Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

64892486 .. 64893399

Gene Structure 914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG447200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAACATGGACAAATTACTGAATCAGGAACCTTTGAGAATCTCTTGACCGCAGGAACAGTGTTTGAGCAACTTGTTAATGCTCACCGAGATGCAGTGACATCAGGTACTTCAAATTATCAAAGTCAGGGAGCATTCAAGAAGGAAGAAATGGTTGTTCCGGAGGAGTCTTTTCGGATTAACCTAACTGAAGATAGCAGTGAAGGGGATATTTCTGTGAAGGGCGTACCTGGGGTGCAACTAATAGAAGAAGAAGAGAAAGAGACCGGTGATGTTGGATGGAAGCCCTTTTGGGATTATATTTTTGTTTCTAAGGGAATAATTCTTCTATGCTTGGCCATAACAGCACAGTCTTGTTTCTTTGGCCTTCAAGCGGCTTCAACTTATTGGCTTGCTATAGCTATTGAAATTCCAAATATAAAAAGTGGAATGCTCATTGGTGTTTATACTGCAGTTTCAACGTTTAGTGCTATCTTTGTTCATCTAAGGTCATACCTTGCAGCCCTTGTTGGATTGAAAGCTTCTAAAGCATTTTTCTCTGGTTTCACTGATGCTATCTTTAAGGCTCCCATGCTTTTCTTTGACTCAACTCCTGTTGGGCGAATTTTAACACGAGCTTCATCAGATTTAAGTATTTTGGATTTTGACATACCCTTCTCCATTTTCTTTATTGTTGCTGGTGGCATTGAAATGCTGACAACAATTGGAATTATGGCTTCTGTCACATGGCAAGTTCTTATTGTAGCCATTCTCGCCATGGTTGCTGCCAAATATGTTCAGGTGGATTTGAATTTCAGTTTCTTTCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

270

Amino Acids

29.5

Weight (kDa)

4.63

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	141 - 254	1.6e-14	ABC transporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	2 cut(s)	51, 374
AclI	AACGTT	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	3 cut(s)	408, 603, 790
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	109, 228
AfiI	CCNNNNNNNGG	1 cut(s)	373
AgeI	ACCGGT	1 cut(s)	266
AgsI	TTSAA	9 cut(s)	114, 139, 371, 381, 407, 459, 517, 689, 790
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	3 cut(s)	401, 521, 617
AluI	AGCT	3 cut(s)	401, 521, 617
Alw26I	GTCTC	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	336, 364
ApeKI	GCWGC	2 cut(s)	500, 764
ApoI	RAATTY	3 cut(s)	408, 603, 790
AsiGI	ACCGGT	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	77, 281
BalI	TGGCCA	1 cut(s)	338
BauI	CACGAG	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	512, 751
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	257
BfmI	CTRYAG	2 cut(s)	396, 450
BisI	GCNGC	3 cut(s)	375, 501, 765
BlsI	GCNGC	3 cut(s)	376, 502, 766
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	31, 567
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	2 cut(s)	82, 541
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	230, 756
BsaWI	WCCGGW	2 cut(s)	160, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	230, 756
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	512, 751
BshFI	GGCC	2 cut(s)	338, 366
BshTI	ACCGGT	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	161, 267
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	257
BsmI	GAATGC	2 cut(s)	134, 435
BsnI	GGCC	2 cut(s)	338, 366
Bso31I	GGTCTC	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	756
BspACI	CCGC	2 cut(s)	51, 374
BspANI	GGCC	2 cut(s)	338, 366
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	31, 567
BspMAI	CTGCAG	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	230, 756
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	756
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	61, 351
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	312, 485
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 527, 752, 761
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	396, 450
BstV1I	GCAGC	2 cut(s)	512, 751
BsuRI	GGCC	2 cut(s)	338, 366
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	284
BtsI	GCAGTG	2 cut(s)	102, 205
BtsIMutI	CAGTG	4 cut(s)	66, 102, 205, 546
Cac8I	GCNNGC	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	108, 227
CspAI	ACCGGT	1 cut(s)	266
CviAII	CATG	4 cut(s)	8, 571, 726, 757
CviQI	GTAC	2 cut(s)	108, 227
DdeI	CTNAG	2 cut(s)	312, 485
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	756
Eco31I	GGTCTC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	4 cut(s)	11, 574, 729, 760
FatI	CATG	4 cut(s)	7, 570, 725, 756
Fnu4HI	GCNGC	3 cut(s)	375, 501, 765
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	3 cut(s)	375, 501, 765
GluI	GCNGC	3 cut(s)	375, 501, 765
HaeIII	GGCC	2 cut(s)	338, 366
HapII	CCGG	2 cut(s)	161, 267
Hin1II	CATG	4 cut(s)	11, 574, 729, 760
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	4 cut(s)	23, 40, 167, 584
HpaII	CCGG	2 cut(s)	161, 267
HphI	GGTGA	2 cut(s)	77, 281
Hpy188I	TCNGA	2 cut(s)	177, 625
Hpy188III	TCNNGA	4 cut(s)	27, 46, 139, 161
HpyAV	CCTTC	5 cut(s)	136, 197, 214, 377, 664
HpyCH4III	ACNGT	2 cut(s)	61, 351
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	4 cut(s)	95, 238, 452, 500
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 527, 752, 761
HpyF3I	CTNAG	2 cut(s)	312, 485
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	11, 574, 729, 760
Kpn2I	TCCGGA	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	131, 571
Lsp1109I	GCAGC	2 cut(s)	512, 751
LweI	GCATC	2 cut(s)	82, 541
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	2 cut(s)	97, 721
MboII	GAAGA	7 cut(s)	158, 203, 260, 263, 266, 317, 797
MfeI	CAATTG	1 cut(s)	702
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	8 cut(s)	15, 115, 321, 408, 603, 702, 708, 790
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	176, 578
MmeI	TCCRAC	2 cut(s)	256, 490
MnlI	CCTC	1 cut(s)	157
Mox20I	TGGCCA	1 cut(s)	338
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	338
MseI	TTAA	6 cut(s)	78, 180, 561, 608, 629, 811
MslI	CAYNNNNRTG	2 cut(s)	90, 689
Msp20I	TGGCCA	1 cut(s)	338
MspI	CCGG	2 cut(s)	161, 267
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	702
Mva1269I	GAATGC	2 cut(s)	134, 435
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	344, 527, 752, 761
NcoI	CCATGG	1 cut(s)	756
NlaIII	CATG	4 cut(s)	11, 574, 729, 760
NlaIV	GGNNCC	2 cut(s)	31, 567
NmuCI	GTSAC	2 cut(s)	97, 721
PctI	GAATGC	2 cut(s)	134, 435
PfeI	GAWTC	2 cut(s)	23, 40
PinAI	ACCGGT	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	376, 502, 766
PleI	GAGTC	2 cut(s)	175, 578
PpsI	GAGTC	2 cut(s)	175, 578
Psp1406I	AACGTT	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	2 cut(s)	31, 567
PstI	CTGCAG	1 cut(s)	454
RsaI	GTAC	2 cut(s)	109, 228
RsaNI	GTAC	2 cut(s)	108, 227
RseI	CAYNNNNRTG	2 cut(s)	90, 689
SaqAI	TTAA	6 cut(s)	78, 180, 561, 608, 629, 811
SatI	GCNGC	3 cut(s)	375, 501, 765
SchI	GAGTC	2 cut(s)	176, 578
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	82, 541
SfcI	CTRYAG	2 cut(s)	396, 450
SmiMI	CAYNNNNRTG	2 cut(s)	90, 689
Sse9I	AATT	8 cut(s)	15, 115, 321, 408, 603, 702, 708, 790
SsiI	CCGC	2 cut(s)	51, 374
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	2 cut(s)	61, 351
TaiI	ACGT	1 cut(s)	464
TasI	AATT	8 cut(s)	15, 115, 321, 408, 603, 702, 708, 790
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	23, 40
Tru1I	TTAA	6 cut(s)	78, 180, 561, 608, 629, 811
Tru9I	TTAA	6 cut(s)	78, 180, 561, 608, 629, 811
TscAI	CASTG	4 cut(s)	66, 102, 205, 553
TseFI	GTSAC	2 cut(s)	97, 721
TseI	GCWGC	2 cut(s)	500, 764
Tsp45I	GTSAC	2 cut(s)	97, 721
TspDTI	ATGAA	2 cut(s)	470, 609
TspRI	CASTG	4 cut(s)	66, 102, 205, 553
XapI	RAATTY	3 cut(s)	408, 603, 790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.