 118, 227, 601, 818
MflI	RGATCY	1 cut(s)	1016
MluCI	AATT	5 cut(s)	171, 411, 638, 822, 1066
MlyI	GAGTC	3 cut(s)	67, 559, 601
MmeI	TCCRAC	3 cut(s)	690, 836, 868
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	3 cut(s)	327, 636, 827
MslI	CAYNNNNRTG	3 cut(s)	395, 772, 933
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	2 cut(s)	784, 1028
MwoI	GCNNNNNNNGC	5 cut(s)	65, 233, 730, 920, 923
NdeII	GATC	2 cut(s)	453, 1016
NlaIII	CATG	4 cut(s)	354, 400, 777, 936
NlaIV	GGNNCC	1 cut(s)	732
NspI	RCATGY	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	735
PciI	ACATGT	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	6 cut(s)	218, 251, 404, 530, 938, 998
PkrI	GCNGC	4 cut(s)	346, 896, 916, 925
PleI	GAGTC	3 cut(s)	67, 558, 600
PpsI	GAGTC	3 cut(s)	67, 558, 600
PscI	ACATGT	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	507
PspFI	CCCAGC	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	732
PspPI	GGNCC	2 cut(s)	481, 602
PspXI	VCTCGAGB	1 cut(s)	735
PstI	CTGCAG	1 cut(s)	919
PstNI	CAGNNNCTG	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	1016
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
RseI	CAYNNNNRTG	3 cut(s)	395, 772, 933
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	327, 636, 827
SatI	GCNGC	4 cut(s)	345, 895, 915, 924
Sau3AI	GATC	2 cut(s)	453, 1016
Sau96I	GGNCC	2 cut(s)	481, 602
SchI	GAGTC	3 cut(s)	67, 559, 601
SfaNI	GCATC	4 cut(s)	278, 710, 749, 751
SfcI	CTRYAG	1 cut(s)	915
Sfr274I	CTCGAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	735
SmiMI	CAYNNNNRTG	3 cut(s)	395, 772, 933
SmlI	CTYRAG	3 cut(s)	719, 735, 986
SmoI	CTYRAG	3 cut(s)	719, 735, 986
Sse9I	AATT	5 cut(s)	171, 411, 638, 822, 1066
SsiI	CCGC	2 cut(s)	368, 923
SspMI	CTAG	3 cut(s)	485, 665, 885
TaaI	ACNGT	2 cut(s)	212, 467
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	3 cut(s)	182, 429, 736
TasI	AATT	5 cut(s)	171, 411, 638, 822, 1066
TauI	GCSGC	1 cut(s)	926
TfiI	GAWTC	6 cut(s)	218, 251, 404, 530, 938, 998
Tru1I	TTAA	3 cut(s)	327, 636, 827
Tru9I	TTAA	3 cut(s)	327, 636, 827
TscAI	CASTG	3 cut(s)	215, 439, 731
TseI	GCWGC	3 cut(s)	344, 894, 914
TspDTI	ATGAA	5 cut(s)	264, 373, 507, 711, 762
TspGWI	ACGGA	1 cut(s)	1019
TspRI	CASTG	3 cut(s)	215, 439, 731
VpaK11BI	GGWCC	1 cut(s)	602
XapI	RAATTY	2 cut(s)	638, 1066
XceI	RCATGY	1 cut(s)	354
XhoI	CTCGAG	1 cut(s)	735
XmiI	GTMKAC	2 cut(s)	429, 906
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	3 cut(s)	485, 665, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.