Rroxscaffold_2G00103380

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
25913962 .. 25921167
7206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103380.1

Sequence Viewer

Length: 4236 bp
ATGGCTTCCTTGAAGAGTTCTGTACTTGCTTCTATAAGGAAGCATTATAGTAGTAGTAGTCCATCCAGAAGGGACAGATTCTCTGTAGTGGTTTCAGTCTGTTGTGCTCTTACTGGCATTGCCTTTTTTGGTGCTGGATTGTGGATTCTGATAGCCAATGGTGATGATCTATCAAATTATTTTGAAAGCTGGTTGGATTACCTTGTTAGAGGACTAGTTTGGATTTCCTTCACAATTTCCTTGCTTGTTCAAAGGTCTAAATGGATCAAAATTCTGAACTCTGTTTGGTGGGTGTCCTCCTTTTCATTGGTCTCGGCTGTAAACATAGAAATACTAGTAAGAACCCATAGCATTCGAATTTATGATGTGCTGACATGGCCAGTGAGCTTCTTACTTCTATTGTGTGCTGTTAGAAACCTCAGCCACTTTGTTTATGACCAAAGCCAAGATAATAGCATATCAGAGCCTCTATTAGCCAAAAAGTACGCTAAAAAGAGCCAGAAAACACAACTAGGCAATGCCGGTTTCCTTAGCAAATTGACATTTGCTTGGATCAATCCTTTACTCACTTTAGGCTACTCAAAAACATTAGCTCCTGAAGACATACCATCTCTGGTTTCAGAAGATGAATCAGATTTAGCATACCAAAAATTTGCTCAAGCATGGGAGTCCCTGTCAAGGGATAAGAGCTCAAGCAGTACCAGAAACCTGGTTATGAGAGCAATAGCAAAAGTTTACTTGAAAGAGAATATATGGATTGCCTTTTGTGCATTCCTCAGGACAATTGCAGTTGTAGTTTCTCCTCTTATAATCTATGCATTTGTAAATTATTCGAATGCCAAGGAGGAAAATTTTTCCCAAGGCCTCATCATAGTGGGGTGCCTAATTATCACCAAGGTAGTCGAGTCTTTCACCCAGAGACATTGGTTCTTTGACTCAAGGAGGTCTGGAATGAGAATGAGGTCGGCTTTGATGGTTGCAGTTTATCAAAAGCAGCTGAAACTCTCTAGTGTGGGAAGGAGAAGGCACTCAGCTGGGGAGATAGTTAACTATATAGCAGTTGATGCTTACAGAATGGGAGAGTTCCCATGGTGGTTCCATTCAACATGGAGCTTTGCATTGCAATTAGTTCTTGCCATTGGAGTTCTTTTGGGGTGGTGGGGGTTGGTGCTCTACCGGGCACTTCAGAAGTGTCAGTCCCAGTTCATGATAGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTAGAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTCAGAAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAACTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGACTATAAAAGCTTGTGCTTTGGATAAGGACATAAATAGTTTTGATCATGGTGATCTTACTGAAATAGGCCAGAGGGGAATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTCAGTGCAGTAGATGCACACACTGCTACAATTCTGTTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTGTGATTCTCGTGACTCATCAAGTAGAATTTCTGTCTGAAGTTGACAAAATTCTGGTAATGGAAAGCGGACAAGTTACTCAATCTGGAAGCTATGAGAGTCTCTTGACCACTGGAACAGCATTTGAGCAACTGGTGAATGCTCATAGAGATGCAGTAACTACATTAGGTCCTTCAAATAATCAAAGCCAAGTAGAACCGGAAAAGACAGATATGATCCTGCATGAGGACTCTAATGTGACTAATCTCACTAGATACAGCAGTGAAGGGGACACTTCTGTGAAGGCTTCACCCACAGTGCAACTAACAGAAGACGAAGAAAAAGAGATTGGTGATGTTGGATGGAAGCCCTTCTGGGATTACATTTTTGTTTCCAAGGGAACACTTCTGCTAGCAATAGGCATAATGGCACAGGCTGGTTTTGTTTGTTTTCAGGCTGGTTCAACTTATTGGCTGGCTCTCGCCATTCAAAATCCTAGTATAACTAGTCTTACACTTGTCGGTGTCTATACTGCAATCTCAACACTCAGTGCTGTATTTGTCTATCTGAGGTCAACCTTTGCAGCACATCTGGGACTAAGAGCTTCTAGAACATTTTTTGATGGTTTCACAGATGCCATCTTTAAGGCACCCATGTTGTTCTTTGACTCAACTCCTGTTGGGAGGATTTTGACACGAGCTTCATCAGATTTAAGTATCTTGGATTTTGACATACCTTTCTCCATTATCTTTGTTGTGTCTGCTGGTATGGAATTGCTGACATGGATTGGAATAATGGCTTCTGTCACATGGCAAGTTCTCATTGTAGCCGTTCTCACCATGGTTGCTTCAAAATATGTTCAGAGCTACTATCAAGCGTCTGCAAGGGAACTAATAAGAATCAATGGAACAACCAAAGCTCCTGTTATGAATTATGCGGCCGAGACATCACTTGGAGTGGTTACTATCAGAGCTTTTAAAATGGCTGACAAGTTCTTCCAAAAGTACCTAGAGCTAGTTGACACAGATGCAAGACTGTTCTTTCATTCGAATGCAACAATGGAGTGGTTAATTATAAGAACAGAAGCACTTCAAAATGTGACTCTATTTGTTGCTGCTTTTCTCCTTATTTCACTTCCCAAGGGTTATGTTGCTCCAGGGCTTGTGGGGCTTTCTCTTTCTTATGCTTTGACACTAACAATGACACAAATTTTTGTGATCCGGTGGTATTGTAACTTATCAAACTATATCATCTCAGTTGAAAGGATAAAACAGTTCATGCAGATTCCACCAGAGCCTCCGGCTATTGTGGAAGACAAGAGACCACCATCTTCATGGCCTACAAAGGGTAGGATAGAGCTGCATTCTCTCAAGATAAAATATCGTCCAAATGCACCACTAGTTCTCAAGGGAATTTCATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGCGGAAAGACTACACTTATAAGTGCTTTGTTTCGGTTAGTAGAGCCAAATAGCGGTAAAATTATCATAGATGGACTTGACATCTGCTCTATGGGTCTAAAGGATTTAAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGTAGCATCAGAACCAACTTGGATCCTCTTGGTCTTTACTCCGATGATGAAATATGGAGGGCTCTAGAGAAGTGTCAGCTGAAGGCAACAGTCAGCAATCTACCTAATCTGCTAGATTCATCTGTAAGTGATGAAGGGGAAAATTGGAGTGCTGGGCAACGCCAGCTGTTTTGCCTTGGCAGAGTCCTTCTGAAGAGGAACAGAATCCTAGTGCTAGATGAGGCTACTGCTTCCATCGATTCTGCAACAGACGCCGTTCTGCAAAGAATCATCAGGAAGGAATTTGCAGAATGCACAGTGATAACGGTTGCTCATAGGGTTCCAACAGTTATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAGCTAGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCCTACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGCTGTAGAGGAAACTGA

Protein Analysis

1411

Amino Acids

157.91

Weight (kDa)

8.49

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 15 - 140 9.5e-07 ABCC10 N-terminal domain
ABC_membrane PF00664 253 - 496 6.7e-11 ABC transporter transmembrane region
ABC_tran PF00005 567 - 701 3.2e-19 ABC transporter
ABC_membrane PF00664 874 - 1119 6.6e-25 ABC transporter transmembrane region
ABC_tran PF00005 1186 - 1334 2.5e-26 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 809, 3227, 3638
AccB1I GGYRCC 2 cut(s) 879, 2800
AciI CCGC 4 cut(s) 2241, 3089, 3621, 3672
AclWI GGATC 8 cut(s) 272, 560, 1240, 1534, 2383, 3364, 3788, 3801
AcoI YGGCCR 2 cut(s) 377, 3090
AcuI CTGAAG 5 cut(s) 618, 1169, 2232, 3872, 3983
AcyI GRCGYC 1 cut(s) 4023
AdeI CACNNNGTG 1 cut(s) 2702
AfaI GTAC 5 cut(s) 24, 485, 700, 1462, 3158
AfiI CCNNNNNNNGG 6 cut(s) 678, 679, 1549, 2398, 3497, 3671
AhlI ACTAGT 4 cut(s) 214, 334, 2657, 3550
AjnI CCWGG 3 cut(s) 708, 1280, 3307
AjuI GAANNNNNNNTTGG 4 cut(s) 2484, 2516, 4172, 4204
AleI CACNNNNGTG 1 cut(s) 2450
Alw21I GWGCWC 3 cut(s) 109, 692, 1173
Alw26I GTCTC 6 cut(s) 316, 913, 1558, 2279, 3089, 3466
AlwI GGATC 8 cut(s) 272, 560, 1240, 1534, 2383, 3364, 3788, 3801
AlwNI CAGNNNCTG 1 cut(s) 1820
Ama87I CYCGRG 1 cut(s) 2055
AoxI GGCC 6 cut(s) 377, 862, 2002, 2052, 3090, 3488
ApeKI GCWGC 4 cut(s) 994, 2735, 3266, 3511
ArsI GACNNNNNNTTYG 2 cut(s) 1290, 1322
Asp700I GAANNNNTTC 2 cut(s) 2522, 3240
AspS9I GGNCC 4 cut(s) 1751, 2053, 2342, 4123
AsuC2I CCSGG 1 cut(s) 1178
AsuII TTCGAA 3 cut(s) 355, 833, 3200
AsuNHI GCTAGC 1 cut(s) 2563
AvaI CYCGRG 1 cut(s) 2055
AvaII GGWCC 3 cut(s) 1751, 2342, 4123
AxyI CCTNAGG 1 cut(s) 776
BaeGI GKGCMC 1 cut(s) 1183
BaeI ACNNNNGTAYC 2 cut(s) 2419, 2452
BalI TGGCCA 1 cut(s) 379
BamHI GGATCC 1 cut(s) 3793
BanI GGYRCC 2 cut(s) 879, 2800
BanII GRGCYC 2 cut(s) 692, 3835
BauI CACGAG 2 cut(s) 2183, 2847
BbsI GAAGAC 5 cut(s) 606, 1940, 2177, 2490, 3471
Bbv12I GWGCWC 3 cut(s) 109, 692, 1173
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 4 cut(s) 1006, 2747, 3253, 3498
BceAI ACGGC 2 cut(s) 2966, 4010
BciT130I CCWGG 3 cut(s) 710, 1282, 3309
BciVI GTATCC 4 cut(s) 1439, 1686, 1860, 4168
BclI TGATCA 1 cut(s) 1978
BcnI CCSGG 1 cut(s) 1178
BcoDI GTCTC 6 cut(s) 316, 913, 1558, 2279, 3089, 3466
BcuI ACTAGT 4 cut(s) 214, 334, 2657, 3550
BfmI CTRYAG 3 cut(s) 84, 2065, 4222
BfuI GTATCC 4 cut(s) 1439, 1686, 1860, 4168
BisI GCNGC 5 cut(s) 995, 2736, 3090, 3267, 3512
BlpI GCTNAGC 1 cut(s) 3737
BlsI GCNGC 5 cut(s) 996, 2737, 3091, 3268, 3513
BmcAI AGTACT 1 cut(s) 1462
Bme1390I CCNGG 4 cut(s) 710, 1178, 1282, 3309
Bme18I GGWCC 3 cut(s) 1751, 2342, 4123
BmeT110I CYCGRG 1 cut(s) 2055
BmgT120I GGNCC 4 cut(s) 1751, 2053, 2342, 4123
BmiI GGNNCC 6 cut(s) 881, 1097, 1837, 2802, 3795, 4092
BmrFI CCNGG 4 cut(s) 710, 1178, 1282, 3309
BmrI ACTGGG 1 cut(s) 1195
BmtI GCTAGC 1 cut(s) 2567
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 5 cut(s) 606, 1940, 2177, 2490, 3471
BpmI CTGGAG 1 cut(s) 3291
Bpu10I CCTNAGC 2 cut(s) 419, 530
Bpu1102I GCTNAGC 1 cut(s) 3737
Bpu14I TTCGAA 3 cut(s) 355, 833, 3200
BpuEI CTTGAG 7 cut(s) 642, 676, 922, 1666, 3506, 3542, 3735
BpuMI CCSGG 1 cut(s) 1178
Bsa29I ATCGAT 1 cut(s) 4008
BsaHI GRCGYC 1 cut(s) 4023
BsaI GGTCTC 3 cut(s) 316, 1558, 3466
BsaWI WCCGGW 2 cut(s) 2371, 3372
BsaXI ACNNNNNCTCC 8 cut(s) 577, 607, 659, 689, 1491, 1521, 3055, 3085
Bsc4I CCNNNNNNNGG 6 cut(s) 678, 679, 1549, 2398, 3497, 3671
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 7 cut(s) 118, 380, 1201, 1388, 1754, 2290, 2310
Bse21I CCTNAGG 1 cut(s) 776
Bse3DI GCAATG 3 cut(s) 117, 523, 1118
BseBI CCWGG 3 cut(s) 710, 1282, 3309
BseCI ATCGAT 1 cut(s) 4008
BseGI GGATG 5 cut(s) 62, 1392, 2161, 2519, 3744
BseLI CCNNNNNNNGG 6 cut(s) 678, 679, 1549, 2398, 3497, 3671
BseMI GCAATG 3 cut(s) 117, 523, 1118
BseMII CTCAG 9 cut(s) 433, 790, 1044, 1233, 1335, 2711, 2713, 3420, 3751
BseNI ACTGG 7 cut(s) 118, 380, 1201, 1388, 1754, 2290, 2310
BseRI GAGGAG 1 cut(s) 792
BseSI GKGCMC 1 cut(s) 1183
BseX3I CGGCCG 1 cut(s) 3090
BseXI GCAGC 4 cut(s) 1006, 2747, 3253, 3498
BseYI CCCAGC 2 cut(s) 1034, 3923
BsgI GTGCAG 1 cut(s) 2127
Bsh1285I CGRYCG 1 cut(s) 3093
BshFI GGCC 6 cut(s) 379, 864, 2004, 2054, 3092, 3490
BshNI GGYRCC 2 cut(s) 879, 2800
BshVI ATCGAT 1 cut(s) 4008
BsiEI CGRYCG 1 cut(s) 3093
BsiHKAI GWGCWC 3 cut(s) 109, 692, 1173
BsiHKCI CYCGRG 1 cut(s) 2055
BsiSI CCGG 5 cut(s) 522, 1177, 2372, 3373, 3452
BslFI GGGAC 9 cut(s) 86, 655, 1183, 1362, 1430, 1891, 2456, 2760, 3601
BslI CCNNNNNNNGG 6 cut(s) 678, 679, 1549, 2398, 3497, 3671
BsmAI GTCTC 6 cut(s) 316, 913, 1558, 2279, 3089, 3466
BsmFI GGGAC 9 cut(s) 86, 655, 1183, 1362, 1430, 1891, 2456, 2760, 3601
BsmI GAATGC 8 cut(s) 351, 770, 841, 1459, 2317, 3208, 3514, 4067
BsnI GGCC 6 cut(s) 379, 864, 2004, 2054, 3092, 3490
Bso31I GGTCTC 3 cut(s) 316, 1558, 3466
BsoBI CYCGRG 1 cut(s) 2055
Bsp119I TTCGAA 3 cut(s) 355, 833, 3200
Bsp1286I GDGCHC 5 cut(s) 109, 692, 1173, 1183, 3835
Bsp1720I GCTNAGC 1 cut(s) 3737
Bsp19I CCATGG 2 cut(s) 1088, 2991
BspACI CCGC 4 cut(s) 2241, 3089, 3621, 3672
BspANI GGCC 6 cut(s) 379, 864, 2004, 2054, 3092, 3490
BspCNI CTCAG 9 cut(s) 432, 789, 1043, 1234, 1336, 2712, 2712, 3419, 3750
BspDI ATCGAT 1 cut(s) 4008
BspHI TCATGA 2 cut(s) 1206, 2140
BspLI GGNNCC 6 cut(s) 881, 1097, 1837, 2802, 3795, 4092
BspOI GCTAGC 1 cut(s) 2567
BspPI GGATC 8 cut(s) 272, 560, 1240, 1534, 2383, 3364, 3788, 3801
BspT104I TTCGAA 3 cut(s) 355, 833, 3200
BspT107I GGYRCC 2 cut(s) 879, 2800
BspTNI GGTCTC 3 cut(s) 316, 1558, 3466
BsrDI GCAATG 3 cut(s) 117, 523, 1118
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 7 cut(s) 118, 380, 1201, 1388, 1754, 2290, 2310
BssAI RCCGGY 1 cut(s) 521
BssNI GRCGYC 1 cut(s) 4023
BssSI CACGAG 2 cut(s) 2183, 2847
BssT1I CCWWGG 8 cut(s) 840, 859, 894, 1088, 2547, 2991, 3291, 3946
Bst2BI CACGAG 2 cut(s) 2183, 2847
Bst2UI CCWGG 3 cut(s) 710, 1282, 3309
Bst6I CTCTTC 4 cut(s) 8, 1281, 1411, 3959
BstACI GRCGYC 1 cut(s) 4023
BstAPI GCANNNNNTGC 3 cut(s) 1064, 2114, 2123
BstBI TTCGAA 3 cut(s) 355, 833, 3200
BstC8I GCNNGC 4 cut(s) 2052, 2565, 2628, 3935
BstDSI CCRYGG 2 cut(s) 1088, 2991
BstENI CCTNNNNNAGG 1 cut(s) 2396
BstF5I GGATG 5 cut(s) 62, 1392, 2161, 2519, 3744
BstMAI GTCTC 6 cut(s) 316, 913, 1558, 2279, 3089, 3466
BstMCI CGRYCG 1 cut(s) 3093
BstMWI GCNNNNNNNGC 8 cut(s) 376, 767, 1064, 2114, 2123, 3319, 3934, 4022
BstNI CCWGG 3 cut(s) 710, 1282, 3309
BstSCI CCNGG 4 cut(s) 708, 1176, 1280, 3307
BstSFI CTRYAG 3 cut(s) 84, 2065, 4222
BstSLI GKGCMC 1 cut(s) 1183
BstV1I GCAGC 4 cut(s) 1006, 2747, 3253, 3498
BstV2I GAAGAC 5 cut(s) 606, 1940, 2177, 2490, 3471
BstX2I RGATCY 2 cut(s) 1245, 3793
BstXI CCANNNNNNTGG 2 cut(s) 709, 3486
BstYI RGATCY 2 cut(s) 1245, 3793
BstZI CGGCCG 1 cut(s) 3090
Bsu15I ATCGAT 1 cut(s) 4008
Bsu36I CCTNAGG 1 cut(s) 776
BsuI GTATCC 4 cut(s) 1439, 1686, 1860, 4168
BsuRI GGCC 6 cut(s) 379, 864, 2004, 2054, 3092, 3490
BsuTUI ATCGAT 1 cut(s) 4008
BtgI CCRYGG 2 cut(s) 1088, 2991
BtsCI GGATG 5 cut(s) 62, 1392, 2161, 2519, 3744
BtsI GCAGTG 2 cut(s) 2121, 2440
BtsIMutI CAGTG 8 cut(s) 387, 2110, 2121, 2283, 2440, 2475, 2707, 4074
Cac8I GCNNGC 4 cut(s) 2052, 2565, 2628, 3935
CaiI CAGNNNCTG 1 cut(s) 1820
CciI TCATGA 2 cut(s) 1206, 2140
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 1751, 2053, 2342, 4123
ClaI ATCGAT 1 cut(s) 4008
CseI GACGC 2 cut(s) 3018, 4031
CsiI ACCWGGT 1 cut(s) 708
Csp6I GTAC 5 cut(s) 23, 484, 699, 1461, 3157
CviQI GTAC 5 cut(s) 23, 484, 699, 1461, 3157
DraI TTTAAA 1 cut(s) 3130
DraIII CACNNNGTG 1 cut(s) 2702
EaeI YGGCCR 2 cut(s) 377, 3090
EagI CGGCCG 1 cut(s) 3090
Eam1104I CTCTTC 4 cut(s) 8, 1281, 1411, 3959
EarI CTCTTC 4 cut(s) 8, 1281, 1411, 3959
Ecl136II GAGCTC 1 cut(s) 690
EclXI CGGCCG 1 cut(s) 3090
Eco130I CCWWGG 8 cut(s) 840, 859, 894, 1088, 2547, 2991, 3291, 3946
Eco147I AGGCCT 1 cut(s) 864
Eco24I GRGCYC 2 cut(s) 692, 3835
Eco31I GGTCTC 3 cut(s) 316, 1558, 3466
Eco32I GATATC 1 cut(s) 2080
Eco47I GGWCC 3 cut(s) 1751, 2342, 4123
Eco52I CGGCCG 1 cut(s) 3090
Eco53kI GAGCTC 1 cut(s) 690
Eco57I CTGAAG 5 cut(s) 618, 1169, 2232, 3872, 3983
Eco81I CCTNAGG 1 cut(s) 776
Eco88I CYCGRG 1 cut(s) 2055
EcoICRI GAGCTC 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 2396
EcoO109I RGGNCCY 1 cut(s) 2342
EcoRI GAATTC 1 cut(s) 1328
EcoRII CCWGG 3 cut(s) 708, 1280, 3307
EcoRV GATATC 1 cut(s) 2080
EcoT14I CCWWGG 8 cut(s) 840, 859, 894, 1088, 2547, 2991, 3291, 3946
EcoT22I ATGCAT 1 cut(s) 820
EcoT38I GRGCYC 2 cut(s) 692, 3835
ErhI CCWWGG 8 cut(s) 840, 859, 894, 1088, 2547, 2991, 3291, 3946
FaqI GGGAC 9 cut(s) 86, 655, 1183, 1362, 1430, 1891, 2456, 2760, 3601
FbaI TGATCA 1 cut(s) 1978
Fnu4HI GCNGC 5 cut(s) 995, 2736, 3090, 3267, 3512
FokI GGATG 5 cut(s) 49, 1399, 2168, 2526, 3731
FriOI GRGCYC 2 cut(s) 692, 3835
Fsp4HI GCNGC 5 cut(s) 995, 2736, 3090, 3267, 3512
GluI GCNGC 5 cut(s) 995, 2736, 3090, 3267, 3512
GsaI CCCAGC 2 cut(s) 1038, 3927
GsuI CTGGAG 1 cut(s) 3291
HaeIII GGCC 6 cut(s) 379, 864, 2004, 2054, 3092, 3490
HapII CCGG 5 cut(s) 522, 1177, 2372, 3373, 3452
HgaI GACGC 2 cut(s) 3018, 4031
Hin1I GRCGYC 1 cut(s) 4023
HincII GTYRAC 4 cut(s) 1048, 2218, 2727, 3172
HindII GTYRAC 4 cut(s) 1048, 2218, 2727, 3172
HindIII AAGCTT 2 cut(s) 1944, 4196
HpaI GTTAAC 1 cut(s) 1048
HpaII CCGG 5 cut(s) 522, 1177, 2372, 3373, 3452
Hpy166II GTNNAC 8 cut(s) 322, 736, 1048, 1711, 1751, 2218, 2727, 3172
Hpy8I GTNNAC 8 cut(s) 322, 736, 1048, 1711, 1751, 2218, 2727, 3172
HpyF10VI GCNNNNNNNGC 8 cut(s) 376, 767, 1064, 2114, 2123, 3319, 3934, 4022
Hsp92I GRCGYC 1 cut(s) 4023
Ksp22I TGATCA 1 cut(s) 1978
KspAI GTTAAC 1 cut(s) 1048
LmnI GCTCC 7 cut(s) 598, 1110, 1491, 1623, 1760, 3076, 3310
Lsp1109I GCAGC 4 cut(s) 1006, 2747, 3253, 3498
MabI ACCWGGT 1 cut(s) 708
MfeI CAATTG 1 cut(s) 783
MflI RGATCY 2 cut(s) 1245, 3793
MhlI GDGCHC 5 cut(s) 109, 692, 1173, 1183, 3835
MlsI TGGCCA 1 cut(s) 379
MluNI TGGCCA 1 cut(s) 379
MlyI GAGTC 9 cut(s) 677, 914, 929, 2182, 2281, 2396, 2813, 3247, 3963
MmeI TCCRAC 4 cut(s) 174, 1738, 2491, 4118
Mox20I TGGCCA 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 2 cut(s) 2522, 3240
MscI TGGCCA 1 cut(s) 379
MseI TTAA 8 cut(s) 1047, 1269, 2016, 2796, 2864, 3129, 3221, 3725
MslI CAYNNNNRTG 7 cut(s) 872, 2145, 2322, 2450, 3201, 3484, 4118
Msp20I TGGCCA 1 cut(s) 379
MspA1I CMGCKG 5 cut(s) 997, 1034, 2050, 3850, 3937
MspI CCGG 5 cut(s) 522, 1177, 2372, 3373, 3452
MspR9I CCNGG 4 cut(s) 710, 1178, 1282, 3309
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 8 cut(s) 351, 770, 841, 1459, 2317, 3208, 3514, 4067
MvaI CCWGG 3 cut(s) 710, 1282, 3309
MwoI GCNNNNNNNGC 8 cut(s) 376, 767, 1064, 2114, 2123, 3319, 3934, 4022
NciI CCSGG 1 cut(s) 1178
NcoI CCATGG 2 cut(s) 1088, 2991
NheI GCTAGC 1 cut(s) 2563
NlaIV GGNNCC 6 cut(s) 881, 1097, 1837, 2802, 3795, 4092
NmeAIII GCCGAG 2 cut(s) 293, 3118
NmuCI GTSAC 6 cut(s) 1389, 2185, 2410, 2956, 3250, 4109
NsiI ATGCAT 1 cut(s) 820
NspV TTCGAA 3 cut(s) 355, 833, 3200
OliI CACNNNNGTG 1 cut(s) 2450
PagI TCATGA 2 cut(s) 1206, 2140
PceI AGGCCT 1 cut(s) 864
PctI GAATGC 8 cut(s) 351, 770, 841, 1459, 2317, 3208, 3514, 4067
PdmI GAANNNNTTC 2 cut(s) 2522, 3240
PflFI GACNNNGTC 1 cut(s) 4115
PkrI GCNGC 5 cut(s) 996, 2737, 3091, 3268, 3513
PleI GAGTC 9 cut(s) 676, 913, 929, 2182, 2280, 2396, 2813, 3247, 3962
PpsI GAGTC 9 cut(s) 676, 913, 929, 2182, 2280, 2396, 2813, 3247, 3962
PpuMI RGGWCCY 1 cut(s) 2342
PsiI TTATAA 3 cut(s) 809, 3227, 3638
Psp124BI GAGCTC 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 2342
Psp6I CCWGG 3 cut(s) 708, 1280, 3307
PspFI CCCAGC 2 cut(s) 1034, 3923
PspGI CCWGG 3 cut(s) 708, 1280, 3307
PspN4I GGNNCC 6 cut(s) 881, 1097, 1837, 2802, 3795, 4092
PspPI GGNCC 4 cut(s) 1751, 2053, 2342, 4123
PspPPI RGGWCCY 1 cut(s) 2342
PstNI CAGNNNCTG 1 cut(s) 1820
PsuI RGATCY 2 cut(s) 1245, 3793
PsyI GACNNNGTC 1 cut(s) 4115
PvuII CAGCTG 5 cut(s) 997, 1034, 2050, 3850, 3937
RsaI GTAC 5 cut(s) 24, 485, 700, 1462, 3158
RsaNI GTAC 5 cut(s) 23, 484, 699, 1461, 3157
RseI CAYNNNNRTG 7 cut(s) 872, 2145, 2322, 2450, 3201, 3484, 4118
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 8 cut(s) 1047, 1269, 2016, 2796, 2864, 3129, 3221, 3725
SatI GCNGC 5 cut(s) 995, 2736, 3090, 3267, 3512
Sau96I GGNCC 4 cut(s) 1751, 2053, 2342, 4123
ScaI AGTACT 1 cut(s) 1462
SchI GAGTC 9 cut(s) 677, 914, 929, 2182, 2281, 2396, 2813, 3247, 3963
ScrFI CCNGG 4 cut(s) 710, 1178, 1282, 3309
SduI GDGCHC 5 cut(s) 109, 692, 1173, 1183, 3835
SexAI ACCWGGT 1 cut(s) 708
SfcI CTRYAG 3 cut(s) 84, 2065, 4222
SfuI TTCGAA 3 cut(s) 355, 833, 3200
SinI GGWCC 3 cut(s) 1751, 2342, 4123
SmiMI CAYNNNNRTG 7 cut(s) 872, 2145, 2322, 2450, 3201, 3484, 4118
SmlI CTYRAG 7 cut(s) 657, 691, 937, 1645, 3521, 3557, 3750
SmoI CTYRAG 7 cut(s) 657, 691, 937, 1645, 3521, 3557, 3750
SpeI ACTAGT 4 cut(s) 214, 334, 2657, 3550
SseBI AGGCCT 1 cut(s) 864
SsiI CCGC 4 cut(s) 2241, 3089, 3621, 3672
SspI AATATT 1 cut(s) 4211
SstI GAGCTC 1 cut(s) 692
StuI AGGCCT 1 cut(s) 864
StyD4I CCNGG 4 cut(s) 708, 1176, 1280, 3307
StyI CCWWGG 8 cut(s) 840, 859, 894, 1088, 2547, 2991, 3291, 3946
TaqI TCGA 7 cut(s) 355, 833, 903, 1318, 1824, 3200, 4008
TaqII GACCGA 1 cut(s) 1294
TatI WGTACW 2 cut(s) 22, 1460
TauI GCSGC 1 cut(s) 3092
Tru1I TTAA 8 cut(s) 1047, 1269, 2016, 2796, 2864, 3129, 3221, 3725
Tru9I TTAA 8 cut(s) 1047, 1269, 2016, 2796, 2864, 3129, 3221, 3725
TscAI CASTG 8 cut(s) 387, 2110, 2128, 2290, 2440, 2475, 2707, 4074
TseFI GTSAC 6 cut(s) 1389, 2185, 2410, 2956, 3250, 4109
TseI GCWGC 4 cut(s) 994, 2735, 3266, 3511
Tsp45I GTSAC 6 cut(s) 1389, 2185, 2410, 2956, 3250, 4109
TspRI CASTG 8 cut(s) 387, 2110, 2128, 2290, 2440, 2475, 2707, 4074
Tth111I GACNNNGTC 1 cut(s) 4115
VpaK11BI GGWCC 3 cut(s) 1751, 2342, 4123
XagI CCTNNNNNAGG 1 cut(s) 2396
XbaI TCTAGA 2 cut(s) 2759, 3835
XcmI CCANNNNNNNNNTGG 1 cut(s) 3483
XmnI GAANNNNTTC 2 cut(s) 2522, 3240
ZrmI AGTACT 1 cut(s) 1462
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.