Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Reverse (-)

47749183 .. 47749557

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0374800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCCGCTGCTATTGCTTCCATGACTGCTAAACTTGCGACAAGGTTGTCACTTAAGCACAGCGAAGAGCCTGTAGATCTAGGCAATCTTAGGATTCCTGAAAAAGAATTTTTGGCTAGGAACTTTTACCTAGTTGGGCGGCTAAATAGTAGTCGGGCGGTGGCTCTGGATTCTTTCCGCAGTGCTATCAGATCCATGTGGAGGCTAACGGGGACAGTGGAGGTGCAACCCCGTGCAGACCGCTTCTTGTTTACGTTCACTCATGAACGTGATATTATGAGGGTGAAGAAGGGCGGACCATGGGGTTTCCAGCATGCCATATGGTGTTGTTCAACGACTATGATGGATTCTCGGATATATCCTCAGTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

10.12

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	42 - 105	1.8e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AciI	CCGC	6 cut(s)	6, 139, 158, 178, 241, 294
AclWI	GGATC	1 cut(s)	186
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	333
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	296
BccI	CCATC	1 cut(s)	337
BfaI	CTAG	3 cut(s)	80, 117, 131
BfmI	CTRYAG	1 cut(s)	72
BfrI	CTTAAG	1 cut(s)	53
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	6, 9, 140
BlsI	GCNGC	3 cut(s)	7, 10, 141
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	299
BseLI	CCNNNNNNNGG	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	76, 191
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	6 cut(s)	6, 139, 158, 178, 241, 294
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	262
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	60
BspTI	CTTAAG	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	2 cut(s)	76, 191
BssT1I	CCWWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	60
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	89, 363
BstDSI	CCRYGG	1 cut(s)	299
BstKTI	GATC	2 cut(s)	79, 194
BstMBI	GATC	2 cut(s)	76, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 35
BstNSI	RCATGY	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	76, 191
BstYI	RGATCY	2 cut(s)	76, 191
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	187, 222
Cac8I	GCNNGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	296
CviAII	CATG	5 cut(s)	22, 196, 263, 300, 314
CviJI	RGCY	6 cut(s)	5, 70, 116, 142, 164, 205
CviKI_1	RGCY	6 cut(s)	5, 70, 116, 142, 164, 205
DdeI	CTNAG	2 cut(s)	89, 363
DpnI	GATC	2 cut(s)	78, 193
DpnII	GATC	2 cut(s)	76, 191
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	5 cut(s)	25, 199, 266, 303, 317
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	5 cut(s)	21, 195, 262, 299, 313
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	3 cut(s)	6, 9, 140
Fsp4HI	GCNGC	3 cut(s)	6, 9, 140
FspBI	CTAG	3 cut(s)	80, 117, 131
GluI	GCNGC	3 cut(s)	6, 9, 140
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	25, 199, 266, 303, 317
HinfI	GANTC	3 cut(s)	94, 170, 347
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	252, 258
Hpy188I	TCNGA	2 cut(s)	191, 354
Hpy188III	TCNNGA	3 cut(s)	98, 167, 263
Hpy8I	GTNNAC	2 cut(s)	252, 258
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	254, 268
HpyCH4V	TGCA	2 cut(s)	226, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 35
HpyF3I	CTNAG	2 cut(s)	89, 363
HpySE526I	ACGT	2 cut(s)	254, 268
Hsp92II	CATG	5 cut(s)	25, 199, 266, 303, 317
Kzo9I	GATC	2 cut(s)	76, 191
LguI	GCTCTTC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	84, 111, 152, 323
MaeI	CTAG	3 cut(s)	80, 117, 131
MaeII	ACGT	2 cut(s)	254, 268
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	78, 193
MboI	GATC	2 cut(s)	76, 191
MboII	GAAGA	2 cut(s)	77, 298
MflI	RGATCY	2 cut(s)	76, 191
MluCI	AATT	2 cut(s)	107, 370
MnlI	CCTC	4 cut(s)	195, 214, 273, 372
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	53
MwoI	GCNNNNNNNGC	2 cut(s)	14, 35
NcoI	CCATGG	1 cut(s)	299
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	2 cut(s)	76, 191
NlaIII	CATG	5 cut(s)	25, 199, 266, 303, 317
NmuCI	GTSAC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	317
PaeI	GCATGC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	94, 170, 347
PkrI	GCNGC	3 cut(s)	7, 10, 141
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	76, 191
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	6, 9, 140
Sau3AI	GATC	2 cut(s)	76, 191
Sau96I	GGNCC	1 cut(s)	296
SetI	ASST	5 cut(s)	47, 132, 225, 257, 271
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	107, 370
SsiI	CCGC	6 cut(s)	6, 139, 158, 178, 241, 294
SspMI	CTAG	3 cut(s)	80, 117, 131
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	2 cut(s)	257, 271
TasI	AATT	2 cut(s)	107, 370
TauI	GCSGC	2 cut(s)	8, 142
TfiI	GAWTC	3 cut(s)	94, 170, 347
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	2 cut(s)	187, 222
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	187, 222
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	3 cut(s)	80, 117, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.