Rroxscaffold_2G00102330

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
24436608 .. 24443031
6424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102330.1

Sequence Viewer

Length: 4407 bp
ATGGCTTCCTTGAAGAGTTCTGTACTTAGGATCACTTCTCGGATTTGTGATGGAGAATTTGATCTGAGTTCCAACTGCACTCAAAGGACTATGATTAATGCAGTAAATCTTCTCTTCCTCTTTCTTTTTTGCTTATTTACTCTTATAGCTTCTATAAGGAAGCATTATAGTAGTAGTAGTCCATCCAGAAGGGACAGATTCTCTCTAGTGGTTTCAGTCTGTTGTGCTCTTACTGGCATTGCCTTTTTTGGTGCTGGATTGTGGATTCTGATAGCCAATGGTGATGATCTATCAAATTATTTTGAAAGCTGGTTGGATTACCTTGTTAGAGGACTAGTTTGGATTTCCTTCACAATTTCCTTGCTTGTTCAGAGGTCTAAATGGATCAAAATTCTGAACTCCGTTTGGTGGGTGTCCTCCTTTTCATTGGTCTCGGCTGTCAACATAGAAATACTAGTAAGAACCCATAGCATTCGAATTTACGATGTGCTGACATGGCCAGTGAGCTTCTTACTTCTATTGTGTGCTGTTAGAAACCTCAGCCACTTTGTTTATGACCAAAGCCAAGATAATAGCATATCAGAGCCTCTATTAGCCAAAAAGTATGCTGAAAAGAGCCATAAAACACAACTAGGCAATGCCGGTTTCCTTAGCAAATTGACATTTGCTTGGATCAATCCTTTACTCACTTTAGGCTACTCAAAAGCATTAGCTCCTGAAGACATACCATCTCTGGTTTCAGAAGATGAATCAGATTTAGCATACCAAAAATTTGCTCAAGCATGGGAGTCCCTGTCAAGGGATAAGAGCTCAAGCAGTACCAGAAACCTGGTTATGAGAGCAATAGCAAAAGTTTACTCGAAGGAGAATATATGGATTGCCTTTTGTGCATTCCTCAGGACAATTGCAGTTGTAGTTTCTCCTCTTATACTCTATGCATTTGTAAATTATTCGAATGCCGAGGAGGAAAATTTTTCCCAAGGCCTCATCATAGTGGGGTGCCTAATTATCACCAAAGTAGTCGAGTCTTTCACCCAGAGACATTGGTTCTTTGACTCAAGGAGGTCTGGAATGAGAATGAGGTCGGCTTTGATGGTCGCAATTTATCAAAAGCAGCTGAAACTCTCTAGTGTGGGAAGGAGAAGGCACTCAGCTGGGGAGATAGTTAACTATATAGCAGTTGATGCTTACAGAATGGGAGAGTTCCCATGGTGGTTCCATTCAACATGGAGCTTTGCATTGCAATTAGTTCTTGCCATTGGAGTTCTTTTCGGGGTGGTGGGGGTTGGTGCTCTACCGGGTTTAATTCCTCTCCTCATTTGTGGTCTTCTAAATGTGCCTTTTGCAAAGGCACTTCAGAAGTGTCAGTCCCAGTTCATGATAGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCGGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTCAGAAAGGCGTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGAAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGCTTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTCCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACTCTGAAAGAAGCGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAACTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGACTATAAAAGCTTGTGCTTTGGATAAGGACATAAATAGTTTTGATCATGGTGATCTTACTGAAATAGGCCAGAGGGGAATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTCAGTGCAGTAGATGCACACACTGCCACAATTCTGTTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTGTGATTCTCGTGACTCATCAAGTAGAATTTCTGTCTGAAGTTGACAAAATTCTGGTAATGGAGAGCGGACAAGTTACTCAATCTGGAAGCTATGAGAGTCTCTTGACCACTGGAACAGCATTTGAGCAACTGGTGAATGCTCATAGAGATGCAGTAACTACATTAGGTCCTTCAAATAATCAAAGCCAAGTAGAACCAGAAAAGACAGATATGATCCTGCATGAGGACTCTAATGTAACTAATCTCACTAGATACAGCAGTGAAGGGGACACTTCTGTGAAGGCTTCACCCACAGTGCAACTAACAGAAGACGAAGAAAAAGAGATTGGTGATGTTGGATGGAAGCCCTTCTGGGATTACATTTTTGTTTCCAAGGGAACACTTCTGCTAGCAATAGGCATAATGGCACAGGCTGGTTTTGTTTGTTTTCAGGCTGGTTCAACTTATTGGCTGGCTCTCGCCATTCAAAATCCTAGTATAACTAGTCTTACACTAGTCGGTGTCTATACTGCAATCTCAACACTCAGTGCTGTATTTGTCTATCTGAGGTCAACCTTTGCAGCACATCTGGGACTAAGAGCTTCTAGAACATTTTTTGATGGTTTCACAGATGCCATCTTTAAGGCTCCCATGTTGTTCTTTGACTCAACTCCTGTTGGGAGGATTTTGACACGAGCTTCATCAGATTTAAGTATCTTGGATTTTGACATACCTTTCTCCATTATCTTTGTTGTGTCTGCTGGTATGGAATTGCTGACATGGATTGGAATAATGGCTTCTGTCACATGGCAAGTTCTCATTGTAGCCGTTCTCACCATGGTTGCTTCAAAATATGTTCAGAGCTACTATCAAGCGTCTGCAAGGGAACTAATAAGAATCAATGGAACAACCAAAGCTCCTGTTATGAATTATGCGGCCGAGACATCACTTGGAGTGGTTACTATCAGAGCTTTTAAAATGGCTGACAAGTTCTTCCAAAAGTACCTAGAGCTAGTTGACACAGATGCAAGACTGTTCTTTCATTCGAATGCAACAATGGAGTGGTTAATTATAAGAACAGAAGCACTTCAAAATGTGACTCTTTTTGTTGCTGCTTTTCTCCTTATTTCACTTCCCAAGGGTTATGTTGCTCCAGGGCTTGTGGGGCTTTCTCTTTCTTATGCTTTGACACTAACAATGACACAAATTTTTGTGATCCGGTGGTATTGTAACTTATCAAACTATATCATCTCAGTTGAAAGGATAAAACAGTTCATGCAGATTCCACCAGAGCCTCCGGCTATTGTGGAAGACAAGAGACCACCATCTTCATGGCCTACAAAGGGTAGGATAGAGCTGCATTCTCTCAAGATAAAATATCGTCCAAATGCACCACTAGTTCTCAAGGGAATTTCATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGCGGAAAGACTACACTTATAAGTGCTTTGTTTCGGTTAGTAGAGCCAAATAGCGGTAAAATTATCATAGATGGACTTGACATCTGCTCTATGGGTCTAAAGGATTTAAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGTAGCATCAGAACCAACTTGGATCCTCTTGGTCTTTACTCTGATGATGAAATATGGAGGGCTCTAGAGAAGTGTCAGCTGAAGGCAACAGTCAGCAATCTACCTAATCTGCTAGATTCATCTGTAAGTGATGAAGGGGAAAATTGGAGTGCTGGGCAACGCCAGCTGTTTTGCCTTGGCAGAGTCCTTCTGAAGAGGAACAGAATCCTAGTGCTAGATGAGGCTACTGCTTCCATCGATTCTGCAACAGACGCCGTTCTACAAAGAATCATCAGGAAGGAATTTGCAGAATGCACAGTGATAACGGTTGCTCATAGGGTTCCAACAGTTATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAGCTAGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCCTACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGCTGTAGAGGAAACTGA

Protein Analysis

1468

Amino Acids

163.89

Weight (kDa)

8.21

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 23 - 180 8.6e-11 ABCC10 N-terminal domain
ABC_membrane PF00664 293 - 553 5.4e-22 ABC transporter transmembrane region
ABC_tran PF00005 624 - 758 1.1e-18 ABC transporter
ABC_membrane PF00664 931 - 1176 7e-25 ABC transporter transmembrane region
ABC_tran PF00005 1243 - 1391 2.6e-26 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3398, 3809
AccB1I GGYRCC 1 cut(s) 999
AccBSI CCGCTC 1 cut(s) 2412
AciI CCGC 4 cut(s) 2412, 3260, 3792, 3843
AclWI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
AcoI YGGCCR 2 cut(s) 497, 3261
AcuI CTGAAG 5 cut(s) 738, 1340, 2403, 4043, 4154
AcyI GRCGYC 1 cut(s) 4194
AdeI CACNNNGTG 1 cut(s) 2873
AfaI GTAC 4 cut(s) 24, 820, 1633, 3329
AfiI CCNNNNNNNGG 7 cut(s) 408, 798, 799, 1720, 2569, 3668, 3842
AhlI ACTAGT 5 cut(s) 334, 454, 2828, 2839, 3721
AjnI CCWGG 3 cut(s) 828, 1451, 3478
AjuI GAANNNNNNNTTGG 4 cut(s) 2655, 2687, 4343, 4375
AleI CACNNNNGTG 1 cut(s) 2621
Alw21I GWGCWC 3 cut(s) 229, 812, 1294
Alw26I GTCTC 6 cut(s) 436, 1033, 1729, 2450, 3260, 3637
AlwI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
AlwNI CAGNNNCTG 1 cut(s) 1991
Ama87I CYCGRG 1 cut(s) 2226
AoxI GGCC 6 cut(s) 497, 982, 2173, 2223, 3261, 3659
ApeKI GCWGC 4 cut(s) 1114, 2906, 3437, 3682
ArsI GACNNNNNNTTYG 2 cut(s) 1461, 1493
AseI ATTAAT 1 cut(s) 96
Asp700I GAANNNNTTC 2 cut(s) 2693, 3411
AspS9I GGNCC 4 cut(s) 1922, 2224, 2513, 4294
AsuC2I CCSGG 1 cut(s) 1299
AsuII TTCGAA 3 cut(s) 475, 953, 3371
AsuNHI GCTAGC 1 cut(s) 2734
AvaI CYCGRG 1 cut(s) 2226
AvaII GGWCC 3 cut(s) 1922, 2513, 4294
AxyI CCTNAGG 1 cut(s) 896
BaeI ACNNNNGTAYC 2 cut(s) 2590, 2623
BalI TGGCCA 1 cut(s) 499
BamHI GGATCC 1 cut(s) 3964
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 2 cut(s) 812, 4006
BauI CACGAG 2 cut(s) 2354, 3018
BbsI GAAGAC 6 cut(s) 726, 1319, 2111, 2348, 2661, 3642
Bbv12I GWGCWC 3 cut(s) 229, 812, 1294
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 4 cut(s) 1126, 2918, 3424, 3669
BceAI ACGGC 2 cut(s) 3137, 4181
BciT130I CCWGG 3 cut(s) 830, 1453, 3480
BciVI GTATCC 4 cut(s) 1610, 1857, 2031, 4339
BclI TGATCA 1 cut(s) 2149
BcnI CCSGG 1 cut(s) 1299
BcoDI GTCTC 6 cut(s) 436, 1033, 1729, 2450, 3260, 3637
BcuI ACTAGT 5 cut(s) 334, 454, 2828, 2839, 3721
BfmI CTRYAG 2 cut(s) 2236, 4393
BfuI GTATCC 4 cut(s) 1610, 1857, 2031, 4339
BisI GCNGC 5 cut(s) 1115, 2907, 3261, 3438, 3683
BlpI GCTNAGC 1 cut(s) 3908
BlsI GCNGC 5 cut(s) 1116, 2908, 3262, 3439, 3684
BmcAI AGTACT 1 cut(s) 1633
Bme1390I CCNGG 4 cut(s) 830, 1299, 1453, 3480
Bme18I GGWCC 3 cut(s) 1922, 2513, 4294
BmeT110I CYCGRG 1 cut(s) 2226
BmgT120I GGNCC 4 cut(s) 1922, 2224, 2513, 4294
BmiI GGNNCC 6 cut(s) 1001, 1217, 2008, 2973, 3966, 4263
BmrFI CCNGG 4 cut(s) 830, 1299, 1453, 3480
BmrI ACTGGG 1 cut(s) 1366
BmtI GCTAGC 1 cut(s) 2738
BmuI ACTGGG 1 cut(s) 1366
BpiI GAAGAC 6 cut(s) 726, 1319, 2111, 2348, 2661, 3642
BpmI CTGGAG 1 cut(s) 3462
Bpu10I CCTNAGC 2 cut(s) 539, 650
Bpu1102I GCTNAGC 1 cut(s) 3908
Bpu14I TTCGAA 3 cut(s) 475, 953, 3371
BpuEI CTTGAG 7 cut(s) 762, 796, 1042, 1837, 3677, 3713, 3906
BpuMI CCSGG 1 cut(s) 1299
Bsa29I ATCGAT 1 cut(s) 4179
BsaHI GRCGYC 1 cut(s) 4194
BsaI GGTCTC 3 cut(s) 436, 1729, 3637
BsaJI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2718, 3162, 3462, 3479, 4117
BsaWI WCCGGW 1 cut(s) 3543
BsaXI ACNNNNNCTCC 6 cut(s) 779, 809, 1662, 1692, 3226, 3256
Bsc4I CCNNNNNNNGG 7 cut(s) 408, 798, 799, 1720, 2569, 3668, 3842
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 7 cut(s) 238, 500, 1372, 1559, 1925, 2461, 2481
Bse21I CCTNAGG 1 cut(s) 896
Bse3DI GCAATG 3 cut(s) 237, 643, 1238
BseBI CCWGG 3 cut(s) 830, 1453, 3480
BseCI ATCGAT 1 cut(s) 4179
BseDI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2718, 3162, 3462, 3479, 4117
BseGI GGATG 5 cut(s) 182, 1563, 2332, 2690, 3915
BseLI CCNNNNNNNGG 7 cut(s) 408, 798, 799, 1720, 2569, 3668, 3842
BseMI GCAATG 3 cut(s) 237, 643, 1238
BseNI ACTGG 7 cut(s) 238, 500, 1372, 1559, 1925, 2461, 2481
BseRI GAGGAG 3 cut(s) 912, 977, 1304
BseX3I CGGCCG 1 cut(s) 3261
BseXI GCAGC 4 cut(s) 1126, 2918, 3424, 3669
BseYI CCCAGC 2 cut(s) 1154, 4094
BsgI GTGCAG 2 cut(s) 61, 2298
Bsh1285I CGRYCG 1 cut(s) 3264
BshFI GGCC 6 cut(s) 499, 984, 2175, 2225, 3263, 3661
BshNI GGYRCC 1 cut(s) 999
BshVI ATCGAT 1 cut(s) 4179
BsiEI CGRYCG 1 cut(s) 3264
BsiHKAI GWGCWC 3 cut(s) 229, 812, 1294
BsiHKCI CYCGRG 1 cut(s) 2226
BsiSI CCGG 4 cut(s) 642, 1298, 3544, 3623
BslFI GGGAC 9 cut(s) 206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
BslI CCNNNNNNNGG 7 cut(s) 408, 798, 799, 1720, 2569, 3668, 3842
BsmAI GTCTC 6 cut(s) 436, 1033, 1729, 2450, 3260, 3637
BsmFI GGGAC 9 cut(s) 206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
BsmI GAATGC 8 cut(s) 471, 890, 961, 1630, 2488, 3379, 3685, 4238
BsnI GGCC 6 cut(s) 499, 984, 2175, 2225, 3263, 3661
Bso31I GGTCTC 3 cut(s) 436, 1729, 3637
BsoBI CYCGRG 1 cut(s) 2226
Bsp119I TTCGAA 3 cut(s) 475, 953, 3371
Bsp1286I GDGCHC 4 cut(s) 229, 812, 1294, 4006
Bsp1720I GCTNAGC 1 cut(s) 3908
Bsp19I CCATGG 2 cut(s) 1208, 3162
BspACI CCGC 4 cut(s) 2412, 3260, 3792, 3843
BspANI GGCC 6 cut(s) 499, 984, 2175, 2225, 3263, 3661
BspDI ATCGAT 1 cut(s) 4179
BspHI TCATGA 2 cut(s) 1377, 2311
BspLI GGNNCC 6 cut(s) 1001, 1217, 2008, 2973, 3966, 4263
BspOI GCTAGC 1 cut(s) 2738
BspPI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2554, 3535, 3959, 3972
BspT104I TTCGAA 3 cut(s) 475, 953, 3371
BspT107I GGYRCC 1 cut(s) 999
BspTNI GGTCTC 3 cut(s) 436, 1729, 3637
BsrBI CCGCTC 1 cut(s) 2412
BsrDI GCAATG 3 cut(s) 237, 643, 1238
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 7 cut(s) 238, 500, 1372, 1559, 1925, 2461, 2481
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2718, 3162, 3462, 3479, 4117
BssNI GRCGYC 1 cut(s) 4194
BssSI CACGAG 2 cut(s) 2354, 3018
BssT1I CCWWGG 6 cut(s) 979, 1208, 2718, 3162, 3462, 4117
Bst2BI CACGAG 2 cut(s) 2354, 3018
Bst2UI CCWGG 3 cut(s) 830, 1453, 3480
Bst6I CTCTTC 5 cut(s) 8, 119, 1452, 1582, 4130
BstACI GRCGYC 1 cut(s) 4194
BstAPI GCANNNNNTGC 3 cut(s) 1184, 2285, 2294
BstBI TTCGAA 3 cut(s) 475, 953, 3371
BstC8I GCNNGC 4 cut(s) 2223, 2736, 2799, 4106
BstDSI CCRYGG 2 cut(s) 1208, 3162
BstENI CCTNNNNNAGG 1 cut(s) 2567
BstF5I GGATG 5 cut(s) 182, 1563, 2332, 2690, 3915
BstMAI GTCTC 6 cut(s) 436, 1033, 1729, 2450, 3260, 3637
BstMCI CGRYCG 1 cut(s) 3264
BstMWI GCNNNNNNNGC 8 cut(s) 496, 887, 1184, 2285, 2294, 3490, 4105, 4193
BstNI CCWGG 3 cut(s) 830, 1453, 3480
BstSCI CCNGG 4 cut(s) 828, 1297, 1451, 3478
BstSFI CTRYAG 2 cut(s) 2236, 4393
BstV1I GCAGC 4 cut(s) 1126, 2918, 3424, 3669
BstV2I GAAGAC 6 cut(s) 726, 1319, 2111, 2348, 2661, 3642
BstX2I RGATCY 2 cut(s) 1416, 3964
BstXI CCANNNNNNTGG 2 cut(s) 829, 3657
BstYI RGATCY 2 cut(s) 1416, 3964
BstZI CGGCCG 1 cut(s) 3261
Bsu15I ATCGAT 1 cut(s) 4179
Bsu36I CCTNAGG 1 cut(s) 896
BsuI GTATCC 4 cut(s) 1610, 1857, 2031, 4339
BsuRI GGCC 6 cut(s) 499, 984, 2175, 2225, 3263, 3661
BsuTUI ATCGAT 1 cut(s) 4179
BtgI CCRYGG 2 cut(s) 1208, 3162
BtsCI GGATG 5 cut(s) 182, 1563, 2332, 2690, 3915
BtsI GCAGTG 2 cut(s) 2292, 2611
BtsIMutI CAGTG 8 cut(s) 507, 2281, 2292, 2454, 2611, 2646, 2878, 4245
Cac8I GCNNGC 4 cut(s) 2223, 2736, 2799, 4106
CaiI CAGNNNCTG 1 cut(s) 1991
CciI TCATGA 2 cut(s) 1377, 2311
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 4 cut(s) 1922, 2224, 2513, 4294
ClaI ATCGAT 1 cut(s) 4179
CseI GACGC 2 cut(s) 3189, 4202
CsiI ACCWGGT 1 cut(s) 828
Csp6I GTAC 4 cut(s) 23, 819, 1632, 3328
CviQI GTAC 4 cut(s) 23, 819, 1632, 3328
DraI TTTAAA 1 cut(s) 3301
DraIII CACNNNGTG 1 cut(s) 2873
EaeI YGGCCR 2 cut(s) 497, 3261
EagI CGGCCG 1 cut(s) 3261
Eam1104I CTCTTC 5 cut(s) 8, 119, 1452, 1582, 4130
EarI CTCTTC 5 cut(s) 8, 119, 1452, 1582, 4130
Ecl136II GAGCTC 1 cut(s) 810
EclXI CGGCCG 1 cut(s) 3261
Eco130I CCWWGG 6 cut(s) 979, 1208, 2718, 3162, 3462, 4117
Eco147I AGGCCT 1 cut(s) 984
Eco24I GRGCYC 2 cut(s) 812, 4006
Eco31I GGTCTC 3 cut(s) 436, 1729, 3637
Eco32I GATATC 1 cut(s) 2251
Eco47I GGWCC 3 cut(s) 1922, 2513, 4294
Eco52I CGGCCG 1 cut(s) 3261
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 5 cut(s) 738, 1340, 2403, 4043, 4154
Eco81I CCTNAGG 1 cut(s) 896
Eco88I CYCGRG 1 cut(s) 2226
EcoICRI GAGCTC 1 cut(s) 810
EcoNI CCTNNNNNAGG 1 cut(s) 2567
EcoO109I RGGNCCY 1 cut(s) 2513
EcoRI GAATTC 1 cut(s) 1499
EcoRII CCWGG 3 cut(s) 828, 1451, 3478
EcoRV GATATC 1 cut(s) 2251
EcoT14I CCWWGG 6 cut(s) 979, 1208, 2718, 3162, 3462, 4117
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 2 cut(s) 812, 4006
ErhI CCWWGG 6 cut(s) 979, 1208, 2718, 3162, 3462, 4117
FaqI GGGAC 9 cut(s) 206, 775, 1354, 1533, 1601, 2062, 2627, 2931, 3772
FbaI TGATCA 1 cut(s) 2149
Fnu4HI GCNGC 5 cut(s) 1115, 2907, 3261, 3438, 3683
FokI GGATG 5 cut(s) 169, 1570, 2339, 2697, 3902
FriOI GRGCYC 2 cut(s) 812, 4006
Fsp4HI GCNGC 5 cut(s) 1115, 2907, 3261, 3438, 3683
GluI GCNGC 5 cut(s) 1115, 2907, 3261, 3438, 3683
GsaI CCCAGC 2 cut(s) 1158, 4098
GsuI CTGGAG 1 cut(s) 3462
HaeIII GGCC 6 cut(s) 499, 984, 2175, 2225, 3263, 3661
HapII CCGG 4 cut(s) 642, 1298, 3544, 3623
HgaI GACGC 2 cut(s) 3189, 4202
Hin1I GRCGYC 1 cut(s) 4194
HincII GTYRAC 5 cut(s) 442, 1168, 2389, 2898, 3343
HindII GTYRAC 5 cut(s) 442, 1168, 2389, 2898, 3343
HindIII AAGCTT 2 cut(s) 2115, 4367
HpaI GTTAAC 1 cut(s) 1168
HpaII CCGG 4 cut(s) 642, 1298, 3544, 3623
Hpy166II GTNNAC 7 cut(s) 442, 856, 1168, 1922, 2389, 2898, 3343
Hpy8I GTNNAC 7 cut(s) 442, 856, 1168, 1922, 2389, 2898, 3343
HpyF10VI GCNNNNNNNGC 8 cut(s) 496, 887, 1184, 2285, 2294, 3490, 4105, 4193
Hsp92I GRCGYC 1 cut(s) 4194
Ksp22I TGATCA 1 cut(s) 2149
KspAI GTTAAC 1 cut(s) 1168
LmnI GCTCC 7 cut(s) 718, 1230, 1794, 1931, 2977, 3247, 3481
Lsp1109I GCAGC 4 cut(s) 1126, 2918, 3424, 3669
MabI ACCWGGT 1 cut(s) 828
MbiI CCGCTC 1 cut(s) 2412
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 2 cut(s) 1416, 3964
MhlI GDGCHC 4 cut(s) 229, 812, 1294, 4006
MlsI TGGCCA 1 cut(s) 499
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 9 cut(s) 797, 1034, 1049, 2353, 2452, 2567, 2984, 3418, 4134
MmeI TCCRAC 5 cut(s) 96, 294, 1909, 2662, 4289
Mox20I TGGCCA 1 cut(s) 499
Mph1103I ATGCAT 1 cut(s) 940
MroXI GAANNNNTTC 2 cut(s) 2693, 3411
MscI TGGCCA 1 cut(s) 499
MslI CAYNNNNRTG 7 cut(s) 992, 2316, 2493, 2621, 3372, 3655, 4289
Msp20I TGGCCA 1 cut(s) 499
MspA1I CMGCKG 5 cut(s) 1117, 1154, 2221, 4021, 4108
MspI CCGG 4 cut(s) 642, 1298, 3544, 3623
MspR9I CCNGG 4 cut(s) 830, 1299, 1453, 3480
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 8 cut(s) 471, 890, 961, 1630, 2488, 3379, 3685, 4238
MvaI CCWGG 3 cut(s) 830, 1453, 3480
MwoI GCNNNNNNNGC 8 cut(s) 496, 887, 1184, 2285, 2294, 3490, 4105, 4193
NciI CCSGG 1 cut(s) 1299
NcoI CCATGG 2 cut(s) 1208, 3162
NheI GCTAGC 1 cut(s) 2734
NlaIV GGNNCC 6 cut(s) 1001, 1217, 2008, 2973, 3966, 4263
NmeAIII GCCGAG 3 cut(s) 413, 985, 3289
NmuCI GTSAC 5 cut(s) 1560, 2356, 3127, 3421, 4280
NsiI ATGCAT 1 cut(s) 940
NspV TTCGAA 3 cut(s) 475, 953, 3371
OliI CACNNNNGTG 1 cut(s) 2621
PagI TCATGA 2 cut(s) 1377, 2311
PceI AGGCCT 1 cut(s) 984
PctI GAATGC 8 cut(s) 471, 890, 961, 1630, 2488, 3379, 3685, 4238
PdmI GAANNNNTTC 2 cut(s) 2693, 3411
PflFI GACNNNGTC 1 cut(s) 4286
PkrI GCNGC 5 cut(s) 1116, 2908, 3262, 3439, 3684
PleI GAGTC 9 cut(s) 796, 1033, 1049, 2353, 2451, 2567, 2984, 3418, 4133
PpsI GAGTC 9 cut(s) 796, 1033, 1049, 2353, 2451, 2567, 2984, 3418, 4133
PpuMI RGGWCCY 1 cut(s) 2513
PshBI ATTAAT 1 cut(s) 96
PsiI TTATAA 2 cut(s) 3398, 3809
Psp124BI GAGCTC 1 cut(s) 812
Psp5II RGGWCCY 1 cut(s) 2513
Psp6I CCWGG 3 cut(s) 828, 1451, 3478
PspFI CCCAGC 2 cut(s) 1154, 4094
PspGI CCWGG 3 cut(s) 828, 1451, 3478
PspN4I GGNNCC 6 cut(s) 1001, 1217, 2008, 2973, 3966, 4263
PspPI GGNCC 4 cut(s) 1922, 2224, 2513, 4294
PspPPI RGGWCCY 1 cut(s) 2513
PstNI CAGNNNCTG 1 cut(s) 1991
PsuI RGATCY 2 cut(s) 1416, 3964
PsyI GACNNNGTC 1 cut(s) 4286
PvuII CAGCTG 5 cut(s) 1117, 1154, 2221, 4021, 4108
RsaI GTAC 4 cut(s) 24, 820, 1633, 3329
RsaNI GTAC 4 cut(s) 23, 819, 1632, 3328
RseI CAYNNNNRTG 7 cut(s) 992, 2316, 2493, 2621, 3372, 3655, 4289
SacI GAGCTC 1 cut(s) 812
SatI GCNGC 5 cut(s) 1115, 2907, 3261, 3438, 3683
Sau96I GGNCC 4 cut(s) 1922, 2224, 2513, 4294
ScaI AGTACT 1 cut(s) 1633
SchI GAGTC 9 cut(s) 797, 1034, 1049, 2353, 2452, 2567, 2984, 3418, 4134
ScrFI CCNGG 4 cut(s) 830, 1299, 1453, 3480
SduI GDGCHC 4 cut(s) 229, 812, 1294, 4006
SexAI ACCWGGT 1 cut(s) 828
SfcI CTRYAG 2 cut(s) 2236, 4393
SfuI TTCGAA 3 cut(s) 475, 953, 3371
SinI GGWCC 3 cut(s) 1922, 2513, 4294
SmiMI CAYNNNNRTG 7 cut(s) 992, 2316, 2493, 2621, 3372, 3655, 4289
SmlI CTYRAG 7 cut(s) 777, 811, 1057, 1816, 3692, 3728, 3921
SmoI CTYRAG 7 cut(s) 777, 811, 1057, 1816, 3692, 3728, 3921
SpeI ACTAGT 5 cut(s) 334, 454, 2828, 2839, 3721
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 4 cut(s) 2412, 3260, 3792, 3843
SspI AATATT 1 cut(s) 4382
SstI GAGCTC 1 cut(s) 812
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 4 cut(s) 828, 1297, 1451, 3478
StyI CCWWGG 6 cut(s) 979, 1208, 2718, 3162, 3462, 4117
TaqI TCGA 8 cut(s) 475, 860, 953, 1023, 1489, 1995, 3371, 4179
TaqII GACCGA 1 cut(s) 1465
TatI WGTACW 2 cut(s) 22, 1631
TauI GCSGC 1 cut(s) 3263
TscAI CASTG 8 cut(s) 507, 2281, 2299, 2461, 2611, 2646, 2878, 4245
TseFI GTSAC 5 cut(s) 1560, 2356, 3127, 3421, 4280
TseI GCWGC 4 cut(s) 1114, 2906, 3437, 3682
Tsp45I GTSAC 5 cut(s) 1560, 2356, 3127, 3421, 4280
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 8 cut(s) 507, 2281, 2299, 2461, 2611, 2646, 2878, 4245
Tth111I GACNNNGTC 1 cut(s) 4286
VpaK11BI GGWCC 3 cut(s) 1922, 2513, 4294
VspI ATTAAT 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 2567
XbaI TCTAGA 2 cut(s) 2930, 4006
XcmI CCANNNNNNNNNTGG 1 cut(s) 3654
XmnI GAANNNNTTC 2 cut(s) 2693, 3411
ZrmI AGTACT 1 cut(s) 1633
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.