Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001001

Physical Location & Seq

Genomic Coordinates Forward (+)

47785014 .. 47792210

Gene Structure 7197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0374900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGTTGGAGAAAGAGTCGGGGTTTTTCTTCAACATGAAGTACTTTGAGGAGTGTGTTACTAATGGTGACTGGGATGAGGTGGAGAATTATCTGTCCGGGTTTACTAAGCTTGATGAAAATGAATACTCCATGAAGATTTTCTTTGAGATTCGGAAACAAAGATACCTTGAGGCTCTTGACAGGCACGACCATACTAAAGCTGTTGAGATTCTTCAGAAGGATTTGAAACTGTTCTCTGGACATAACGAAGGGATTTATAAAGAATTAGCGCTGCTTCTGACGTTTGAGAATTTCAGGGAGAATGATCAACTATCAAAACAAGGAAATACTAACTTTGCGAGGGCAAATATCCTGGATGTAGTAAAAGAGTTAATTGAGTTAAATCCAGTCTTCCATGATAAGCTTCAGTACCCCAGCTCTAAGAAATCAAGGCTGAAGGGCCTTATAAATCAAAGTTTAAATTGGCAGCACTACCTTTGCACAAATTCTAAGCAAGACCCTGACATTAAAACTCTATTCCATGACCATTCTTGTGGGCCAATGGCTTTCAATACATCCCCTGTAACTAAACCTTTAAAGCGCTCCCTACCTAAAGCAGGTCGCTTCCCACCCAAAGGCGGTCGTGGTCCATCTCAGCCAGCAGCAGCACAACATACAGCATCTCTTGCTGGATGGATAGCTAACCCGTCCTCTGTGTCACACCAAATGGTTACTGCAGGACCAATTGGTCTAACTGCTCCCAATTATGCACGTGCTGAACATGTGTTCAAGAGATCAAGAGCTTCTGGGGTATTAGATGAGGTCAATAAGATGCCACTTGATGTGCTTCCAGTCACATTTCCTGGCCACAGCACCCACACACTTTACGCTTCTGGGGAGTTGCCCAAGATTGTAATTGCCAACTTTAGTCAGGGTTCTGCTGTCATGAGCATGGATTTTCATCCACAGCAACAGTCTTTGCTTCTTGTGGGAACAAACATTGGTGATATAACTGTTTGGGAGGTAGGCAGCAAGCTGAGGCTTCTTTCTCGGAGTTTCAATATTTGGGATGTTGCTGCATGCTCAGCTACTTTGCAGGTATCTTTGGTCCATGCATCCACTGCATCAGTAAATCGTGTGATCTGGAGTCCTGATGGTTTCTTTATAGGTGTTGCATATTCCATGCATCTAGTGCACGTATATTCCTATCATGGCAGGGATGATTTGCGTGACCACTTGGAGATTGCTGCACATGTGGGTAATGTTACTGATCTTGCTTTCTCTCACCTGAACAAACAATTATGCATCACAAGTTGTGGAGAGGACAAGATTATTAAGGTCTGGGATGGTGCAACTGGTGAGAAGCTGTATACTTTCGAAGGTCACGAGGCACCAGTTTATTCTGTGTGTACACACAGGAAGGAAAACATTCCGTTCATCTTCTCAACAGCTTTTGATGGGAAAATCAAGGCATGGGTTTATTATGAGAGGGGTCCAGTTGTTGAATATGATGCTCCAGGCCATGCATGCATAAAAATGGCCTATAGTACTGATGGAAAAAGGCTATTCTCATGTGGAACAAGCAAACAAAGGGAGTCATACCTTCTGGAATGGAATGCCGAAGAGGGGGAAGTTAAGCGAGTTTATAATGGGCTTGCGAAGTGGACAGTGGGGATTGTGCAATTTGATACAACAAAAAACCGATTCTTGGTTGCTGGTGATGATTTCCATATAAAGTTTTGGGAAATGGACAATGTGGACCTGTTGGACTCCATTGATGCCGGTGGTGGATTACCGGCGTCTCCTTGTGTACGATTTAACAAGGACGGAATCTTGTTAGCTGTTTCAACAAATGATAATGGTATTAAAGTACTTGCAAATGCCAATGGCATTGAAAGTTTGCGTTCCATTGGGAATTGTGCAATTGATGCCTATAGGATCACTTCTGGAACCCCTGTGAAGGGACCAGTAGTTCACACATTTGGTGCTTCCAGTTCTCCCGGAACAAATAATGGGATTGCAGATAGAAATGCACTGATGTCTTTGGTGGTTAACCCCGTAAGTGTTGTGCATAACTGTATATCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

689

Amino Acids

76.43

Weight (kDa)

6.52

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR1-like_2nd	PF21889	11 - 135	4.3e-53	TPR1-like, CTLH-containing domain
zf_topless	PF21359	138 - 178	4e-20	TOPLESS, zinc finger domain
Beta-prop_WDR3_2nd	PF25172	306 - 522	2.6e-09	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	346 - 462	3.7e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	346 - 523	8.6e-18	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	347 - 520	4.6e-10	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	347 - 617	9.6e-09	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	365 - 576	2.1e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	368 - 623	1.6e-22	THOC3 beta-propeller domain
WDR55	PF24796	369 - 496	3.2e-06	WDR55
WD40_WDHD1_1st	PF24817	384 - 487	5.5e-10	WDHD1 first WD40 domain
WD40_Prp19	PF24814	428 - 490	6e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250 AT3G21250
fragaria_vesca	FvH4_6g33070 FvH4_6g33070 FvH4_6g33070 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260 FvH4_6g37260
malus_domestica	MD09G1195100.v1.1 MD14G1118300.v1.1 MD17G1175700.v1.1 MD17G1175800.v1.1
prunus_persica	Prupe.3G051600_v2.0.a1 Prupe.3G051800_v2.0.a1 Prupe.3G051800_v2.0.a1
pyrus_communis	pycom09g11210
rosa_chinensis	RchiOBHm_Chr2g0142721 RchiOBHm_Chr2g0142761 RchiOBHm_Chr2g0142771 RchiOBHm_Chr2g0150061
rosa_laevigata	RLG00000019980 RLG00000019982 RLG00000019984
rosa_multiflora	Rmu_co8521907.1_g000001 Rmu_sc0004112.1_g000013 Rmu_sc0004610.1_g000003
rosa_roxburghii	Rroxscaffold_2G00097480 Rroxscaffold_2G00102330 Rroxscaffold_2G00102350 Rroxscaffold_2G00102380 Rroxscaffold_2G00103380
rosa_rugosa	Rorug02G0374800 Rorug02G0374900 Rorug02G0375000 Rorug02G0375100 Rorug02G0418200
rosa_samantha	Rh1DG425700 Rh2AG427200 Rh2AG427900 Rh2AG428000 Rh2AG477500 Rh2BG437100 Rh2BG437400 Rh2BG437600 Rh2CG463300 Rh2DG446800 Rh2DG447100 Rh2DG447200 Rh2DG447300 Rh2DG447400 Rh2DG498700 Rh7DG155300
rosa_wichuraiana	Rw2G035000 Rw2G035010 Rw2G035020 Rw2G038950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	258, 446, 1626
AasI	GACNNNNNNGTC	1 cut(s)	726
Acc36I	ACCTGC	2 cut(s)	587, 1066
AccB1I	GGYRCC	1 cut(s)	1369
AccI	GTMKAC	1 cut(s)	1349
AciI	CCGC	1 cut(s)	618
AclWI	GGATC	1 cut(s)	1925
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	2 cut(s)	289, 484
AcuI	CTGAAG	3 cut(s)	197, 389, 455
AcvI	CACGTG	1 cut(s)	752
AcyI	GRCGYC	1 cut(s)	1778
AfaI	GTAC	6 cut(s)	41, 410, 1390, 1528, 1791, 1851
AfeI	AGCGCT	2 cut(s)	270, 581
AfiI	CCNNNNNNNGG	7 cut(s)	596, 614, 617, 1605, 1687, 1939, 1940
AflIII	ACRYGT	2 cut(s)	760, 1231
AgsI	TTSAA	8 cut(s)	31, 226, 550, 769, 1039, 1484, 1827, 1874
AjnI	CCWGG	3 cut(s)	351, 841, 1495
AloI	GAACNNNNNNTCC	2 cut(s)	1935, 1967
Alw21I	GWGCWC	1 cut(s)	1176
Alw26I	GTCTC	1 cut(s)	1785
Alw44I	GTGCAC	1 cut(s)	1172
AlwI	GGATC	1 cut(s)	1925
Aor51HI	AGCGCT	2 cut(s)	270, 581
AoxI	GGCC	5 cut(s)	439, 536, 844, 1498, 1518
ApaLI	GTGCAC	1 cut(s)	1172
ApeKI	GCWGC	7 cut(s)	271, 466, 641, 644, 1008, 1055, 1226
ApoI	RAATTY	2 cut(s)	289, 484
Asp700I	GAANNNNTTC	3 cut(s)	137, 230, 1407
AspLEI	GCGC	2 cut(s)	271, 582
AspS9I	GGNCC	8 cut(s)	439, 536, 626, 719, 1087, 1472, 1738, 1943
AsuC2I	CCSGG	2 cut(s)	97, 1980
AsuHPI	GGTGA	5 cut(s)	77, 995, 1256, 1349, 1709
AsuII	TTCGAA	1 cut(s)	1356
AvaII	GGWCC	6 cut(s)	626, 719, 1087, 1472, 1738, 1943
BaeGI	GKGCMC	1 cut(s)	1176
BalI	TGGCCA	1 cut(s)	846
BanI	GGYRCC	1 cut(s)	1369
BauI	CACGAG	1 cut(s)	1364
BbrPI	CACGTG	1 cut(s)	752
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	1176
BbvCI	CCTCAGC	1 cut(s)	1016
BbvI	GCAGC	7 cut(s)	258, 478, 653, 656, 1020, 1042, 1213
BccI	CCATC	6 cut(s)	637, 666, 1127, 1319, 1430, 1526
BciT130I	CCWGG	3 cut(s)	353, 843, 1497
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	97, 1980
BcoDI	GTCTC	1 cut(s)	1785
BfaI	CTAG	1 cut(s)	1169
BfmI	CTRYAG	3 cut(s)	714, 1522, 1912
BfoI	RGCGCY	2 cut(s)	272, 583
BfuAI	ACCTGC	2 cut(s)	587, 1066
BisI	GCNGC	7 cut(s)	272, 467, 642, 645, 1009, 1056, 1227
BlpI	GCTNAGC	1 cut(s)	1063
BlsI	GCNGC	7 cut(s)	273, 468, 643, 646, 1010, 1057, 1228
BmcAI	AGTACT	3 cut(s)	41, 1528, 1851
Bme1390I	CCNGG	5 cut(s)	97, 353, 843, 1497, 1980
Bme18I	GGWCC	6 cut(s)	626, 719, 1087, 1472, 1738, 1943
BmgT120I	GGNCC	8 cut(s)	439, 536, 626, 719, 1087, 1472, 1738, 1943
BmiI	GGNNCC	4 cut(s)	1371, 1473, 1930, 1944
BmrFI	CCNGG	5 cut(s)	97, 353, 843, 1497, 1980
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	9 cut(s)	668, 801, 1103, 1112, 1174, 1293, 1480, 1747, 1897
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	2 cut(s)	1144, 1479
Bpu10I	CCTNAGC	1 cut(s)	1016
Bpu1102I	GCTNAGC	1 cut(s)	1063
Bpu14I	TTCGAA	1 cut(s)	1356
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	97, 1980
BsaAI	YACGTR	2 cut(s)	752, 1177
BsaBI	GATNNNNATC	1 cut(s)	939
BsaHI	GRCGYC	1 cut(s)	1778
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	7 cut(s)	596, 614, 617, 1605, 1687, 1939, 1940
Bse118I	RCCGGY	2 cut(s)	1760, 1774
Bse1I	ACTGG	8 cut(s)	74, 386, 830, 1339, 1373, 1475, 1946, 1971
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	3 cut(s)	353, 843, 1497
BseGI	GGATG	9 cut(s)	79, 361, 554, 677, 940, 1054, 1094, 1204, 1330
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	7 cut(s)	596, 614, 617, 1605, 1687, 1939, 1940
BseMII	CTCAG	3 cut(s)	647, 1007, 1077
BseNI	ACTGG	8 cut(s)	74, 386, 830, 1339, 1373, 1475, 1946, 1971
BseRI	GAGGAG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	7 cut(s)	258, 478, 653, 656, 1020, 1042, 1213
BseYI	CCCAGC	1 cut(s)	413
BsgI	GTGCAG	1 cut(s)	1212
Bsh1285I	CGRYCG	1 cut(s)	622
BshFI	GGCC	5 cut(s)	441, 538, 846, 1500, 1520
BshNI	GGYRCC	1 cut(s)	1369
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	1176
BsiSI	CCGG	4 cut(s)	96, 1761, 1775, 1980
BslFI	GGGAC	1 cut(s)	1956
BslI	CCNNNNNNNGG	7 cut(s)	596, 614, 617, 1605, 1687, 1939, 1940
BsmAI	GTCTC	1 cut(s)	1785
BsmBI	CGTCTC	1 cut(s)	1785
BsmFI	GGGAC	1 cut(s)	1956
BsmI	GAATGC	1 cut(s)	1600
BsnI	GGCC	5 cut(s)	441, 538, 846, 1500, 1520
Bsp119I	TTCGAA	1 cut(s)	1356
Bsp1286I	GDGCHC	1 cut(s)	1176
Bsp1407I	TGTACA	1 cut(s)	1388
Bsp143I	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
Bsp1720I	GCTNAGC	1 cut(s)	1063
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	5 cut(s)	441, 538, 846, 1500, 1520
BspCNI	CTCAG	3 cut(s)	646, 1008, 1076
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	4 cut(s)	1371, 1473, 1930, 1944
BspMAI	CTGCAG	1 cut(s)	718
BspMI	ACCTGC	2 cut(s)	587, 1066
BspPI	GGATC	1 cut(s)	1925
BspT104I	TTCGAA	1 cut(s)	1356
BspT107I	GGYRCC	1 cut(s)	1369
BsrFI	RCCGGY	2 cut(s)	1760, 1774
BsrGI	TGTACA	1 cut(s)	1388
BsrI	ACTGG	8 cut(s)	74, 386, 830, 1339, 1373, 1475, 1946, 1971
BssAI	RCCGGY	2 cut(s)	1760, 1774
BssMI	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
BssNAI	GTATAC	1 cut(s)	1350
BssNI	GRCGYC	1 cut(s)	1778
BssSI	CACGAG	1 cut(s)	1364
Bst1107I	GTATAC	1 cut(s)	1350
Bst2BI	CACGAG	1 cut(s)	1364
Bst2UI	CCWGG	3 cut(s)	353, 843, 1497
Bst4CI	ACNGT	5 cut(s)	231, 954, 994, 1648, 2057
Bst6I	CTCTTC	1 cut(s)	1596
BstACI	GRCGYC	1 cut(s)	1778
BstAPI	GCANNNNNTGC	4 cut(s)	665, 1100, 1171, 1907
BstAUI	TGTACA	1 cut(s)	1388
BstBAI	YACGTR	2 cut(s)	752, 1177
BstBI	TTCGAA	1 cut(s)	1356
BstC8I	GCNNGC	5 cut(s)	639, 1013, 1060, 1507, 1635
BstDEI	CTNAG	6 cut(s)	105, 420, 489, 633, 1016, 1063
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	9 cut(s)	79, 361, 554, 677, 940, 1054, 1094, 1204, 1330
BstH2I	RGCGCY	2 cut(s)	272, 583
BstHHI	GCGC	2 cut(s)	271, 582
BstKTI	GATC	5 cut(s)	307, 776, 1122, 1252, 1920
BstMAI	GTCTC	1 cut(s)	1785
BstMBI	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	6 cut(s)	665, 1064, 1100, 1171, 1506, 1907
BstNI	CCWGG	3 cut(s)	353, 843, 1497
BstNSI	RCATGY	4 cut(s)	764, 1062, 1235, 1509
BstSCI	CCNGG	5 cut(s)	95, 351, 841, 1495, 1978
BstSFI	CTRYAG	3 cut(s)	714, 1522, 1912
BstSLI	GKGCMC	1 cut(s)	1176
BstV1I	GCAGC	7 cut(s)	258, 478, 653, 656, 1020, 1042, 1213
BstV2I	GAAGAC	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	1350
BsuRI	GGCC	5 cut(s)	441, 538, 846, 1500, 1520
BtsCI	GGATG	9 cut(s)	79, 361, 554, 677, 940, 1054, 1094, 1204, 1330
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	3 cut(s)	1098, 1653, 2012
BveI	ACCTGC	2 cut(s)	587, 1066
Cac8I	GCNNGC	5 cut(s)	639, 1013, 1060, 1507, 1635
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	2 cut(s)	271, 582
Cfr10I	RCCGGY	2 cut(s)	1760, 1774
Cfr13I	GGNCC	8 cut(s)	439, 536, 626, 719, 1087, 1472, 1738, 1943
CseI	GACGC	1 cut(s)	1767
Csp6I	GTAC	6 cut(s)	40, 409, 1389, 1527, 1790, 1850
CviQI	GTAC	6 cut(s)	40, 409, 1389, 1527, 1790, 1850
DdeI	CTNAG	6 cut(s)	105, 420, 489, 633, 1016, 1063
DpnI	GATC	5 cut(s)	306, 775, 1121, 1251, 1919
DpnII	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
DraI	TTTAAA	2 cut(s)	459, 576
DrdI	GACNNNNNNGTC	1 cut(s)	726
DseDI	GACNNNNNNGTC	1 cut(s)	726
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	1 cut(s)	1596
EarI	CTCTTC	1 cut(s)	1596
Eco47I	GGWCC	6 cut(s)	626, 719, 1087, 1472, 1738, 1943
Eco47III	AGCGCT	2 cut(s)	270, 581
Eco57I	CTGAAG	3 cut(s)	197, 389, 455
Eco72I	CACGTG	1 cut(s)	752
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRII	CCWGG	3 cut(s)	351, 841, 1495
EcoT22I	ATGCAT	5 cut(s)	1096, 1167, 1286, 1507, 1511
Esp3I	CGTCTC	1 cut(s)	1785
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	1956
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	1349
Fnu4HI	GCNGC	7 cut(s)	272, 467, 642, 645, 1009, 1056, 1227
FokI	GGATG	9 cut(s)	86, 368, 541, 684, 927, 1061, 1081, 1211, 1337
Fsp4HI	GCNGC	7 cut(s)	272, 467, 642, 645, 1009, 1056, 1227
FspBI	CTAG	1 cut(s)	1169
GlaI	GCGC	2 cut(s)	270, 581
GluI	GCNGC	7 cut(s)	272, 467, 642, 645, 1009, 1056, 1227
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	1144, 1479
HaeII	RGCGCY	2 cut(s)	272, 583
HaeIII	GGCC	5 cut(s)	441, 538, 846, 1500, 1520
HapII	CCGG	4 cut(s)	96, 1761, 1775, 1980
HgaI	GACGC	1 cut(s)	1767
HhaI	GCGC	2 cut(s)	271, 582
Hin1I	GRCGYC	1 cut(s)	1778
Hin6I	GCGC	2 cut(s)	269, 580
HinP1I	GCGC	2 cut(s)	269, 580
HincII	GTYRAC	1 cut(s)	2032
HindII	GTYRAC	1 cut(s)	2032
HindIII	AAGCTT	2 cut(s)	107, 401
HinfI	GANTC	8 cut(s)	14, 148, 208, 1126, 1574, 1683, 1748, 1809
HpaI	GTTAAC	1 cut(s)	2032
HpaII	CCGG	4 cut(s)	96, 1761, 1775, 1980
HphI	GGTGA	5 cut(s)	77, 995, 1256, 1349, 1709
Hpy188I	TCNGA	5 cut(s)	153, 216, 279, 1032, 2065
HpyAV	CCTTC	7 cut(s)	211, 242, 430, 1352, 1393, 1592, 1933
HpyCH4III	ACNGT	5 cut(s)	231, 954, 994, 1648, 2057
HpyCH4IV	ACGT	3 cut(s)	281, 751, 1176
HpyF10VI	GCNNNNNNNGC	6 cut(s)	665, 1064, 1100, 1171, 1506, 1907
HpyF3I	CTNAG	6 cut(s)	105, 420, 489, 633, 1016, 1063
HpySE526I	ACGT	3 cut(s)	281, 751, 1176
Hsp92I	GRCGYC	1 cut(s)	1778
HspAI	GCGC	2 cut(s)	269, 580
Ksp22I	TGATCA	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	2032
Kzo9I	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
LmnI	GCTCC	3 cut(s)	587, 742, 1498
Lsp1109I	GCAGC	7 cut(s)	258, 478, 653, 656, 1020, 1042, 1213
LweI	GCATC	9 cut(s)	668, 801, 1103, 1112, 1174, 1293, 1480, 1747, 1897
MaeI	CTAG	1 cut(s)	1169
MaeII	ACGT	3 cut(s)	281, 751, 1176
MaeIII	GTNAC	9 cut(s)	55, 65, 562, 696, 709, 832, 1208, 1243, 1361
MalI	GATC	5 cut(s)	306, 775, 1121, 1251, 1919
MboI	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
MboII	GAAGA	6 cut(s)	19, 145, 203, 382, 1411, 1613
MfeI	CAATTG	2 cut(s)	723, 1902
MhlI	GDGCHC	1 cut(s)	1176
MlsI	TGGCCA	1 cut(s)	846
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	4 cut(s)	23, 1135, 1583, 1742
MmeI	TCCRAC	1 cut(s)	1725
Mox20I	TGGCCA	1 cut(s)	846
Mph1103I	ATGCAT	5 cut(s)	1096, 1167, 1286, 1507, 1511
MroXI	GAANNNNTTC	3 cut(s)	137, 230, 1407
MscI	TGGCCA	1 cut(s)	846
MslI	CAYNNNNRTG	3 cut(s)	531, 929, 1514
Msp20I	TGGCCA	1 cut(s)	846
MspI	CCGG	4 cut(s)	96, 1761, 1775, 1980
MspR9I	CCNGG	5 cut(s)	97, 353, 843, 1497, 1980
MunI	CAATTG	2 cut(s)	723, 1902
Mva1269I	GAATGC	1 cut(s)	1600
MvaI	CCWGG	3 cut(s)	353, 843, 1497
MwoI	GCNNNNNNNGC	6 cut(s)	665, 1064, 1100, 1171, 1506, 1907
NciI	CCSGG	2 cut(s)	97, 1980
NdeII	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
NlaIV	GGNNCC	4 cut(s)	1371, 1473, 1930, 1944
NmuCI	GTSAC	5 cut(s)	65, 696, 832, 1208, 1361
NsiI	ATGCAT	5 cut(s)	1096, 1167, 1286, 1507, 1511
NspI	RCATGY	4 cut(s)	764, 1062, 1235, 1509
NspV	TTCGAA	1 cut(s)	1356
PaeI	GCATGC	2 cut(s)	1062, 1509
PagI	TCATGA	1 cut(s)	924
PciI	ACATGT	2 cut(s)	760, 1231
PcsI	WCGNNNNNNNCGW	1 cut(s)	1362
PctI	GAATGC	1 cut(s)	1600
PdmI	GAANNNNTTC	3 cut(s)	137, 230, 1407
PfeI	GAWTC	4 cut(s)	148, 208, 1683, 1809
PfoI	TCCNGGA	2 cut(s)	351, 1978
PkrI	GCNGC	7 cut(s)	273, 468, 643, 646, 1010, 1057, 1228
PleI	GAGTC	4 cut(s)	22, 1134, 1582, 1742
PmaCI	CACGTG	1 cut(s)	752
PmlI	CACGTG	1 cut(s)	752
PpsI	GAGTC	4 cut(s)	22, 1134, 1582, 1742
Ppu21I	YACGTR	2 cut(s)	752, 1177
PscI	ACATGT	2 cut(s)	760, 1231
PsiI	TTATAA	3 cut(s)	258, 446, 1626
Psp6I	CCWGG	3 cut(s)	351, 841, 1495
PspCI	CACGTG	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	351, 841, 1495
PspN4I	GGNNCC	4 cut(s)	1371, 1473, 1930, 1944
PspPI	GGNCC	8 cut(s)	439, 536, 626, 719, 1087, 1472, 1738, 1943
PstI	CTGCAG	1 cut(s)	718
RsaI	GTAC	6 cut(s)	41, 410, 1390, 1528, 1791, 1851
RsaNI	GTAC	6 cut(s)	40, 409, 1389, 1527, 1790, 1850
RseI	CAYNNNNRTG	3 cut(s)	531, 929, 1514
SatI	GCNGC	7 cut(s)	272, 467, 642, 645, 1009, 1056, 1227
Sau3AI	GATC	5 cut(s)	304, 773, 1119, 1249, 1917
Sau96I	GGNCC	8 cut(s)	439, 536, 626, 719, 1087, 1472, 1738, 1943
ScaI	AGTACT	3 cut(s)	41, 1528, 1851
SchI	GAGTC	4 cut(s)	23, 1135, 1583, 1742
ScrFI	CCNGG	5 cut(s)	97, 353, 843, 1497, 1980
SduI	GDGCHC	1 cut(s)	1176
SfaNI	GCATC	9 cut(s)	668, 801, 1103, 1112, 1174, 1293, 1480, 1747, 1897
SfcI	CTRYAG	3 cut(s)	714, 1522, 1912
SfuI	TTCGAA	1 cut(s)	1356
SinI	GGWCC	6 cut(s)	626, 719, 1087, 1472, 1738, 1943
SmiMI	CAYNNNNRTG	3 cut(s)	531, 929, 1514
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SphI	GCATGC	2 cut(s)	1062, 1509
SsiI	CCGC	1 cut(s)	618
SspI	AATATT	1 cut(s)	1042
SspMI	CTAG	1 cut(s)	1169
StyD4I	CCNGG	5 cut(s)	95, 351, 841, 1495, 1978
TaaI	ACNGT	5 cut(s)	231, 954, 994, 1648, 2057
TaiI	ACGT	3 cut(s)	284, 754, 1179
TaqI	TCGA	1 cut(s)	1356
TatI	WGTACW	4 cut(s)	39, 1388, 1526, 1849
TfiI	GAWTC	4 cut(s)	148, 208, 1683, 1809
TscAI	CASTG	3 cut(s)	1105, 1653, 2019
TseFI	GTSAC	5 cut(s)	65, 696, 832, 1208, 1361
TseI	GCWGC	7 cut(s)	271, 466, 641, 644, 1008, 1055, 1226
Tsp45I	GTSAC	5 cut(s)	65, 696, 832, 1208, 1361
TspDTI	ATGAA	6 cut(s)	50, 129, 135, 146, 929, 1405
TspGWI	ACGGA	2 cut(s)	1401, 1821
TspRI	CASTG	3 cut(s)	1105, 1653, 2019
VneI	GTGCAC	1 cut(s)	1172
VpaK11BI	GGWCC	6 cut(s)	626, 719, 1087, 1472, 1738, 1943
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	2 cut(s)	289, 484
XceI	RCATGY	4 cut(s)	764, 1062, 1235, 1509
XmiI	GTMKAC	1 cut(s)	1349
XmnI	GAANNNNTTC	3 cut(s)	137, 230, 1407
XspI	CTAG	1 cut(s)	1169
ZrmI	AGTACT	3 cut(s)	41, 1528, 1851
Zsp2I	ATGCAT	5 cut(s)	1096, 1167, 1286, 1507, 1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.