Rh2AG427200

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
63492875 .. 63497012
4138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG427200.1

Sequence Viewer

Length: 1605 bp
ATGGGAGACCCTGTCCGAGTTATACCAGAAGCTCTTTCAGTAATGATCCAAGTCAAGGATTGTGTCAAGGTTGCTTTAGCAAAGAAAACGGTGATTCTGGTGACTCATCAAGTTGAATTTCTCTCAGAAGTTGATAACATCTTGGTAATGGAGGGCGGAAGAATTACTCAATCCGGAAGCTATGACGGTCTCTTGACAAAAGGAACTGCATTTGAGCAGCTTGTGAATGCTCATAGAGATGCAGTAACAACATTGGACAGCCCAGCCCCAAACTACCAAACCCAAGAATCTGAGAAGGAAGATATGATCCAACCAGAAGAGTCTCAAAGGACTAATCTTGCTGGTGAAACTGAAGGGGATACTTCCATGGCGGGCATTCCTGGGGTTCAGCTAACAGAAGAAGAAGAGAAAGAGATTGGTGATGTTAGCTGGAAGTCCTGTTGGGATTATATTTTTGTTTCCAAGGGAACACTTCTTCTATTCTCAGGGATATCATCACAGTTTTGTTTTTCTATTTTTCTGGCTGCTTCAACTTATTGGCTAGCTCTAGGCATTAAGATTCCTAATATAACCAGTGCTACACTGATTGGAGTTTACACTGCAATTTCTTCACTCTGTGCTGTCTTTGTATTTCTAAGATCATATTCTGCAGCCCATATGGGATTAAAAGCTTCTAGAGCCTTTTTTGAAGGTTTCACCGATGCTATATTTAAAGCTCCCATGTTGTTCTTTGACTCAACCCCTGTTGGGAGGATTTTAACACGAGCTTCATCAGATTTAAGTACTCTAGATTTTGAGATAACCTTCTCCATTATGTTTACTGTTTCGGCTGTTATTCAACTGCTGACAACTATTGCAGTTTTGGCTTCCGTGATATGGGAAGTTCTCATTGTAGCTATTCTCGCAACTGTTGCTGTACAATACGTTCAGAGATATTGTCAAGCCTCTGCAAGGGAACTAACAAGAATCAATGGAACAACCAAAGCTCCTGTTATGAATTACGCAGCTGAAACATCACTCGGAGTGGTCACTATAAGGGCTTTTAAAATGGCCAACAGGTTCTTCGACGACTACCTAAAGCTAGTTGACACTGATGCCAGACTGTTCTTTCATTCTAATGCAACCAGGGAGTGGTTAATATTAAGGACAGAAGCACTTCAGAATTTGACCCTTTACGCCACTGGTTTTCTCCTTGTTTTACTTCCTAAGGGATACATTTCTTCAGGGCTTGTGGGGCTCTCTCTTTCTTACGCCTTAACACTCACAACAACACAAATTTATCTGACTCAATGGTATTGCAACTTAGCAAACAACATAATATCAGTTGAAAGGATAAAACAATTCATGCAGATTTCACCAGAGCCTCCTGCAATTTTGGAGGACAAGAGGCCACCATTTTCATGGCCTCAAAAGGGTAGAATAGAGCTGCATTGTCTGGAGGCTTTAGAAAAGTGTCAGCTCAAGGCAACAGTCAGTAGCCTGCCTAATCTGCTAGGCTCATCTGGGAAGCTGGTGGAGTATGAAGAACCTTCAAAGCTATTGGATACCAACTCCTACTTCTCCAAGCTTGTAGCTGAATATTGGTCCAGTAGCACGACAAACTGA

Protein Analysis

534

Amino Acids

59.09

Weight (kDa)

5.18

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 179 - 423 1.9e-23 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1131
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 2 cut(s) 156, 371
AclWI GGATC 2 cut(s) 40, 301
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 3 cut(s) 116, 1162, 1275
AcuI CTGAAG 3 cut(s) 372, 1142, 1206
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 2 cut(s) 784, 918
AfiI CCNNNNNNNGG 6 cut(s) 55, 747, 876, 951, 1131, 1412
AgsI TTSAA 6 cut(s) 116, 531, 689, 839, 1328, 1533
AjnI CCWGG 2 cut(s) 379, 1124
AjuI GAANNNNNNNTTGG 4 cut(s) 1046, 1078, 1541, 1573
Alw26I GTCTC 2 cut(s) 194, 327
AlwI GGATC 2 cut(s) 40, 301
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 3 cut(s) 1050, 1388, 1403
ApeKI GCWGC 5 cut(s) 217, 524, 650, 1004, 1426
ApoI RAATTY 3 cut(s) 116, 1162, 1275
Asp700I GAANNNNTTC 1 cut(s) 1155
AspS9I GGNCC 1 cut(s) 1584
AsuHPI GGTGA 6 cut(s) 103, 112, 356, 431, 688, 1347
AsuNHI GCTAGC 1 cut(s) 541
AvaII GGWCC 1 cut(s) 1584
AxyI CCTNAGG 1 cut(s) 1206
BalI TGGCCA 1 cut(s) 1052
BanII GRGCYC 1 cut(s) 1239
BauI CACGAG 1 cut(s) 762
BbvI GCAGC 5 cut(s) 229, 511, 662, 1016, 1413
BciT130I CCWGG 2 cut(s) 381, 1126
BciVI GTATCC 3 cut(s) 352, 1205, 1537
BcoDI GTCTC 2 cut(s) 194, 327
BfaI CTAG 6 cut(s) 542, 548, 675, 788, 1082, 1493
BfmI CTRYAG 1 cut(s) 648
BfuI GTATCC 3 cut(s) 352, 1205, 1537
BisI GCNGC 5 cut(s) 218, 525, 651, 1005, 1427
BlsI GCNGC 5 cut(s) 219, 526, 652, 1006, 1428
BmcAI AGTACT 1 cut(s) 784
Bme1390I CCNGG 2 cut(s) 381, 1126
Bme18I GGWCC 1 cut(s) 1584
BmgT120I GGNCC 1 cut(s) 1584
BmrFI CCNGG 2 cut(s) 381, 1126
BmsI GCATC 3 cut(s) 229, 691, 1084
BmtI GCTAGC 1 cut(s) 545
BpmI CTGGAG 1 cut(s) 1457
BpuEI CTTGAG 1 cut(s) 1445
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 366, 380, 462, 1125
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 3 cut(s) 27, 970, 1000
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 747, 876, 951, 1131, 1412
Bse1I ACTGG 3 cut(s) 573, 1186, 1587
Bse21I CCTNAGG 1 cut(s) 1206
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 381, 1126
BseDI CCNNGG 4 cut(s) 366, 380, 462, 1125
BseLI CCNNNNNNNGG 6 cut(s) 55, 747, 876, 951, 1131, 1412
BseMII CTCAG 3 cut(s) 138, 282, 498
BseNI ACTGG 3 cut(s) 573, 1186, 1587
BseXI GCAGC 5 cut(s) 229, 511, 662, 1016, 1413
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 3 cut(s) 1052, 1390, 1405
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 6 cut(s) 55, 747, 876, 951, 1131, 1412
BsmAI GTCTC 2 cut(s) 194, 327
BsmI GAATGC 2 cut(s) 232, 375
BsnI GGCC 3 cut(s) 1052, 1390, 1405
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 1239
Bsp13I TCCGGA 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 3 cut(s) 45, 306, 638
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 156, 371
BspANI GGCC 3 cut(s) 1052, 1390, 1405
BspCNI CTCAG 3 cut(s) 137, 283, 497
BspEI TCCGGA 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 40, 301
BspTNI GGTCTC 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 3 cut(s) 573, 1186, 1587
BssECI CCNNGG 4 cut(s) 366, 380, 462, 1125
BssMI GATC 3 cut(s) 45, 306, 638
BssSI CACGAG 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 366, 462
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 381, 1126
Bst4CI ACNGT 7 cut(s) 91, 188, 501, 823, 910, 1104, 1471
Bst6I CTCTTC 2 cut(s) 312, 399
BstAPI GCANNNNNTGC 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 916
BstC8I GCNNGC 3 cut(s) 373, 543, 1481
BstDEI CTNAG 6 cut(s) 124, 291, 484, 635, 1206, 1303
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 949
BstKTI GATC 3 cut(s) 48, 309, 641
BstMAI GTCTC 2 cut(s) 194, 327
BstMBI GATC 3 cut(s) 45, 306, 638
BstMWI GCNNNNNNNGC 6 cut(s) 677, 863, 902, 911, 1234, 1489
BstNI CCWGG 2 cut(s) 381, 1126
BstSCI CCNGG 2 cut(s) 379, 1124
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 5 cut(s) 229, 511, 662, 1016, 1413
BstXI CCANNNNNNTGG 1 cut(s) 1401
Bsu36I CCTNAGG 1 cut(s) 1206
BsuI GTATCC 3 cut(s) 352, 1205, 1537
BsuRI GGCC 3 cut(s) 1052, 1390, 1405
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 5 cut(s) 580, 581, 597, 1089, 1179
Cac8I GCNNGC 3 cut(s) 373, 543, 1481
Cfr13I GGNCC 1 cut(s) 1584
Csp6I GTAC 2 cut(s) 783, 917
CviAII CATG 4 cut(s) 367, 721, 1345, 1401
CviQI GTAC 2 cut(s) 783, 917
DdeI CTNAG 6 cut(s) 124, 291, 484, 635, 1206, 1303
DpnI GATC 3 cut(s) 47, 308, 640
DpnII GATC 3 cut(s) 45, 306, 638
DraI TTTAAA 2 cut(s) 712, 1045
DraIII CACNNNGTG 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 2 cut(s) 312, 399
EarI CTCTTC 2 cut(s) 312, 399
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 366, 462
Eco24I GRGCYC 1 cut(s) 1239
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 492
Eco47I GGWCC 1 cut(s) 1584
Eco57I CTGAAG 3 cut(s) 372, 1142, 1206
Eco81I CCTNAGG 1 cut(s) 1206
EcoNI CCTNNNNNAGG 1 cut(s) 949
EcoRII CCWGG 2 cut(s) 379, 1124
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 2 cut(s) 366, 462
EcoT38I GRGCYC 1 cut(s) 1239
ErhI CCWWGG 2 cut(s) 366, 462
FaeI CATG 4 cut(s) 370, 724, 1348, 1404
FatI CATG 4 cut(s) 366, 720, 1344, 1400
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 657
Fnu4HI GCNGC 5 cut(s) 218, 525, 651, 1005, 1427
FriOI GRGCYC 1 cut(s) 1239
Fsp4HI GCNGC 5 cut(s) 218, 525, 651, 1005, 1427
FspBI CTAG 6 cut(s) 542, 548, 675, 788, 1082, 1493
GluI GCNGC 5 cut(s) 218, 525, 651, 1005, 1427
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 1 cut(s) 1457
HaeIII GGCC 3 cut(s) 1052, 1390, 1405
HapII CCGG 1 cut(s) 174
Hin1II CATG 4 cut(s) 370, 724, 1348, 1404
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HindIII AAGCTT 2 cut(s) 669, 1565
HinfI GANTC 8 cut(s) 94, 103, 287, 320, 559, 734, 966, 1285
HpaII CCGG 1 cut(s) 174
HphI GGTGA 6 cut(s) 103, 112, 356, 431, 688, 1347
Hpy166II GTNNAC 3 cut(s) 595, 819, 1087
Hpy188I TCNGA 8 cut(s) 17, 127, 292, 775, 930, 1022, 1161, 1284
Hpy188III TCNNGA 5 cut(s) 174, 193, 675, 788, 1436
Hpy8I GTNNAC 3 cut(s) 595, 819, 1087
Hpy99I CGWCG 1 cut(s) 1070
HpyAV CCTTC 5 cut(s) 289, 347, 683, 814, 1539
HpyCH4III ACNGT 7 cut(s) 91, 188, 501, 823, 910, 1104, 1471
HpyCH4IV ACGT 1 cut(s) 924
HpyF10VI GCNNNNNNNGC 6 cut(s) 677, 863, 902, 911, 1234, 1489
HpyF3I CTNAG 6 cut(s) 124, 291, 484, 635, 1206, 1303
HpySE526I ACGT 1 cut(s) 924
Hsp92II CATG 4 cut(s) 370, 724, 1348, 1404
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 3 cut(s) 45, 306, 638
LmnI GCTCC 2 cut(s) 721, 991
Lsp1109I GCAGC 5 cut(s) 229, 511, 662, 1016, 1413
LweI GCATC 3 cut(s) 229, 691, 1084
MaeI CTAG 6 cut(s) 542, 548, 675, 788, 1082, 1493
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 100, 244, 1027
MalI GATC 3 cut(s) 47, 308, 640
MboI GATC 3 cut(s) 45, 306, 638
MhlI GDGCHC 1 cut(s) 1239
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 8 cut(s) 116, 162, 603, 997, 1162, 1275, 1340, 1371
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 4 cut(s) 97, 329, 728, 1279
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 145, 744, 955, 1372, 1374, 1380, 1416, 1432
Mox20I TGGCCA 1 cut(s) 1052
MroI TCCGGA 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 1155
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 9 cut(s) 555, 665, 711, 758, 779, 1044, 1136, 1142, 1256
MslI CAYNNNNRTG 3 cut(s) 237, 1116, 1399
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 1 cut(s) 1007
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 381, 1126
Mva1269I GAATGC 2 cut(s) 232, 375
MvaI CCWGG 2 cut(s) 381, 1126
MwoI GCNNNNNNNGC 6 cut(s) 677, 863, 902, 911, 1234, 1489
NcoI CCATGG 1 cut(s) 366
NdeI CATATG 1 cut(s) 657
NdeII GATC 3 cut(s) 45, 306, 638
NheI GCTAGC 1 cut(s) 541
NlaIII CATG 4 cut(s) 370, 724, 1348, 1404
NmuCI GTSAC 2 cut(s) 100, 1027
PctI GAATGC 2 cut(s) 232, 375
PdmI GAANNNNTTC 1 cut(s) 1155
PfeI GAWTC 4 cut(s) 94, 287, 559, 966
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 1131
PkrI GCNGC 5 cut(s) 219, 526, 652, 1006, 1428
PleI GAGTC 4 cut(s) 97, 328, 728, 1279
PpsI GAGTC 4 cut(s) 97, 328, 728, 1279
Psp6I CCWGG 2 cut(s) 379, 1124
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 2 cut(s) 379, 1124
PspPI GGNCC 1 cut(s) 1584
PsrI GAACNNNNNNTAC 2 cut(s) 909, 941
PstI CTGCAG 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 1007
RsaI GTAC 2 cut(s) 784, 918
RsaNI GTAC 2 cut(s) 783, 917
RseI CAYNNNNRTG 3 cut(s) 237, 1116, 1399
SaqAI TTAA 9 cut(s) 555, 665, 711, 758, 779, 1044, 1136, 1142, 1256
SatI GCNGC 5 cut(s) 218, 525, 651, 1005, 1427
Sau3AI GATC 3 cut(s) 45, 306, 638
Sau96I GGNCC 1 cut(s) 1584
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 4 cut(s) 97, 329, 728, 1279
ScrFI CCNGG 2 cut(s) 381, 1126
SduI GDGCHC 1 cut(s) 1239
SfaNI GCATC 3 cut(s) 229, 691, 1084
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 1 cut(s) 1584
SmiMI CAYNNNNRTG 3 cut(s) 237, 1116, 1399
SmlI CTYRAG 1 cut(s) 1460
SmoI CTYRAG 1 cut(s) 1460
Sse9I AATT 8 cut(s) 116, 162, 603, 997, 1162, 1275, 1340, 1371
SsiI CCGC 2 cut(s) 156, 371
SspI AATATT 2 cut(s) 1140, 1580
SspMI CTAG 6 cut(s) 542, 548, 675, 788, 1082, 1493
StyD4I CCNGG 2 cut(s) 379, 1124
StyI CCWWGG 2 cut(s) 366, 462
TaaI ACNGT 7 cut(s) 91, 188, 501, 823, 910, 1104, 1471
TaiI ACGT 1 cut(s) 927
TaqI TCGA 1 cut(s) 1065
TasI AATT 8 cut(s) 116, 162, 603, 997, 1162, 1275, 1340, 1371
TatI WGTACW 2 cut(s) 782, 916
TfiI GAWTC 4 cut(s) 94, 287, 559, 966
Tru1I TTAA 9 cut(s) 555, 665, 711, 758, 779, 1044, 1136, 1142, 1256
Tru9I TTAA 9 cut(s) 555, 665, 711, 758, 779, 1044, 1136, 1142, 1256
TscAI CASTG 5 cut(s) 580, 588, 604, 1096, 1186
TseFI GTSAC 2 cut(s) 100, 1027
TseI GCWGC 5 cut(s) 217, 524, 650, 1004, 1426
Tsp45I GTSAC 2 cut(s) 100, 1027
TspDTI ATGAA 6 cut(s) 759, 1010, 1100, 1333, 1389, 1536
TspGWI ACGGA 1 cut(s) 859
TspRI CASTG 5 cut(s) 580, 588, 604, 1096, 1186
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 1131
VpaK11BI GGWCC 1 cut(s) 1584
XagI CCTNNNNNAGG 1 cut(s) 949
XapI RAATTY 3 cut(s) 116, 1162, 1275
XbaI TCTAGA 2 cut(s) 674, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 1398
XmnI GAANNNNTTC 1 cut(s) 1155
XspI CTAG 6 cut(s) 542, 548, 675, 788, 1082, 1493
ZrmI AGTACT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.