Rw2G035020

ABC transporter C family member

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
57697752 .. 57703943
6192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G035020.1

Sequence Viewer

Length: 4527 bp
ATGGCTTCCTTGAAGGGTTCTGTACTTGGGATCACTTCTCAGATTTGTGATGGAGAATTTGATCTTGGTTCTTACTGCACTCAAAGGACTATGATTAATGCAGTAAATCTTCTCTTCCTCTTTCTTTTTTGCTTATTTACTCTTATAGCTTCTATAAGGAAGCATTATAGTAGTAGTAGTCCATCCAGAAGGGATAGATTCTCAGTAGTGGTTTCAGTCTGTTGTGCTCTTACTGGTATTGCCTATTTTGGTGCTGGATTGTGGATTCTGATAGCCAATAATGATGATCTATCTAATTGTTTTGAAAGCTGGTTGGATTACCTTGTTAGAGGACTAGTTTGGATTTCCTTCACAATTTCCTTGCTTGTTCAAAGGTCTAAATGGATCAAAATTCTGAACTCTGTTTGGTGGGTGTCCTCCTTTTCATTGGTCTCGGCTGTAAACATAGAAATACTAACAAGAACCCATAGCATTTGTATTTTTGATGTGCTGACATGGCCAGTGAGCTTCTTACTTCTATTGTGTGCTGTTAGAAACCTCAGCCACTTTGTTCATGACCAAAGCCAAGAAAATAGCATATCAGAGCCTCTATTAGCCAAAAAGTCTACTGAAAAGAGCCAGAAAACACAACTAGGCAATGCCGGTTTCCTTAGCAAATTGACATTTTCTTGGATCAATCCTTTACTCACTTTAGGCTACTCAAAGACATTAGCTCCTGAAGACATACCATATCTGGTTTCAGAAGATGAAGCAGATTTAGCATACCAAAAATTTGCTCAAGCATGGGAGTCCCTGTCAAGGGATAAGAGCTCAAGCAGTACCAGAAACCTGGTTATGAGAGCAATAGCAAAAGTTTACTTGAAAGAGAATATATGGATTGCCTTTTGTGCATTCCTCAGGACAATTGCAGTTGTAGTTTCTCCTCTTATACTCTATGCATTTGTAAATTATTCCAATGCCGAGGAGGAAAATTTTTCCCAAGGCCTCATCATAGTGGGGTGCCTAATTATCACCAAAGTAGTCGAGTCTTTCACCCAGAGACATTGGTTCTTTGACTCAAGGAGATCTGGAATGAGAATGAGGTCGGCTTTGATGGTCGTAGTTTATCAAAAGCAGCTGAAACTCTCTAGTGTGGGAAGGAGAAGGCACTCAGCTGGGGAGATAGTTAACTATATAGCAGTTGATGCTTACAGAATGGGAGAGTTCCCATGGTGGTTCCATTCAACATGGAGCTTTGCATTGCAATTACTTCTTGCCATTGGAGTTCTTTTCAGGGTGGTGGGGGTTGGTGCTCTACCGGGTTTAATTCCTCTATTCATTTGCGGTCTTCTAAATGTGCCTTTTGCAAAGGCACTTCAGAAGTGTCAGTCCCAGTTCATGATAGCACAAGATGAGAGGCTTAGAGCCACTTCTGAGATCCTAAACAGTATGAAGATCATTAAGTTACAATCCTGGGAAGAGAAATTCAAAAACTCTGTCAATTCCCTTCGAGAAAGAGAATTCAAATGGTTGTCTGAGGGACAATTTAGAAAGGCTTATGGAACTTTACTCTACTGGATGTCACCAACCATTATCTCTTCTGTTGTTTTTCTAGGGTGTATCCTTTTCAAAAGTGTCCCTCTGAATGCAAGTACTATATTCACAGTTTTAGCTTCACTAAGGAGCATGGGAGAACCTGTGAGAATGATACCAGAGGCTCTTTCAGTAATGATCCAAGTCAAGGTCTCATTTGATCGGCTAAATGATTTTTTGCTTGATGATGAGTTGAAAGATGATGAGATAAGGAAGCTTCCATCACCAAATTCAGATGAGAGCTTGAGAATACAAAAAGGCATTTTCAGTTGGTATCCTGAATCAGCAATTCAAACACTGAAAGAAGTGAACCTAGAAGCAAAATGTGAGCAGAAAATTGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCACTTTTATTTGCTATACTTGGAGAGATGCCCAAAATTTCAGGAACTGTCGATGTATTTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACAGTTCGTGATAACATACTCTATGGGAAGCCAATGGACAAGAACAAATATGAGAAGACTATAAAAGCTTGTGCTTTGGATAAGGACATAAATAGCCAGAGGGGAATTAACATGAGTGGAGGGCAAAAGCAAAGGATTCAGCTGGCCCGAGCTGTCTATAGTGATGCTGATATCTACCTCCTAGATGACCCATTCAGTGCAGTAGATGCACACACTGCCGCAATTCTGTTTCATGATTGTGTCATGGATGCTCTAGCAAAGAAGACTGTGATTCTCGTGACTCATCAAGTCGAATTTCTGTCAGAAGTTGACAAAATTCTGGTAATGGAGCGCGGACAAGTTACTCAATCCGGAAGCTATGAGAGTCTCTTGACTGCTGGAACAGCATTTGAGCAACTGGTGAATGCTCATAGAGATGCAGTAACTACATTAGGTCCTTCAAATAATCAAAGCCAAGTAGAACTGGAAAAGACAGATATGATCCGGCATGAGGAGTCTGTAACTAATCTCACTAGATACAGCAGTGAAGGGGACACTTCTGTGAAGGCTTCACCCACAGTGCAACTAACAGAAGATGAAGAAAAAGAGATTGGTGATGTTGGATGGAAGCCCTTCTGGGATTACATTTTTGTTTCCAAGGGAACACTTCTGCTAGCAATAGGCATAATGGCACAGGCCGGTTTTGTTTGTTTTCAGGCTGGTTCAACTTATTGGCTGGCTCTCGCCATTCAAAATCCTAGTATAACTAGTCTTACACTTGTCGGTGTCTACACTGCAATCTCAACACTCAGTGCTGTATTTGTCTATCTGAGGTCAACCTTTGCAGCACATCTGGGACTAAGAGCTTCTAGAACATTTTTTGATGGTTTCACAGATGCCATCTTTAAGGCTCCCATGTTGTTCTTTGACTCAACTCCTGTAGGGAGGATTTTGACACGAGCTTCATCAGATTTAAGTATCTTGGATTTTGACATACCTTTCTCCATTATCTTTGTTGTGTCTGCTGGTATGGAATTGCTGACATGGATTGGAATAATGGCTTCTGTCACATGGCAAGTTCTCATTGTAGCCGTTCTCACCATGGTTGCTTCAAAATATGTTCAGAGCTACTATCAAGCGTCTGCAAGGGAACTAATAAGAATTAATGGAACAACCAAAGCTCCTGTTATGAATTATGCAGCCGAGACATCACTTGGAGTGGTCACTATCAGAGCTTTTAAAATGGCTGACACGTTCTTCCAAAAGTACCTAGAGCTAGTTGACACAGATGCAAGACTGTTCTTTCATTCGAATGCAACAATGGAGTGGTTAATTATAAGAACAGAAGCACTTCAAAATGTGACTCTTTTTGTTGCTGCTTTTCTCCTTATTTCACTTCCCAAGGGTTATGTTGCTCCAGGGCTTGTGGGGCTTTCTCTTTCTTATGCTTTGACACTAACAATGACACAAATTTTTGTGATCCGGTGGTATTGTAACTTATCAAACTACATCATCTCAGTTGAAAGGATAAAACAGTTCATGCAGATTCCACCAGAGCCTCTGGCTATTGTGGAGGACAAGAGACCACCATCTTCATGGCCTACAAAGGGAAGGATAGAGCTGCATTCTCTCAAGATAAAATATCGTCCAAATGCTCCACTGGTTCTCAAGGGAATTTCATGCACATTCAAAGAAGGGACTAGAGTAGGAGTTGTGGGAAGGACAGGAAGCGGAAAGACTACACTTATAAGTGCTTTGTTTCGGTTAGTAGAGCCAAACAGCGGTAAAATTATCATAGATGGACTTGACATCTGCTCTATGGGTCTAAAGGATTTAAGAATGAAGCTCAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGTAGCATCAGAACCAACTTGGATCCTCTTGGTCTTTACTCCGATGATGAAATATGGAGGGCTCTAGAGAAGTGTCAGCTGAAGGCAACAGTCAGCAGTCTACCTAATCTGCTAGATTCATCTGTTAGTGATGAAGGGGAAAATTGGAGTGCTGGGCAACGCCAGCTGTTTTGCCTTGGCAGAGTCCTTCTGAAGAGGAACAGAATCCTAGTGCTAGATGAGGCTACTGCTTCCATCGATTCTGCAACAGACGCCGTTCTACAAAGAATCATCAGGCAGGAATTTGCGGAATGCACAGTGATGACGGTTGCTCATAGGGTTCCAACAGTTATAGATAGTGACATGGTCATGGTCCTCTCCTATGGGAAGCTAGTGGAGTATGAAGAACCTTCAAAGCTCTTGGATACCAACTCATACTTCTCCAAGCTTGTAGCTGAATATTGGTCAAGCTGTAGAGAAACTGAACAACAATTTCCAATGCTGCATACAAGACAGACCTGGCTAATATCCAACAGATCACGTGGAAGAGAGCATGTAATTATCTGTTATAGTTTTAGTAATCAATGTAATATTCTTAGCCAAATAATACAAAAGTTTGTAATCTTTATTGTAGAATAA

Protein Analysis

1508

Amino Acids

169.04

Weight (kDa)

8.25

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 24 - 180 4.2e-11 ABCC10 N-terminal domain
ABC_membrane PF00664 293 - 553 4.1e-21 ABC transporter transmembrane region
ABC_tran PF00005 624 - 748 3.9e-19 ABC transporter
ABC_membrane PF00664 920 - 1165 1.3e-24 ABC transporter transmembrane region
ABC_tran PF00005 1232 - 1380 2.8e-26 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 3365, 3776
AccB1I GGYRCC 1 cut(s) 999
AccI GTMKAC 3 cut(s) 605, 2817, 4009
AccII CGCG 1 cut(s) 2382
AccIII TCCGGA 1 cut(s) 2399
AciI CCGC 6 cut(s) 1323, 2268, 2382, 3759, 3810, 4196
AclWI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2524, 3502, 3926, 3939
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 4 cut(s) 738, 1340, 4010, 4121
AcvI CACGTG 1 cut(s) 4430
AcyI GRCGYC 1 cut(s) 4161
AdeI CACNNNGTG 1 cut(s) 2840
AfaI GTAC 4 cut(s) 24, 820, 1633, 3296
AfiI CCNNNNNNNGG 6 cut(s) 798, 799, 1720, 2539, 3635, 3809
AflIII ACRYGT 1 cut(s) 3279
AhlI ACTAGT 2 cut(s) 334, 2795
AjnI CCWGG 4 cut(s) 828, 1451, 3445, 4406
AjuI GAANNNNNNNTTGG 6 cut(s) 48, 80, 2622, 2654, 4310, 4342
AleI CACNNNNGTG 1 cut(s) 2588
Alw21I GWGCWC 3 cut(s) 229, 812, 1294
Alw26I GTCTC 6 cut(s) 436, 1033, 1729, 2420, 3227, 3604
AlwI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2524, 3502, 3926, 3939
AlwNI CAGNNNCTG 1 cut(s) 1991
Ama87I CYCGRG 1 cut(s) 2196
Aor13HI TCCGGA 1 cut(s) 2399
AoxI GGCC 5 cut(s) 497, 982, 2193, 2724, 3626
ApeKI GCWGC 6 cut(s) 1114, 2873, 3227, 3404, 3649, 4390
ArsI GACNNNNNNTTYG 2 cut(s) 1461, 1493
AseI ATTAAT 2 cut(s) 96, 3192
Asp700I GAANNNNTTC 2 cut(s) 2660, 3378
AspLEI GCGC 1 cut(s) 2382
AspS9I GGNCC 4 cut(s) 1922, 2194, 2483, 4261
AsuC2I CCSGG 1 cut(s) 1299
AsuHPI GGTGA 8 cut(s) 1003, 1024, 1554, 1788, 2461, 2592, 2654, 3118
AsuII TTCGAA 1 cut(s) 3338
AsuNHI GCTAGC 1 cut(s) 2701
AvaI CYCGRG 1 cut(s) 2196
AvaII GGWCC 3 cut(s) 1922, 2483, 4261
AxyI CCTNAGG 1 cut(s) 896
BaeI ACNNNNGTAYC 2 cut(s) 2557, 2590
BalI TGGCCA 1 cut(s) 499
BamHI GGATCC 1 cut(s) 3931
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 2 cut(s) 812, 3973
BauI CACGAG 2 cut(s) 2324, 2985
BbrPI CACGTG 1 cut(s) 4430
BbsI GAAGAC 4 cut(s) 726, 1319, 2111, 2318
Bbv12I GWGCWC 3 cut(s) 229, 812, 1294
BbvCI CCTCAGC 1 cut(s) 539
BbvI GCAGC 6 cut(s) 1126, 2885, 3239, 3391, 3636, 4377
BceAI ACGGC 2 cut(s) 3104, 4148
BciT130I CCWGG 4 cut(s) 830, 1453, 3447, 4408
BciVI GTATCC 4 cut(s) 1610, 1857, 2031, 4306
BcnI CCSGG 1 cut(s) 1299
BcoDI GTCTC 6 cut(s) 436, 1033, 1729, 2420, 3227, 3604
BcuI ACTAGT 2 cut(s) 334, 2795
BfmI CTRYAG 3 cut(s) 2206, 2967, 4360
BfuI GTATCC 4 cut(s) 1610, 1857, 2031, 4306
BglII AGATCT 1 cut(s) 1064
BisI GCNGC 7 cut(s) 1115, 2268, 2874, 3228, 3405, 3650, 4391
BlpI GCTNAGC 1 cut(s) 3875
BlsI GCNGC 7 cut(s) 1116, 2269, 2875, 3229, 3406, 3651, 4392
BmcAI AGTACT 1 cut(s) 1633
Bme1390I CCNGG 5 cut(s) 830, 1299, 1453, 3447, 4408
Bme18I GGWCC 3 cut(s) 1922, 2483, 4261
BmeT110I CYCGRG 1 cut(s) 2196
BmgT120I GGNCC 4 cut(s) 1922, 2194, 2483, 4261
BmiI GGNNCC 6 cut(s) 1001, 1217, 2008, 2940, 3933, 4230
BmrFI CCNGG 5 cut(s) 830, 1299, 1453, 3447, 4408
BmrI ACTGGG 1 cut(s) 1366
BmtI GCTAGC 1 cut(s) 2705
BmuI ACTGGG 1 cut(s) 1366
BpiI GAAGAC 4 cut(s) 726, 1319, 2111, 2318
BpmI CTGGAG 1 cut(s) 3429
Bpu10I CCTNAGC 2 cut(s) 539, 650
Bpu1102I GCTNAGC 1 cut(s) 3875
Bpu14I TTCGAA 1 cut(s) 3338
BpuEI CTTGAG 7 cut(s) 762, 796, 1042, 1837, 3644, 3680, 3873
BpuMI CCSGG 1 cut(s) 1299
Bsa29I ATCGAT 1 cut(s) 4146
BsaAI YACGTR 1 cut(s) 4430
BsaHI GRCGYC 1 cut(s) 4161
BsaI GGTCTC 3 cut(s) 436, 1729, 3604
BsaJI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2685, 3129, 3429, 3446, 4084
BsaWI WCCGGW 2 cut(s) 2399, 3510
BsaXI ACNNNNNCTCC 8 cut(s) 697, 727, 779, 809, 1662, 1692, 3193, 3223
Bsc4I CCNNNNNNNGG 6 cut(s) 798, 799, 1720, 2539, 3635, 3809
Bse118I RCCGGY 2 cut(s) 641, 2726
Bse1I ACTGG 8 cut(s) 238, 500, 1372, 1559, 1925, 2451, 2517, 3693
Bse21I CCTNAGG 1 cut(s) 896
Bse3DI GCAATG 2 cut(s) 643, 1238
BseAI TCCGGA 1 cut(s) 2399
BseBI CCWGG 4 cut(s) 830, 1453, 3447, 4408
BseCI ATCGAT 1 cut(s) 4146
BseDI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2685, 3129, 3429, 3446, 4084
BseGI GGATG 5 cut(s) 182, 1563, 2302, 2657, 3882
BseLI CCNNNNNNNGG 6 cut(s) 798, 799, 1720, 2539, 3635, 3809
BseMI GCAATG 2 cut(s) 643, 1238
BseNI ACTGG 8 cut(s) 238, 500, 1372, 1559, 1925, 2451, 2517, 3693
BseRI GAGGAG 3 cut(s) 912, 977, 2555
BseXI GCAGC 6 cut(s) 1126, 2885, 3239, 3391, 3636, 4377
BseYI CCCAGC 2 cut(s) 1154, 4061
BsgI GTGCAG 2 cut(s) 61, 2268
Bsh1236I CGCG 1 cut(s) 2382
BshFI GGCC 5 cut(s) 499, 984, 2195, 2726, 3628
BshNI GGYRCC 1 cut(s) 999
BshVI ATCGAT 1 cut(s) 4146
BsiHKAI GWGCWC 3 cut(s) 229, 812, 1294
BsiHKCI CYCGRG 1 cut(s) 2196
BsiSI CCGG 6 cut(s) 642, 1298, 2400, 2533, 2727, 3511
BslFI GGGAC 8 cut(s) 775, 1354, 1533, 1601, 2062, 2594, 2898, 3739
BslI CCNNNNNNNGG 6 cut(s) 798, 799, 1720, 2539, 3635, 3809
BsmAI GTCTC 6 cut(s) 436, 1033, 1729, 2420, 3227, 3604
BsmFI GGGAC 8 cut(s) 775, 1354, 1533, 1601, 2062, 2594, 2898, 3739
BsmI GAATGC 6 cut(s) 890, 1630, 2458, 3346, 3652, 4205
BsnI GGCC 5 cut(s) 499, 984, 2195, 2726, 3628
Bso31I GGTCTC 3 cut(s) 436, 1729, 3604
BsoBI CYCGRG 1 cut(s) 2196
Bsp119I TTCGAA 1 cut(s) 3338
Bsp1286I GDGCHC 4 cut(s) 229, 812, 1294, 3973
Bsp13I TCCGGA 1 cut(s) 2399
Bsp1720I GCTNAGC 1 cut(s) 3875
Bsp19I CCATGG 2 cut(s) 1208, 3129
BspACI CCGC 6 cut(s) 1323, 2268, 2382, 3759, 3810, 4196
BspANI GGCC 5 cut(s) 499, 984, 2195, 2726, 3628
BspDI ATCGAT 1 cut(s) 4146
BspEI TCCGGA 1 cut(s) 2399
BspFNI CGCG 1 cut(s) 2382
BspHI TCATGA 3 cut(s) 553, 1377, 2281
BspLI GGNNCC 6 cut(s) 1001, 1217, 2008, 2940, 3933, 4230
BspOI GCTAGC 1 cut(s) 2705
BspPI GGATC 9 cut(s) 38, 392, 680, 1411, 1705, 2524, 3502, 3926, 3939
BspT104I TTCGAA 1 cut(s) 3338
BspT107I GGYRCC 1 cut(s) 999
BspTNI GGTCTC 3 cut(s) 436, 1729, 3604
BsrDI GCAATG 2 cut(s) 643, 1238
BsrFI RCCGGY 2 cut(s) 641, 2726
BsrI ACTGG 8 cut(s) 238, 500, 1372, 1559, 1925, 2451, 2517, 3693
BssAI RCCGGY 2 cut(s) 641, 2726
BssECI CCNNGG 9 cut(s) 960, 979, 1208, 1452, 2685, 3129, 3429, 3446, 4084
BssNI GRCGYC 1 cut(s) 4161
BssSI CACGAG 2 cut(s) 2324, 2985
BssT1I CCWWGG 6 cut(s) 979, 1208, 2685, 3129, 3429, 4084
Bst2BI CACGAG 2 cut(s) 2324, 2985
Bst2UI CCWGG 4 cut(s) 830, 1453, 3447, 4408
Bst6I CTCTTC 5 cut(s) 119, 1452, 1582, 4097, 4429
BstACI GRCGYC 1 cut(s) 4161
BstAPI GCANNNNNTGC 3 cut(s) 1184, 2255, 2264
BstBAI YACGTR 1 cut(s) 4430
BstBI TTCGAA 1 cut(s) 3338
BstC8I GCNNGC 4 cut(s) 2193, 2703, 2766, 4073
BstDSI CCRYGG 2 cut(s) 1208, 3129
BstF5I GGATG 5 cut(s) 182, 1563, 2302, 2657, 3882
BstFNI CGCG 1 cut(s) 2382
BstHHI GCGC 1 cut(s) 2382
BstMAI GTCTC 6 cut(s) 436, 1033, 1729, 2420, 3227, 3604
BstNI CCWGG 4 cut(s) 830, 1453, 3447, 4408
BstNSI RCATGY 1 cut(s) 4445
BstSCI CCNGG 5 cut(s) 828, 1297, 1451, 3445, 4406
BstSFI CTRYAG 3 cut(s) 2206, 2967, 4360
BstUI CGCG 1 cut(s) 2382
BstV1I GCAGC 6 cut(s) 1126, 2885, 3239, 3391, 3636, 4377
BstV2I GAAGAC 4 cut(s) 726, 1319, 2111, 2318
BstX2I RGATCY 3 cut(s) 1064, 1416, 3931
BstXI CCANNNNNNTGG 2 cut(s) 829, 3624
BstYI RGATCY 3 cut(s) 1064, 1416, 3931
Bsu15I ATCGAT 1 cut(s) 4146
Bsu36I CCTNAGG 1 cut(s) 896
BsuI GTATCC 4 cut(s) 1610, 1857, 2031, 4306
BsuRI GGCC 5 cut(s) 499, 984, 2195, 2726, 3628
BsuTUI ATCGAT 1 cut(s) 4146
BtgI CCRYGG 2 cut(s) 1208, 3129
BtsCI GGATG 5 cut(s) 182, 1563, 2302, 2657, 3882
BtsI GCAGTG 3 cut(s) 2262, 2578, 2820
Cac8I GCNNGC 4 cut(s) 2193, 2703, 2766, 4073
CaiI CAGNNNCTG 1 cut(s) 1991
CciI TCATGA 3 cut(s) 553, 1377, 2281
CfoI GCGC 1 cut(s) 2382
Cfr10I RCCGGY 2 cut(s) 641, 2726
Cfr13I GGNCC 4 cut(s) 1922, 2194, 2483, 4261
ClaI ATCGAT 1 cut(s) 4146
CseI GACGC 2 cut(s) 3156, 4169
CsiI ACCWGGT 1 cut(s) 828
Csp6I GTAC 4 cut(s) 23, 819, 1632, 3295
CviQI GTAC 4 cut(s) 23, 819, 1632, 3295
DraI TTTAAA 1 cut(s) 3268
DraIII CACNNNGTG 1 cut(s) 2840
EaeI YGGCCR 1 cut(s) 497
Eam1104I CTCTTC 5 cut(s) 119, 1452, 1582, 4097, 4429
EarI CTCTTC 5 cut(s) 119, 1452, 1582, 4097, 4429
Ecl136II GAGCTC 1 cut(s) 810
Eco130I CCWWGG 6 cut(s) 979, 1208, 2685, 3129, 3429, 4084
Eco147I AGGCCT 1 cut(s) 984
Eco24I GRGCYC 2 cut(s) 812, 3973
Eco31I GGTCTC 3 cut(s) 436, 1729, 3604
Eco32I GATATC 1 cut(s) 2221
Eco47I GGWCC 3 cut(s) 1922, 2483, 4261
Eco53kI GAGCTC 1 cut(s) 810
Eco57I CTGAAG 4 cut(s) 738, 1340, 4010, 4121
Eco72I CACGTG 1 cut(s) 4430
Eco81I CCTNAGG 1 cut(s) 896
Eco88I CYCGRG 1 cut(s) 2196
EcoICRI GAGCTC 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 2483
EcoRI GAATTC 1 cut(s) 1499
EcoRII CCWGG 4 cut(s) 828, 1451, 3445, 4406
EcoRV GATATC 1 cut(s) 2221
EcoT14I CCWWGG 6 cut(s) 979, 1208, 2685, 3129, 3429, 4084
EcoT22I ATGCAT 1 cut(s) 940
EcoT38I GRGCYC 2 cut(s) 812, 3973
ErhI CCWWGG 6 cut(s) 979, 1208, 2685, 3129, 3429, 4084
FaqI GGGAC 8 cut(s) 775, 1354, 1533, 1601, 2062, 2594, 2898, 3739
FblI GTMKAC 3 cut(s) 605, 2817, 4009
Fnu4HI GCNGC 7 cut(s) 1115, 2268, 2874, 3228, 3405, 3650, 4391
FokI GGATG 5 cut(s) 169, 1570, 2309, 2664, 3869
FriOI GRGCYC 2 cut(s) 812, 3973
Fsp4HI GCNGC 7 cut(s) 1115, 2268, 2874, 3228, 3405, 3650, 4391
GlaI GCGC 1 cut(s) 2381
GluI GCNGC 7 cut(s) 1115, 2268, 2874, 3228, 3405, 3650, 4391
GsaI CCCAGC 2 cut(s) 1158, 4065
GsuI CTGGAG 1 cut(s) 3429
HaeIII GGCC 5 cut(s) 499, 984, 2195, 2726, 3628
HapII CCGG 6 cut(s) 642, 1298, 2400, 2533, 2727, 3511
HgaI GACGC 2 cut(s) 3156, 4169
HhaI GCGC 1 cut(s) 2382
Hin1I GRCGYC 1 cut(s) 4161
Hin6I GCGC 1 cut(s) 2380
HinP1I GCGC 1 cut(s) 2380
HincII GTYRAC 4 cut(s) 1168, 2359, 2865, 3310
HindII GTYRAC 4 cut(s) 1168, 2359, 2865, 3310
HindIII AAGCTT 3 cut(s) 1787, 2115, 4334
HpaI GTTAAC 1 cut(s) 1168
HpaII CCGG 6 cut(s) 642, 1298, 2400, 2533, 2727, 3511
HphI GGTGA 8 cut(s) 1003, 1024, 1554, 1788, 2461, 2592, 2654, 3118
HpyCH4IV ACGT 2 cut(s) 3281, 4429
HpySE526I ACGT 2 cut(s) 3281, 4429
Hsp92I GRCGYC 1 cut(s) 4161
HspAI GCGC 1 cut(s) 2380
Kpn2I TCCGGA 1 cut(s) 2399
KspAI GTTAAC 1 cut(s) 1168
LmnI GCTCC 9 cut(s) 718, 1230, 1662, 1931, 2377, 2944, 3214, 3448, 3688
Lsp1109I GCAGC 6 cut(s) 1126, 2885, 3239, 3391, 3636, 4377
MabI ACCWGGT 1 cut(s) 828
MaeII ACGT 2 cut(s) 3281, 4429
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 3 cut(s) 1064, 1416, 3931
MhlI GDGCHC 4 cut(s) 229, 812, 1294, 3973
MlsI TGGCCA 1 cut(s) 499
MluNI TGGCCA 1 cut(s) 499
MlyI GAGTC 9 cut(s) 797, 1034, 1049, 2323, 2422, 2552, 2951, 3385, 4101
MmeI TCCRAC 5 cut(s) 294, 1909, 2629, 4256, 4443
Mox20I TGGCCA 1 cut(s) 499
Mph1103I ATGCAT 1 cut(s) 940
MroI TCCGGA 1 cut(s) 2399
MroXI GAANNNNTTC 2 cut(s) 2660, 3378
MscI TGGCCA 1 cut(s) 499
MslI CAYNNNNRTG 8 cut(s) 992, 2286, 2463, 2588, 3339, 3622, 4208, 4256
Msp20I TGGCCA 1 cut(s) 499
MspA1I CMGCKG 6 cut(s) 1117, 1154, 2191, 3810, 3988, 4075
MspI CCGG 6 cut(s) 642, 1298, 2400, 2533, 2727, 3511
MspR9I CCNGG 5 cut(s) 830, 1299, 1453, 3447, 4408
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 6 cut(s) 890, 1630, 2458, 3346, 3652, 4205
MvaI CCWGG 4 cut(s) 830, 1453, 3447, 4408
MvnI CGCG 1 cut(s) 2382
NciI CCSGG 1 cut(s) 1299
NcoI CCATGG 2 cut(s) 1208, 3129
NheI GCTAGC 1 cut(s) 2701
NlaIV GGNNCC 6 cut(s) 1001, 1217, 2008, 2940, 3933, 4230
NmeAIII GCCGAG 3 cut(s) 413, 985, 3256
NmuCI GTSAC 6 cut(s) 1560, 2326, 3094, 3250, 3388, 4247
NsiI ATGCAT 1 cut(s) 940
NspI RCATGY 1 cut(s) 4445
NspV TTCGAA 1 cut(s) 3338
OliI CACNNNNGTG 1 cut(s) 2588
PagI TCATGA 3 cut(s) 553, 1377, 2281
PceI AGGCCT 1 cut(s) 984
PctI GAATGC 6 cut(s) 890, 1630, 2458, 3346, 3652, 4205
PdmI GAANNNNTTC 2 cut(s) 2660, 3378
PflFI GACNNNGTC 1 cut(s) 4253
PkrI GCNGC 7 cut(s) 1116, 2269, 2875, 3229, 3406, 3651, 4392
PleI GAGTC 9 cut(s) 796, 1033, 1049, 2323, 2421, 2551, 2951, 3385, 4100
PmaCI CACGTG 1 cut(s) 4430
PmlI CACGTG 1 cut(s) 4430
PpsI GAGTC 9 cut(s) 796, 1033, 1049, 2323, 2421, 2551, 2951, 3385, 4100
Ppu21I YACGTR 1 cut(s) 4430
PpuMI RGGWCCY 1 cut(s) 2483
PshBI ATTAAT 2 cut(s) 96, 3192
PsiI TTATAA 2 cut(s) 3365, 3776
Psp124BI GAGCTC 1 cut(s) 812
Psp5II RGGWCCY 1 cut(s) 2483
Psp6I CCWGG 4 cut(s) 828, 1451, 3445, 4406
PspCI CACGTG 1 cut(s) 4430
PspFI CCCAGC 2 cut(s) 1154, 4061
PspGI CCWGG 4 cut(s) 828, 1451, 3445, 4406
PspN4I GGNNCC 6 cut(s) 1001, 1217, 2008, 2940, 3933, 4230
PspPI GGNCC 4 cut(s) 1922, 2194, 2483, 4261
PspPPI RGGWCCY 1 cut(s) 2483
PstNI CAGNNNCTG 1 cut(s) 1991
PsuI RGATCY 3 cut(s) 1064, 1416, 3931
PsyI GACNNNGTC 1 cut(s) 4253
PvuII CAGCTG 5 cut(s) 1117, 1154, 2191, 3988, 4075
RsaI GTAC 4 cut(s) 24, 820, 1633, 3296
RsaNI GTAC 4 cut(s) 23, 819, 1632, 3295
RseI CAYNNNNRTG 8 cut(s) 992, 2286, 2463, 2588, 3339, 3622, 4208, 4256
SacI GAGCTC 1 cut(s) 812
SatI GCNGC 7 cut(s) 1115, 2268, 2874, 3228, 3405, 3650, 4391
Sau96I GGNCC 4 cut(s) 1922, 2194, 2483, 4261
ScaI AGTACT 1 cut(s) 1633
SchI GAGTC 9 cut(s) 797, 1034, 1049, 2323, 2422, 2552, 2951, 3385, 4101
ScrFI CCNGG 5 cut(s) 830, 1299, 1453, 3447, 4408
SduI GDGCHC 4 cut(s) 229, 812, 1294, 3973
SexAI ACCWGGT 1 cut(s) 828
SfcI CTRYAG 3 cut(s) 2206, 2967, 4360
SfuI TTCGAA 1 cut(s) 3338
SinI GGWCC 3 cut(s) 1922, 2483, 4261
SmiMI CAYNNNNRTG 8 cut(s) 992, 2286, 2463, 2588, 3339, 3622, 4208, 4256
SmlI CTYRAG 7 cut(s) 777, 811, 1057, 1816, 3659, 3695, 3888
SmoI CTYRAG 7 cut(s) 777, 811, 1057, 1816, 3659, 3695, 3888
SpeI ACTAGT 2 cut(s) 334, 2795
SseBI AGGCCT 1 cut(s) 984
SsiI CCGC 6 cut(s) 1323, 2268, 2382, 3759, 3810, 4196
SspI AATATT 2 cut(s) 4349, 4480
SstI GAGCTC 1 cut(s) 812
StuI AGGCCT 1 cut(s) 984
StyD4I CCNGG 5 cut(s) 828, 1297, 1451, 3445, 4406
StyI CCWWGG 6 cut(s) 979, 1208, 2685, 3129, 3429, 4084
TaiI ACGT 2 cut(s) 3284, 4432
TaqI TCGA 6 cut(s) 1023, 1489, 1995, 2340, 3338, 4146
TatI WGTACW 2 cut(s) 22, 1631
TauI GCSGC 1 cut(s) 2270
TseFI GTSAC 6 cut(s) 1560, 2326, 3094, 3250, 3388, 4247
TseI GCWGC 6 cut(s) 1114, 2873, 3227, 3404, 3649, 4390
Tsp45I GTSAC 6 cut(s) 1560, 2326, 3094, 3250, 3388, 4247
Tth111I GACNNNGTC 1 cut(s) 4253
VpaK11BI GGWCC 3 cut(s) 1922, 2483, 4261
VspI ATTAAT 2 cut(s) 96, 3192
XbaI TCTAGA 2 cut(s) 2897, 3973
XceI RCATGY 1 cut(s) 4445
XcmI CCANNNNNNNNNTGG 1 cut(s) 3621
XmiI GTMKAC 3 cut(s) 605, 2817, 4009
XmnI GAANNNNTTC 2 cut(s) 2660, 3378
ZrmI AGTACT 1 cut(s) 1633
Zsp2I ATGCAT 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.