Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

53732158 .. 53732779

Gene Structure 622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0418200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGAAACGAGACAGTAGTAGTGGCTGAAACTGCGGGGTCGATAAAAGTGGCGGTGGTAGTATGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGGCGCCGCTCCTCTCTGGGAGATTCCACCTTTTCCCTTCCCAGTGGCCACCTTGAGTTTGGAGAGAGCTTTGAGGAGTGTGCAGCAAGGGAACTGAAGGAAGAAACTGATTTAGACATTGGCAAGATAGAATTGCTAACTGTGACCAACAACCTGTTCCTAGATGAAGCCAAACCATCGCAGTACGTGGCTGTTTTCATGAGGGCAGTGCTGGCAGATCCTCGTCAAGAGCCCCAGAATATTGAGCCAAAATTCTGTGATGGTTGGGGATGGTATGAGTGGGACAATCTTCCGAAGCCACTCTTTTGGCCTTTGGAGAACGTGGTTCAGGATGGATTTAACCCTTTTCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

150

Amino Acids

16.8

Weight (kDa)

4.52

Isoelectric Point (pI)

51.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX	PF00293	16 - 136	1.1e-17	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	3 cut(s)	35, 53, 103
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	100
AfaI	GTAC	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	1 cut(s)	165
AluI	AGCT	1 cut(s)	165
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	3 cut(s)	76, 142, 404
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	4 cut(s)	280, 350, 360, 422
BceAI	ACGGC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	103
BisI	GCNGC	2 cut(s)	103, 180
BlsI	GCNGC	2 cut(s)	104, 181
BmiI	GGNNCC	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	283
BsaHI	GRCGYC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	371, 433
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	2 cut(s)	97, 185
BseXI	GCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	3 cut(s)	78, 144, 406
BshNI	GGYRCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	108, 392
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	2 cut(s)	108, 392
BsnI	GGCC	3 cut(s)	78, 144, 406
Bsp1286I	GDGCHC	2 cut(s)	90, 330
Bsp143I	GATC	1 cut(s)	313
BspACI	CCGC	3 cut(s)	35, 53, 103
BspANI	GGCC	3 cut(s)	78, 144, 406
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	99
BsrBI	CCGCTC	1 cut(s)	105
BsrI	ACTGG	1 cut(s)	138
BssMI	GATC	1 cut(s)	313
BssNI	GRCGYC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	16, 238
BstACI	GRCGYC	1 cut(s)	100
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	371, 433
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 308
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	313
BstXI	CCANNNNNNTGG	1 cut(s)	402
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	3 cut(s)	78, 144, 406
BtgZI	GCGATG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	371, 433
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	145, 309
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	295, 450
CviQI	GTAC	1 cut(s)	280
DinI	GGCGCC	1 cut(s)	101
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	330
EgeI	GGCGCC	1 cut(s)	101
EheI	GGCGCC	1 cut(s)	101
FaeI	CATG	2 cut(s)	298, 453
FaiI	YATR	4 cut(s)	64, 296, 372, 451
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	2 cut(s)	108, 392
FatI	CATG	2 cut(s)	294, 449
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	103, 180
FokI	GGATG	2 cut(s)	378, 440
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	103, 180
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	103, 180
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	78, 144, 406
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	298, 453
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	295, 323, 425
HpyAV	CCTTC	2 cut(s)	143, 187
HpyCH4III	ACNGT	2 cut(s)	16, 238
HpyCH4IV	ACGT	3 cut(s)	84, 282, 417
HpyCH4V	TGCA	1 cut(s)	179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 308
HpySE526I	ACGT	3 cut(s)	84, 282, 417
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	298, 453
HspAI	GCGC	1 cut(s)	100
KasI	GGCGCC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	80, 98, 151, 263, 293, 344, 410
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	3 cut(s)	84, 282, 417
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	315
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	209, 377
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	90, 330
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	2 cut(s)	227, 347
MluNI	TGGCCA	1 cut(s)	144
Mly113I	GGCGCC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	68, 118, 163, 291, 327
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	32, 308
NarI	GGCGCC	1 cut(s)	100
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	298, 453
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	238
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	104, 181
PluTI	GGCGCC	1 cut(s)	103
Ppu21I	YACGTR	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	103, 180
Sau3AI	GATC	1 cut(s)	313
SduI	GDGCHC	2 cut(s)	90, 330
SetI	ASST	7 cut(s)	87, 128, 150, 167, 252, 285, 420
SfoI	GGCGCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	227, 347
SsiI	CCGC	3 cut(s)	35, 53, 103
SspDI	GGCGCC	1 cut(s)	99
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	16, 238
TaiI	ACGT	3 cut(s)	87, 285, 420
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	227, 347
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	2 cut(s)	145, 309
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	276, 283
TspRI	CASTG	2 cut(s)	145, 309
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.