Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

64918696 .. 64924727

Gene Structure 6032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGGCTTCCTTGAAGGGTTCTGTACTTGGGATCACTTCTCAGATTTGTGATGGAGAATTTGATCTTGGTTCTTACTGCACTCAAAGGACTATGATTAATGCAGTAAATCTTCTCTTCCTCTTTCTTTTTTGCTTATTTACTCTTATAGCTTCTATAAGGAAGCATTATAGTAGTAGTAGTCCATCCAGAAGGGATAGATTCTCAGTAGTGGTTTCAGTCTGTTGTGCTCTTACTGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGATTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTTCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACACTGAAAGAAGTAATGGAGCGCGGACAAGTTACTCAATCCGGAAGCTATGAGAGTCTCTTGACTGCTGGAACAGCATTTGAGCAACTGGTGAATGCTCATAGAGATGCAGTAACTACATTAGGTCCTTCAAATAATCAAAGCCAAGTAGAACCGGAAAAGACAGATATGATCCGGCATGAGGAGTCTGTAACTAATCTCACTAGATACAGCAGTGAAGGGGACACTTCTGTGAAGGCTTCACCCACAGTGCAACTAACAGAAGATGAAGAAAAAGAGATTGGTGATGTTGGATGGAAGCCCTTCTGGGATTACATTTTTGTTTCCAAGGGAACACTTCTGCTAGCAATAGGCATAATGGCACAGGCTGGTTTTGTTTGTTTTCAGGCTGGTTCAACTTATTGGCTGGCTCTCGCCATTCAAAATCCTAGTATAACTAGTCTTACACTTGTCGGTGTCTACACTGCAATCTCAACACTCAGTGCTGTATTTGTCTATCTGAGGTCAACCTTTGCAGCACATCTGGGACTAAGAGCTTCTAGAACATTTTTTGATGGTTTCACAGATGCCATCTTTAAGGCTCCCATGTTGTTCTTTGACTCAACTCCTGTAGGGAGGATTTTGACACGAGCTTCATCAGATTTAAGTATCTTGGATTTTGACATACCTTTCTCCATTATCTTTGTTGTGTCTGCTGGTATGGAATTGCTGACATGGATTGGAATAATGGCTTCTGTCACATGGCAAGTTCTCATTGTAGCCGTTCTCACCATGGTTGCTTCAAAATATGTTCAGATTCCACCAGAGCCTCTGGCTATTGTGGAGGACAAGAGACCACCATCTTCATGGCCTACAAAGGGAAGGATAGAGCTGCATTCTCTCAAGGCTCTAGAGAAGTGTCAGCTGAAGGCAACAGTCAGCAGTCTACCTAATCTGCTAGATTCATCTGGGAAGCTAGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCATACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGCTGTAGAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

518

Amino Acids

57.19

Weight (kDa)

5.3

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	303 - 429	5.9e-13	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	966, 1432
AccII	CGCG	1 cut(s)	531
AccIII	TCCGGA	1 cut(s)	548
AciI	CCGC	1 cut(s)	531
AclWI	GGATC	3 cut(s)	38, 346, 673
AcsI	RAATTY	2 cut(s)	56, 442
AcuI	CTGAAG	1 cut(s)	1433
AdeI	CACNNNGTG	1 cut(s)	989
AfaI	GTAC	2 cut(s)	24, 274
AfiI	CCNNNNNNNGG	3 cut(s)	361, 688, 1364
AgsI	TTSAA	9 cut(s)	13, 250, 409, 506, 639, 903, 929, 1290, 1485
AhlI	ACTAGT	1 cut(s)	944
AjuI	GAANNNNNNNTTGG	6 cut(s)	48, 80, 771, 803, 1493, 1525
AleI	CACNNNNGTG	1 cut(s)	737
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	3 cut(s)	370, 569, 1333
AlwI	GGATC	3 cut(s)	38, 346, 673
Aor13HI	TCCGGA	1 cut(s)	548
AoxI	GGCC	1 cut(s)	1355
ApeKI	GCWGC	2 cut(s)	1022, 1378
ApoI	RAATTY	2 cut(s)	56, 442
AseI	ATTAAT	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	5 cut(s)	429, 610, 741, 803, 1267
AsuNHI	GCTAGC	1 cut(s)	850
AvaII	GGWCC	1 cut(s)	632
BaeI	ACNNNNGTAYC	2 cut(s)	706, 739
BauI	CACGAG	1 cut(s)	1134
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	1034, 1365
BccI	CCATC	7 cut(s)	44, 190, 442, 795, 1055, 1085, 1354
BceAI	ACGGC	1 cut(s)	1253
BciVI	GTATCC	3 cut(s)	251, 498, 1489
BcoDI	GTCTC	3 cut(s)	370, 569, 1333
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	8 cut(s)	711, 851, 936, 945, 1047, 1397, 1445, 1463
BfmI	CTRYAG	2 cut(s)	1116, 1543
BfuI	GTATCC	3 cut(s)	251, 498, 1489
BisI	GCNGC	2 cut(s)	1023, 1379
BlsI	GCNGC	2 cut(s)	1024, 1380
BmcAI	AGTACT	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	1089
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	604, 1063
BmtI	GCTAGC	1 cut(s)	854
BmuI	ACTGGG	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	478, 1373
BsaI	GGTCTC	2 cut(s)	370, 1333
BsaJI	CCNNGG	2 cut(s)	834, 1278
BsaWI	WCCGGW	2 cut(s)	548, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 688, 1364
Bse1I	ACTGG	2 cut(s)	238, 600
BseAI	TCCGGA	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	834, 1278
BseGI	GGATG	2 cut(s)	182, 806
BseLI	CCNNNNNNNGG	3 cut(s)	361, 688, 1364
BseMII	CTCAG	4 cut(s)	53, 216, 998, 1000
BseNI	ACTGG	2 cut(s)	238, 600
BseRI	GAGGAG	1 cut(s)	704
BseXI	GCAGC	2 cut(s)	1034, 1365
BsgI	GTGCAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	1357
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	3 cut(s)	549, 662, 682
BslFI	GGGAC	3 cut(s)	242, 743, 1047
BslI	CCNNNNNNNGG	3 cut(s)	361, 688, 1364
BsmAI	GTCTC	3 cut(s)	370, 569, 1333
BsmFI	GGGAC	3 cut(s)	242, 743, 1047
BsmI	GAATGC	3 cut(s)	271, 607, 1381
BsnI	GGCC	1 cut(s)	1357
Bso31I	GGTCTC	2 cut(s)	370, 1333
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	30, 61, 351, 373, 678
Bsp19I	CCATGG	1 cut(s)	1278
BspACI	CCGC	1 cut(s)	531
BspANI	GGCC	1 cut(s)	1357
BspCNI	CTCAG	4 cut(s)	52, 215, 999, 999
BspEI	TCCGGA	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	1 cut(s)	1089
BspOI	GCTAGC	1 cut(s)	854
BspPI	GGATC	3 cut(s)	38, 346, 673
BspTNI	GGTCTC	2 cut(s)	370, 1333
BsrI	ACTGG	2 cut(s)	238, 600
BssECI	CCNNGG	2 cut(s)	834, 1278
BssMI	GATC	5 cut(s)	30, 61, 351, 373, 678
BssSI	CACGAG	1 cut(s)	1134
BssT1I	CCWWGG	2 cut(s)	834, 1278
Bst2BI	CACGAG	1 cut(s)	1134
Bst4CI	ACNGT	3 cut(s)	286, 757, 1423
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	2 cut(s)	852, 915
BstDEI	CTNAG	6 cut(s)	39, 202, 299, 986, 1007, 1037
BstDSI	CCRYGG	1 cut(s)	1278
BstF5I	GGATG	2 cut(s)	182, 806
BstFNI	CGCG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	5 cut(s)	33, 64, 354, 376, 681
BstMAI	GTCTC	3 cut(s)	370, 569, 1333
BstMBI	GATC	5 cut(s)	30, 61, 351, 373, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstSFI	CTRYAG	2 cut(s)	1116, 1543
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	2 cut(s)	1034, 1365
BstXI	CCANNNNNNTGG	1 cut(s)	1353
BsuI	GTATCC	3 cut(s)	251, 498, 1489
BsuRI	GGCC	1 cut(s)	1357
BtgI	CCRYGG	1 cut(s)	1278
BtsCI	GGATG	2 cut(s)	182, 806
BtsI	GCAGTG	2 cut(s)	727, 969
BtsIMutI	CAGTG	5 cut(s)	509, 727, 762, 969, 994
Cac8I	GCNNGC	2 cut(s)	852, 915
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	23, 273
CviAII	CATG	7 cut(s)	307, 686, 1093, 1221, 1248, 1279, 1353
CviQI	GTAC	2 cut(s)	23, 273
DdeI	CTNAG	6 cut(s)	39, 202, 299, 986, 1007, 1037
DpnI	GATC	5 cut(s)	32, 63, 353, 375, 680
DpnII	GATC	5 cut(s)	30, 61, 351, 373, 678
DraIII	CACNNNGTG	1 cut(s)	989
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	834, 1278
Eco31I	GGTCTC	2 cut(s)	370, 1333
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	1433
EcoO109I	RGGNCCY	1 cut(s)	632
EcoT14I	CCWWGG	2 cut(s)	834, 1278
ErhI	CCWWGG	2 cut(s)	834, 1278
FaeI	CATG	7 cut(s)	310, 689, 1096, 1224, 1251, 1282, 1356
FaqI	GGGAC	3 cut(s)	242, 743, 1047
FatI	CATG	7 cut(s)	306, 685, 1092, 1220, 1247, 1278, 1352
FblI	GTMKAC	2 cut(s)	966, 1432
Fnu4HI	GCNGC	2 cut(s)	1023, 1379
FokI	GGATG	2 cut(s)	169, 813
Fsp4HI	GCNGC	2 cut(s)	1023, 1379
FspBI	CTAG	8 cut(s)	711, 851, 936, 945, 1047, 1397, 1445, 1463
GlaI	GCGC	1 cut(s)	530
GluI	GCNGC	2 cut(s)	1023, 1379
HaeIII	GGCC	1 cut(s)	1357
HapII	CCGG	3 cut(s)	549, 662, 682
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	7 cut(s)	310, 689, 1096, 1224, 1251, 1282, 1356
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HindIII	AAGCTT	2 cut(s)	428, 1517
HinfI	GANTC	7 cut(s)	198, 494, 562, 692, 1106, 1303, 1448
HpaII	CCGG	3 cut(s)	549, 662, 682
HphI	GGTGA	5 cut(s)	429, 610, 741, 803, 1267
Hpy166II	GTNNAC	3 cut(s)	967, 1014, 1433
Hpy188I	TCNGA	6 cut(s)	42, 264, 448, 1008, 1147, 1302
Hpy188III	TCNNGA	6 cut(s)	186, 491, 549, 568, 1047, 1397
Hpy8I	GTNNAC	3 cut(s)	967, 1014, 1433
HpyAV	CCTTC	9 cut(s)	7, 183, 645, 719, 736, 820, 1362, 1408, 1491
HpyCH4III	ACNGT	3 cut(s)	286, 757, 1423
HpyCH4V	TGCA	8 cut(s)	78, 101, 269, 617, 760, 974, 1022, 1381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	6 cut(s)	39, 202, 299, 986, 1007, 1037
Hsp92II	CATG	7 cut(s)	310, 689, 1096, 1224, 1251, 1282, 1356
HspAI	GCGC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	548
Kzo9I	GATC	5 cut(s)	30, 61, 351, 373, 678
LmnI	GCTCC	3 cut(s)	303, 526, 1093
Lsp1109I	GCAGC	2 cut(s)	1034, 1365
LweI	GCATC	2 cut(s)	604, 1063
MaeI	CTAG	8 cut(s)	711, 851, 936, 945, 1047, 1397, 1445, 1463
MaeIII	GTNAC	4 cut(s)	538, 619, 697, 1243
MalI	GATC	5 cut(s)	32, 63, 353, 375, 680
MboI	GATC	5 cut(s)	30, 61, 351, 373, 678
MboII	GAAGA	6 cut(s)	101, 106, 782, 788, 1341, 1487
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	4 cut(s)	56, 442, 501, 1211
MlyI	GAGTC	3 cut(s)	571, 701, 1100
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	9 cut(s)	128, 270, 328, 682, 1002, 1116, 1324, 1326, 1541
MroI	TCCGGA	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	3 cut(s)	96, 1083, 1151
MslI	CAYNNNNRTG	3 cut(s)	612, 737, 1351
MspA1I	CMGCKG	1 cut(s)	1411
MspI	CCGG	3 cut(s)	549, 662, 682
Mva1269I	GAATGC	3 cut(s)	271, 607, 1381
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	1278
NdeII	GATC	5 cut(s)	30, 61, 351, 373, 678
NheI	GCTAGC	1 cut(s)	850
NlaIII	CATG	7 cut(s)	310, 689, 1096, 1224, 1251, 1282, 1356
NlaIV	GGNNCC	1 cut(s)	1089
NmuCI	GTSAC	1 cut(s)	1243
OliI	CACNNNNGTG	1 cut(s)	737
PctI	GAATGC	3 cut(s)	271, 607, 1381
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	4 cut(s)	198, 494, 1303, 1448
PkrI	GCNGC	2 cut(s)	1024, 1380
PleI	GAGTC	3 cut(s)	570, 700, 1100
PpsI	GAGTC	3 cut(s)	570, 700, 1100
PpuMI	RGGWCCY	1 cut(s)	632
PshBI	ATTAAT	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	632
PspN4I	GGNNCC	1 cut(s)	1089
PspPI	GGNCC	1 cut(s)	632
PspPPI	RGGWCCY	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	1411
RsaI	GTAC	2 cut(s)	24, 274
RsaNI	GTAC	2 cut(s)	23, 273
RseI	CAYNNNNRTG	3 cut(s)	612, 737, 1351
SaqAI	TTAA	3 cut(s)	96, 1083, 1151
SatI	GCNGC	2 cut(s)	1023, 1379
Sau3AI	GATC	5 cut(s)	30, 61, 351, 373, 678
Sau96I	GGNCC	1 cut(s)	632
ScaI	AGTACT	1 cut(s)	274
SchI	GAGTC	3 cut(s)	571, 701, 1100
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	604, 1063
SfcI	CTRYAG	2 cut(s)	1116, 1543
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	3 cut(s)	612, 737, 1351
SmlI	CTYRAG	2 cut(s)	457, 1388
SmoI	CTYRAG	2 cut(s)	457, 1388
SpeI	ACTAGT	1 cut(s)	944
Sse9I	AATT	4 cut(s)	56, 442, 501, 1211
SsiI	CCGC	1 cut(s)	531
SspI	AATATT	1 cut(s)	1532
SspMI	CTAG	8 cut(s)	711, 851, 936, 945, 1047, 1397, 1445, 1463
StyI	CCWWGG	2 cut(s)	834, 1278
TaaI	ACNGT	3 cut(s)	286, 757, 1423
TasI	AATT	4 cut(s)	56, 442, 501, 1211
TatI	WGTACW	2 cut(s)	22, 272
TfiI	GAWTC	4 cut(s)	198, 494, 1303, 1448
Tru1I	TTAA	3 cut(s)	96, 1083, 1151
Tru9I	TTAA	3 cut(s)	96, 1083, 1151
TscAI	CASTG	5 cut(s)	516, 727, 762, 976, 994
TseFI	GTSAC	1 cut(s)	1243
TseI	GCWGC	2 cut(s)	1022, 1378
Tsp45I	GTSAC	1 cut(s)	1243
TspDTI	ATGAA	5 cut(s)	789, 1131, 1341, 1440, 1488
TspRI	CASTG	5 cut(s)	516, 727, 762, 976, 994
VpaK11BI	GGWCC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	96
XapI	RAATTY	2 cut(s)	56, 442
XbaI	TCTAGA	2 cut(s)	1046, 1396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1350
XmiI	GTMKAC	2 cut(s)	966, 1432
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	8 cut(s)	711, 851, 936, 945, 1047, 1397, 1445, 1463
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.