Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Forward (+)

63909076 .. 63913810

Gene Structure 4735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G038950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

ATGAGAATGAGGTCAGCCTTGATGGTTGCAGTCTATCAAAAGCAGCTGAAGCTTTCTAGTTTGGGAAGGAGAAAGCACTCAGCTGGAGAGATTGTGAATTACATAGCAGTGGATGCTTATCGAATGGGGGAGTTCCTATGGTGGTTTCATTCGACATGGAGTCTTTCGTTGCAACCATTGCTTTCCATTGTTGTACTTTATGTGGTCGCGGGTGTTGGTGCTCTACCTGGTTTAGTTCCTCTTATCATGTTTGGTCTTCTGAATGTACTTCAGAAGTGTCAGTCTGAGTTCATGGTAGCTCAGGATGAAAGGCTTAGAGCCACCTCTGAGATCCTAAACAGCATGAAAATCATTAAGTTACAAACATGGGAAGAGAAATTCAAAAACTCGGTTGATGCCCTTCGCGAAAGAGAGTTCAAACCATTGGCTGAGGCACAATTTGAAAAGGCTTATGGAACTGTCATGTATTGGATGGCACCAACCATCATCTCTTCGGCACAATTTCAAAAGGCTTATGGAACTGTCATGTATTGGATGGCACCAACCATCATCTCTTCGGTTGTTTTTCTAGGATGCATTGTTTTCAACAGTGCTCCTGTAAATGCAAGTACTATATTCACAGTTCTAGCATCATTGAAAAGTATGGGGGAACCTGTCAGGTTTATACCGGAAGCACTTTCAGTTATGATACAAGTCAAGGTCTCGTTTGATCGGCTGAATTTTTTTCTGCTTGATAATGAGCTAAAGGATAGTGAAATAAGGAAAGTCCCATCACAGAATTCAGATGAGAGCTTAAAAATAGAAAGTGGCACGTTCAGCTGGGATCCTGAACTAACAACGATCCCAACTCTGAGAGATGTGAATTTGGAAGTAAAATGGGAGCAGAAAATTACAGTTTGTGGACCAGTTGGTGCTGGAAAATCATCACTTTTGCATGCTTTACTTGGAGAGATGCCAAAAATGTCAGGAATGGTTGATTTATTTGGAAGCATAGCCTATGTTTCTCAGACTTCTTGGATACAAAGTAGGACAGTTCGTGATAACATACTCTTCGGCAAACCAATGGACAAGAGCAGATATGAGAAGGCCATAAAAGCTTGTGCTTTGGATAAAGATATTACTAGCTTTGATCGTGGACAAAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAATGATGCTGATATCTATCTCCTTGATGACCCCTTTAGTGCCGTGGATGCAAATACAGCTGCAATTCTATTTAGTGATTGTGTCATGTCTGCTCTTGCAAAGAAAACTGTAATTCTGGAGACTCATCAAGTTGAATTTCTCTCACAAGTTGACAAGATTTTGGAACACAGTTTTTTTCCTCACTATTTCCTTTTCCAAGTAATTGAGGATGGACAAATTACTCAATCCGGAAGCTACAAGAGTCTCTTGACAGCAGGAACTGCATTTGCGAAGCTTGTGAATGCTCACAAAGATGCAGTAACAACATTGGGTCCTTCAAACTATCAAGTTCAAGAAGATTCTGAAAAGGAAGATATGATCCAGCCAGAGGAGTCTTATGGGAGTAACCGTAGTGTACCTGGGGTGCAGCTAACAGAAGAAGAAGAGAAGGTGATTGGTGATGTGGGGTTGAAGCCCTTTTGGGATTACATTTTTGTTTCTAAGGCAACACTTCTTCTTTGCTTAGGCACAATAGCGCCGATTGGTTTTCTTGGTCTTCAGGTTGCTTCAACTTACTGGCTAGCTCTAGCCATTCAAATTCCTAAAATAACTAGCGGCATACTCATCGGAGTTTATACTGCAGTATCAACACTTGGTGTTGTCTTTGTATTTCTAAGGTCATACTTCGCAGCCCTTATGGGATTGAAGGCGTCTAGAGCATTTTTTCTATATTTAGATTTAAGTATATTGGATCTTGACATACCTTTCGCTACAATCTTTCTGGTGGCTTCTGGTACTGAACTGCTGACAGTGATTGGAATTATGGCTTCTGTCACATGGGAAGTTCTCATTGTAGCCATTCTTGCCATTATTGCTGCACAATATGTTCAGAGTTACTATCTAGCCTCTGCAAGGGAGCTGATAAGAATAAATGGAACAACAAAAGCTCCCGTAATAAATTATACAGCTGAGACATCACTTGGAGTGGGTCTCTATAAGAGCTTTTACAATGTGGTTAATTTTGAGGACAGAAGCACTTCAAAATTTGTGACCCTTTTCACCGCTGCTTTTCTCCTTATTCTACTTCCCAAGGGTTATGTTTCTCCAGGACTTGTGGGGCTTTCTCTTTCTTATGCTTTGACATTAACGGGGATGCAAATTTATCAGACTCGATGGTATTGCAATTTATCAAACTACATTATCTTAGTCGAAAGGATAAAACAATTCATGCAGATTTCACCTGAGCCTCCGGAAATTGTGGAGGACAATAGGCCACCTTCTTCATGGCCTATGAAGGGTAGGATAGAGCTGTATTCTCTGAATATCAAATATCGTCAGAACTCTCCACTCGTTCTCAAGGGAATCACATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGTGGCAAAACTACAGTACTCATAAGTGCTTTGTTTCGTTTAGTAGAGCCAAGCAGTGGTAAAATTATTATAGATGGACTTGACATCTTCTCTATTGGTCTAAAAGATTTGAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACACTTTTCAGGGGTAGCATTCGAACCAACTTGGATCCTCTAGGCCTATACTCTGACGATGAAATATGGAGGGCTCTAGAGAAGTGTCAGCTCAAGGCAACAGTCAGTAGCCTACCTAATTTTCTGGACTCGTCTGTGAGTGATGAAGGGGGAAATTGGAGTGCCGGGCAGCGCCAGCTATTTTGCCTTGGAAGAGTGCTTCTCAAGAGGAACAGGATTCTAGTTCTAGATGAGGCTACTGCTTCCATTGATTCTGCAACAGATGCCATTCTACAAAAAGAATCATCAGGGAAGCTGGTGGAGTATGAAGAACCCTCAAAGCTCTTGGATACCAATTCCTATCCTCCAAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

1022

Amino Acids

113.69

Weight (kDa)

6.32

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	1 - 166	2.6e-14	ABC transporter transmembrane region
ABC_tran	PF00005	284 - 403	6.3e-16	ABC transporter
ABC_tran	PF00005	836 - 985	2.8e-24	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	475, 538
AccB7I	CCANNNNNTGG	1 cut(s)	2624
AccII	CGCG	2 cut(s)	209, 405
AccIII	TCCGGA	2 cut(s)	1400, 2401
AciI	CCGC	3 cut(s)	209, 1767, 2214
AclWI	GGATC	8 cut(s)	325, 818, 831, 835, 1525, 1911, 2741, 2754
AcsI	RAATTY	8 cut(s)	377, 718, 778, 862, 1307, 1749, 2195, 2310
AcuI	CTGAAG	3 cut(s)	68, 254, 1694
AcyI	GRCGYC	1 cut(s)	1862
AdeI	CACNNNGTG	1 cut(s)	1808
AfaI	GTAC	6 cut(s)	195, 267, 610, 1569, 1948, 2586
AfiI	CCNNNNNNNGG	4 cut(s)	1540, 2064, 2447, 2624
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	3 cut(s)	226, 1570, 2257
Alw21I	GWGCWC	2 cut(s)	223, 595
Alw26I	GTCTC	5 cut(s)	706, 1286, 1421, 2117, 2147
AlwI	GGATC	8 cut(s)	325, 818, 831, 835, 1525, 1911, 2741, 2754
AlwNI	CAGNNNCTG	1 cut(s)	1433
Ama87I	CYCGRG	1 cut(s)	1161
Aor13HI	TCCGGA	2 cut(s)	1400, 2401
AoxI	GGCC	5 cut(s)	1086, 1158, 2423, 2438, 2755
ApeKI	GCWGC	7 cut(s)	43, 1232, 1579, 1841, 2027, 2216, 2881
ApoI	RAATTY	8 cut(s)	377, 718, 778, 862, 1307, 1749, 2195, 2310
ArsI	GACNNNNNNTTYG	2 cut(s)	1901, 1933
Asp700I	GAANNNNTTC	1 cut(s)	2188
AspLEI	GCGC	2 cut(s)	1690, 2886
AspS9I	GGNCC	3 cut(s)	902, 1159, 1484
AsuC2I	CCSGG	1 cut(s)	2878
AsuHPI	GGTGA	4 cut(s)	1615, 1622, 2203, 2382
AsuII	TTCGAA	1 cut(s)	2734
AsuNHI	GCTAGC	1 cut(s)	1732
AvaI	CYCGRG	1 cut(s)	1161
AvaII	GGWCC	2 cut(s)	902, 1484
BaeI	ACNNNNGTAYC	2 cut(s)	1779, 1812
BamHI	GGATCC	2 cut(s)	823, 2746
BanI	GGYRCC	2 cut(s)	475, 538
BanII	GRGCYC	1 cut(s)	2788
BbsI	GAAGAC	2 cut(s)	248, 1700
Bbv12I	GWGCWC	2 cut(s)	223, 595
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	7 cut(s)	55, 1219, 1591, 1853, 2014, 2203, 2893
BccI	CCATC	9 cut(s)	16, 466, 491, 529, 554, 778, 1376, 2319, 2636
BceAI	ACGGC	1 cut(s)	1199
BcgI	CGANNNNNNTGC	4 cut(s)	1759, 1793, 2313, 2347
BciT130I	CCWGG	3 cut(s)	228, 1572, 2259
BciVI	GTATCC	2 cut(s)	1011, 3034
BcnI	CCSGG	1 cut(s)	2878
BcoDI	GTCTC	5 cut(s)	706, 1286, 1421, 2117, 2147
BfmI	CTRYAG	2 cut(s)	1791, 2580
BfoI	RGCGCY	2 cut(s)	1691, 2887
BfuI	GTATCC	2 cut(s)	1011, 3034
BisI	GCNGC	8 cut(s)	44, 1233, 1580, 1768, 1842, 2028, 2217, 2882
BlpI	GCTNAGC	1 cut(s)	2690
BlsI	GCNGC	8 cut(s)	45, 1234, 1581, 1769, 1843, 2029, 2218, 2883
BmcAI	AGTACT	2 cut(s)	610, 2586
Bme1390I	CCNGG	4 cut(s)	228, 1572, 2259, 2878
Bme18I	GGWCC	2 cut(s)	902, 1484
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	1161
BmgT120I	GGNCC	3 cut(s)	902, 1159, 1484
BmiI	GGNNCC	6 cut(s)	477, 540, 651, 825, 1485, 2748
BmrFI	CCNGG	4 cut(s)	228, 1572, 2259, 2878
BmtI	GCTAGC	1 cut(s)	1736
BpiI	GAAGAC	2 cut(s)	248, 1700
BplI	GAGNNNNNCTC	4 cut(s)	2127, 2159, 2898, 2930
BpmI	CTGGAG	3 cut(s)	105, 1310, 2241
Bpu10I	CCTNAGC	4 cut(s)	300, 429, 1675, 2394
Bpu1102I	GCTNAGC	1 cut(s)	2690
Bpu14I	TTCGAA	1 cut(s)	2734
BpuEI	CTTGAG	4 cut(s)	2492, 2688, 2789, 2900
BpuMI	CCSGG	1 cut(s)	2878
BsaBI	GATNNNNATC	2 cut(s)	117, 1188
BsaHI	GRCGYC	1 cut(s)	1862
BsaI	GGTCTC	2 cut(s)	706, 2147
BsaJI	CCNNGG	4 cut(s)	1215, 1571, 2241, 2899
BsaWI	WCCGGW	3 cut(s)	667, 1400, 2401
BsaXI	ACNNNNNCTCC	6 cut(s)	78, 108, 1546, 1576, 2083, 2113
Bsc4I	CCNNNNNNNGG	4 cut(s)	1540, 2064, 2447, 2624
Bse1I	ACTGG	2 cut(s)	905, 1733
Bse3DI	GCAATG	1 cut(s)	176
Bse8I	GATNNNNATC	2 cut(s)	117, 1188
BseAI	TCCGGA	2 cut(s)	1400, 2401
BseBI	CCWGG	3 cut(s)	228, 1572, 2259
BseDI	CCNNGG	4 cut(s)	1215, 1571, 2241, 2899
BseGI	GGATG	9 cut(s)	118, 310, 477, 540, 578, 1225, 1387, 2310, 2697
BseJI	GATNNNNATC	2 cut(s)	117, 1188
BseLI	CCNNNNNNNGG	4 cut(s)	1540, 2064, 2447, 2624
BseMI	GCAATG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	905, 1733
BseRI	GAGGAG	1 cut(s)	1556
BseXI	GCAGC	7 cut(s)	55, 1219, 1591, 1853, 2014, 2203, 2893
BseYI	CCCAGC	1 cut(s)	819
BsgI	GTGCAG	2 cut(s)	1598, 2013
Bsh1236I	CGCG	2 cut(s)	209, 405
BshFI	GGCC	5 cut(s)	1088, 1160, 2425, 2440, 2757
BshNI	GGYRCC	2 cut(s)	475, 538
BsiHKAI	GWGCWC	2 cut(s)	223, 595
BsiHKCI	CYCGRG	1 cut(s)	1161
BsiSI	CCGG	4 cut(s)	668, 1401, 2402, 2877
BslFI	GGGAC	2 cut(s)	752, 2551
BslI	CCNNNNNNNGG	4 cut(s)	1540, 2064, 2447, 2624
BsmAI	GTCTC	5 cut(s)	706, 1286, 1421, 2117, 2147
BsmFI	GGGAC	2 cut(s)	752, 2551
BsmI	GAATGC	2 cut(s)	1459, 2730
BsnI	GGCC	5 cut(s)	1088, 1160, 2425, 2440, 2757
Bso31I	GGTCTC	2 cut(s)	706, 2147
BsoBI	CYCGRG	1 cut(s)	1161
Bsp119I	TTCGAA	1 cut(s)	2734
Bsp1286I	GDGCHC	3 cut(s)	223, 595, 2788
Bsp13I	TCCGGA	2 cut(s)	1400, 2401
Bsp143I	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
Bsp1720I	GCTNAGC	1 cut(s)	2690
Bsp68I	TCGCGA	1 cut(s)	405
BspACI	CCGC	3 cut(s)	209, 1767, 2214
BspANI	GGCC	5 cut(s)	1088, 1160, 2425, 2440, 2757
BspEI	TCCGGA	2 cut(s)	1400, 2401
BspFNI	CGCG	2 cut(s)	209, 405
BspLI	GGNNCC	6 cut(s)	477, 540, 651, 825, 1485, 2748
BspMAI	CTGCAG	1 cut(s)	1795
BspOI	GCTAGC	1 cut(s)	1736
BspPI	GGATC	8 cut(s)	325, 818, 831, 835, 1525, 1911, 2741, 2754
BspT104I	TTCGAA	1 cut(s)	2734
BspT107I	GGYRCC	2 cut(s)	475, 538
BspTNI	GGTCTC	2 cut(s)	706, 2147
BsrDI	GCAATG	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	905, 1733
BssECI	CCNNGG	4 cut(s)	1215, 1571, 2241, 2899
BssMI	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
BssNI	GRCGYC	1 cut(s)	1862
BssT1I	CCWWGG	2 cut(s)	2241, 2899
Bst2UI	CCWGG	3 cut(s)	228, 1572, 2259
Bst6I	CTCTTC	6 cut(s)	366, 496, 559, 1055, 1590, 2899
BstACI	GRCGYC	1 cut(s)	1862
BstAPI	GCANNNNNTGC	4 cut(s)	113, 178, 1433, 2975
BstBI	TTCGAA	1 cut(s)	2734
BstC8I	GCNNGC	4 cut(s)	936, 1158, 1734, 2888
BstDSI	CCRYGG	1 cut(s)	1215
BstENI	CCTNNNNNAGG	1 cut(s)	2062
BstF5I	GGATG	9 cut(s)	118, 310, 477, 540, 578, 1225, 1387, 2310, 2697
BstFNI	CGCG	2 cut(s)	209, 405
BstH2I	RGCGCY	2 cut(s)	1691, 2887
BstHHI	GCGC	2 cut(s)	1690, 2886
BstKTI	GATC	8 cut(s)	333, 712, 826, 843, 1132, 1533, 1906, 2749
BstMAI	GTCTC	5 cut(s)	706, 1286, 1421, 2117, 2147
BstMBI	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
BstNI	CCWGG	3 cut(s)	228, 1572, 2259
BstNSI	RCATGY	2 cut(s)	938, 2523
BstSCI	CCNGG	4 cut(s)	226, 1570, 2257, 2876
BstSFI	CTRYAG	2 cut(s)	1791, 2580
BstUI	CGCG	2 cut(s)	209, 405
BstV1I	GCAGC	7 cut(s)	55, 1219, 1591, 1853, 2014, 2203, 2893
BstV2I	GAAGAC	2 cut(s)	248, 1700
BstX2I	RGATCY	4 cut(s)	330, 823, 1903, 2746
BstYI	RGATCY	4 cut(s)	330, 823, 1903, 2746
BsuI	GTATCC	2 cut(s)	1011, 3034
BsuRI	GGCC	5 cut(s)	1088, 1160, 2425, 2440, 2757
BtgI	CCRYGG	1 cut(s)	1215
BtsCI	GGATG	9 cut(s)	118, 310, 477, 540, 578, 1225, 1387, 2310, 2697
BtsI	GCAGTG	2 cut(s)	114, 2629
BtsIMutI	CAGTG	4 cut(s)	114, 595, 1968, 2629
BtuMI	TCGCGA	1 cut(s)	405
Cac8I	GCNNGC	4 cut(s)	936, 1158, 1734, 2888
CaiI	CAGNNNCTG	1 cut(s)	1433
CfoI	GCGC	2 cut(s)	1690, 2886
Cfr13I	GGNCC	3 cut(s)	902, 1159, 1484
CseI	GACGC	1 cut(s)	1851
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	6 cut(s)	194, 266, 609, 1568, 1947, 2585
CviQI	GTAC	6 cut(s)	194, 266, 609, 1568, 1947, 2585
DpnI	GATC	8 cut(s)	332, 711, 825, 842, 1131, 1532, 1905, 2748
DpnII	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
DraIII	CACNNNGTG	1 cut(s)	1808
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	6 cut(s)	366, 496, 559, 1055, 1590, 2899
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	6 cut(s)	366, 496, 559, 1055, 1590, 2899
Eco130I	CCWWGG	2 cut(s)	2241, 2899
Eco147I	AGGCCT	1 cut(s)	2757
Eco24I	GRGCYC	1 cut(s)	2788
Eco31I	GGTCTC	2 cut(s)	706, 2147
Eco32I	GATATC	1 cut(s)	1186
Eco47I	GGWCC	2 cut(s)	902, 1484
Eco57I	CTGAAG	3 cut(s)	68, 254, 1694
Eco88I	CYCGRG	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	1 cut(s)	2062
EcoO109I	RGGNCCY	1 cut(s)	1484
EcoRI	GAATTC	1 cut(s)	778
EcoRII	CCWGG	3 cut(s)	226, 1570, 2257
EcoRV	GATATC	1 cut(s)	1186
EcoT14I	CCWWGG	2 cut(s)	2241, 2899
EcoT22I	ATGCAT	1 cut(s)	578
EcoT38I	GRGCYC	1 cut(s)	2788
ErhI	CCWWGG	2 cut(s)	2241, 2899
FalI	AAGNNNNNCTT	2 cut(s)	1403, 1435
FaqI	GGGAC	2 cut(s)	752, 2551
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	8 cut(s)	44, 1233, 1580, 1768, 1842, 2028, 2217, 2882
FokI	GGATG	9 cut(s)	125, 317, 484, 547, 585, 1232, 1394, 2317, 2684
FriOI	GRGCYC	1 cut(s)	2788
Fsp4HI	GCNGC	8 cut(s)	44, 1233, 1580, 1768, 1842, 2028, 2217, 2882
GlaI	GCGC	2 cut(s)	1689, 2885
GluI	GCNGC	8 cut(s)	44, 1233, 1580, 1768, 1842, 2028, 2217, 2882
GsaI	CCCAGC	1 cut(s)	823
GsuI	CTGGAG	3 cut(s)	105, 1310, 2241
HaeII	RGCGCY	2 cut(s)	1691, 2887
HaeIII	GGCC	5 cut(s)	1088, 1160, 2425, 2440, 2757
HapII	CCGG	4 cut(s)	668, 1401, 2402, 2877
HgaI	GACGC	1 cut(s)	1851
HhaI	GCGC	2 cut(s)	1690, 2886
Hin1I	GRCGYC	1 cut(s)	1862
Hin6I	GCGC	2 cut(s)	1688, 2884
HinP1I	GCGC	2 cut(s)	1688, 2884
HincII	GTYRAC	1 cut(s)	1324
HindII	GTYRAC	1 cut(s)	1324
HindIII	AAGCTT	3 cut(s)	50, 1095, 1445
HpaII	CCGG	4 cut(s)	668, 1401, 2402, 2877
HphI	GGTGA	4 cut(s)	1615, 1622, 2203, 2382
Hpy166II	GTNNAC	4 cut(s)	902, 1136, 1324, 1568
Hpy8I	GTNNAC	4 cut(s)	902, 1136, 1324, 1568
HpyCH4IV	ACGT	1 cut(s)	812
HpySE526I	ACGT	1 cut(s)	812
Hsp92I	GRCGYC	1 cut(s)	1862
HspAI	GCGC	2 cut(s)	1688, 2884
Kpn2I	TCCGGA	2 cut(s)	1400, 2401
Kzo9I	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
LmnI	GCTCC	4 cut(s)	598, 880, 2068, 2104
Lsp1109I	GCAGC	7 cut(s)	55, 1219, 1591, 1853, 2014, 2203, 2893
MabI	ACCWGGT	1 cut(s)	226
MaeII	ACGT	1 cut(s)	812
MaeIII	GTNAC	6 cut(s)	357, 1471, 1556, 1984, 2045, 2200
MalI	GATC	8 cut(s)	332, 711, 825, 842, 1131, 1532, 1905, 2748
MboI	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
MflI	RGATCY	4 cut(s)	330, 823, 1903, 2746
MhlI	GDGCHC	3 cut(s)	223, 595, 2788
MlyI	GAGTC	6 cut(s)	169, 1288, 1423, 1553, 2314, 2834
Mph1103I	ATGCAT	1 cut(s)	578
MroI	TCCGGA	2 cut(s)	1400, 2401
MroXI	GAANNNNTTC	1 cut(s)	2188
MseI	TTAA	5 cut(s)	354, 794, 1892, 2169, 2297
MslI	CAYNNNNRTG	2 cut(s)	107, 1464
MspA1I	CMGCKG	7 cut(s)	46, 83, 819, 1156, 1232, 2120, 2216
MspI	CCGG	4 cut(s)	668, 1401, 2402, 2877
MspR9I	CCNGG	4 cut(s)	228, 1572, 2259, 2878
Mva1269I	GAATGC	2 cut(s)	1459, 2730
MvaI	CCWGG	3 cut(s)	228, 1572, 2259
MvnI	CGCG	2 cut(s)	209, 405
NciI	CCSGG	1 cut(s)	2878
NdeII	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
NheI	GCTAGC	1 cut(s)	1732
NlaIV	GGNNCC	6 cut(s)	477, 540, 651, 825, 1485, 2748
NmuCI	GTSAC	2 cut(s)	1984, 2200
NruI	TCGCGA	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	578
NspI	RCATGY	2 cut(s)	938, 2523
NspV	TTCGAA	1 cut(s)	2734
PaeI	GCATGC	1 cut(s)	938
PceI	AGGCCT	1 cut(s)	2757
PctI	GAATGC	2 cut(s)	1459, 2730
PdmI	GAANNNNTTC	1 cut(s)	2188
PfeI	GAWTC	6 cut(s)	1150, 1511, 2514, 2929, 2963, 2993
PflMI	CCANNNNNTGG	1 cut(s)	2624
PfoI	TCCNGGA	1 cut(s)	2257
PkrI	GCNGC	8 cut(s)	45, 1234, 1581, 1769, 1843, 2029, 2218, 2883
PleI	GAGTC	6 cut(s)	168, 1288, 1422, 1552, 2314, 2834
PpsI	GAGTC	6 cut(s)	168, 1288, 1422, 1552, 2314, 2834
PpuMI	RGGWCCY	1 cut(s)	1484
Psp5II	RGGWCCY	1 cut(s)	1484
Psp6I	CCWGG	3 cut(s)	226, 1570, 2257
PspFI	CCCAGC	1 cut(s)	819
PspGI	CCWGG	3 cut(s)	226, 1570, 2257
PspN4I	GGNNCC	6 cut(s)	477, 540, 651, 825, 1485, 2748
PspPI	GGNCC	3 cut(s)	902, 1159, 1484
PspPPI	RGGWCCY	1 cut(s)	1484
PstI	CTGCAG	1 cut(s)	1795
PstNI	CAGNNNCTG	1 cut(s)	1433
PsuI	RGATCY	4 cut(s)	330, 823, 1903, 2746
PvuII	CAGCTG	6 cut(s)	46, 83, 819, 1156, 1232, 2120
RruI	TCGCGA	1 cut(s)	405
RsaI	GTAC	6 cut(s)	195, 267, 610, 1569, 1948, 2586
RsaNI	GTAC	6 cut(s)	194, 266, 609, 1568, 1947, 2585
RseI	CAYNNNNRTG	2 cut(s)	107, 1464
SaqAI	TTAA	5 cut(s)	354, 794, 1892, 2169, 2297
SatI	GCNGC	8 cut(s)	44, 1233, 1580, 1768, 1842, 2028, 2217, 2882
Sau3AI	GATC	8 cut(s)	330, 709, 823, 840, 1129, 1530, 1903, 2746
Sau96I	GGNCC	3 cut(s)	902, 1159, 1484
ScaI	AGTACT	2 cut(s)	610, 2586
SchI	GAGTC	6 cut(s)	169, 1288, 1423, 1553, 2314, 2834
ScrFI	CCNGG	4 cut(s)	228, 1572, 2259, 2878
SduI	GDGCHC	3 cut(s)	223, 595, 2788
SexAI	ACCWGGT	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	1791, 2580
SfuI	TTCGAA	1 cut(s)	2734
SinI	GGWCC	2 cut(s)	902, 1484
SmiMI	CAYNNNNRTG	2 cut(s)	107, 1464
SmlI	CTYRAG	4 cut(s)	2507, 2703, 2804, 2915
SmoI	CTYRAG	4 cut(s)	2507, 2703, 2804, 2915
SphI	GCATGC	1 cut(s)	938
SseBI	AGGCCT	1 cut(s)	2757
SsiI	CCGC	3 cut(s)	209, 1767, 2214
StuI	AGGCCT	1 cut(s)	2757
StyD4I	CCNGG	4 cut(s)	226, 1570, 2257, 2876
StyI	CCWWGG	2 cut(s)	2241, 2899
TaiI	ACGT	1 cut(s)	815
TaqI	TCGA	5 cut(s)	121, 152, 2323, 2361, 2734
TatI	WGTACW	4 cut(s)	193, 265, 608, 2584
TauI	GCSGC	1 cut(s)	1770
TfiI	GAWTC	6 cut(s)	1150, 1511, 2514, 2929, 2963, 2993
Tru1I	TTAA	5 cut(s)	354, 794, 1892, 2169, 2297
Tru9I	TTAA	5 cut(s)	354, 794, 1892, 2169, 2297
TscAI	CASTG	4 cut(s)	114, 595, 1968, 2629
TseFI	GTSAC	2 cut(s)	1984, 2200
TseI	GCWGC	7 cut(s)	43, 1232, 1579, 1841, 2027, 2216, 2881
Tsp45I	GTSAC	2 cut(s)	1984, 2200
TspRI	CASTG	4 cut(s)	114, 595, 1968, 2629
Van91I	CCANNNNNTGG	1 cut(s)	2624
VpaK11BI	GGWCC	2 cut(s)	902, 1484
XagI	CCTNNNNNAGG	1 cut(s)	2062
XapI	RAATTY	8 cut(s)	377, 718, 778, 862, 1307, 1749, 2195, 2310
XbaI	TCTAGA	3 cut(s)	1865, 2788, 2938
XceI	RCATGY	2 cut(s)	938, 2523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2433
XmnI	GAANNNNTTC	1 cut(s)	2188
ZrmI	AGTACT	2 cut(s)	610, 2586
Zsp2I	ATGCAT	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.