Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

604873 .. 606708

Gene Structure 1836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATATGAGTGTGATTATGAGGTATGGGGATGATAAAGCCGAGGAGTTATGCCTTGAAGTGGAGGATTACTGGGCTCGAGTGGATGAATCCGATGGTTTCGATGTCGAGGGAATCCAAGCACCACCAGGGGGCACTCCATTGATACACTACGACTGTCATCTGCCCAATAGTAGGCATCCTGATCCTGTATTGGTCAAGCTTTATGCTAGTGCGGGGCTTCATCGCTACAATATGTTGGAGGGGACGAACTTCAAGCTCGTTGATGTAATGAAATTCAACAAGTTAATGATGCATTTGTCCCCTTTCTACATAACTTTACTTGCACAAGATCCAGTTAGCCGTTCGCAGCAAACCTTTCAGGTTCAAGTTGATGAACACTGTCTTAGCACTATGGATTTGACGGTTCTAATTGCTAGACCTAAAGCTGTGTCCACCAATGAGTCCGTCTTAGCTCCGCAGAGTTTTTCAGTGGAAGAATCGCCTGAGTGGCCGTCAGATTTCAATGATGGAAAACGATTCTACCGGGTGAAGGAATCTGAGTTGCGTAACAATGATTGGATTTCTCTATATTTGCAACTTGTACTCGTATCACATGATAGGATGAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGGAAGCGGTGATAGAAACCAAGGACGATATGCTGCCGCCGAATGAGAGACTACTCAATGCCAAAACTGCAATTGTGTACATAACTTTTAAGGGCTTCACCAAGTGTCGGATTGGTGATGAGCATACTGAACGCAAAACTATAGTTAGAAGAATATTCGATGAGGATACAGGACACCTTTCTATCAAGGGTGAGTTGATTGGTGAGTACAAGCTTGGAGGGGACTTTGACCCTGGTTGTTATTTCAACTCTCCCGCGATTCTAGAAGCTAGGCGTATTTGTCAGGGCCTGCCGCCACAGCCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

316

Amino Acids

36.07

Weight (kDa)

5.12

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	162 - 276	6.3e-38	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	899
AciI	CCGC	6 cut(s)	215, 458, 650, 680, 897, 935
AclWI	GGATC	2 cut(s)	179, 326
AcoI	YGGCCR	1 cut(s)	491
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	656
AdeI	CACNNNGTG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	585, 722, 851
AfiI	CCNNNNNNNGG	5 cut(s)	61, 131, 174, 532, 750
AgsI	TTSAA	6 cut(s)	59, 256, 280, 368, 505, 889
AjnI	CCWGG	2 cut(s)	127, 874
AluBI	AGCT	7 cut(s)	202, 259, 428, 455, 634, 856, 911
AluI	AGCT	7 cut(s)	202, 259, 428, 455, 634, 856, 911
Alw26I	GTCTC	1 cut(s)	685
AlwI	GGATC	2 cut(s)	179, 326
AlwNI	CAGNNNCTG	1 cut(s)	931
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	491, 928
ApeKI	GCWGC	2 cut(s)	349, 676
ApoI	RAATTY	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	928
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	6 cut(s)	541, 664, 733, 770, 845, 857
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	361, 663
BccI	CCATC	2 cut(s)	89, 503
BceAI	ACGGC	3 cut(s)	327, 478, 928
BciT130I	CCWGG	2 cut(s)	129, 876
BciVI	GTATCC	1 cut(s)	802
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	685
BfaI	CTAG	4 cut(s)	210, 417, 905, 912
BfmI	CTRYAG	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	802
BglI	GCCNNNNNGGC	1 cut(s)	490
BisI	GCNGC	4 cut(s)	350, 677, 680, 935
BlsI	GCNGC	4 cut(s)	351, 678, 681, 936
Bme1390I	CCNGG	3 cut(s)	129, 527, 876
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	928
BmrFI	CCNGG	3 cut(s)	129, 527, 876
BmrI	ACTGGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	187, 282
BmuI	ACTGGG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	527
BsaBI	GATNNNNATC	2 cut(s)	608, 621
BsaJI	CCNNGG	4 cut(s)	42, 128, 663, 874
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 131, 174, 532, 750
Bse1I	ACTGG	2 cut(s)	77, 335
Bse8I	GATNNNNATC	2 cut(s)	608, 621
BseBI	CCWGG	2 cut(s)	129, 876
BseDI	CCNNGG	4 cut(s)	42, 128, 663, 874
BseGI	GGATG	4 cut(s)	37, 91, 178, 609
BseJI	GATNNNNATC	2 cut(s)	608, 621
BseLI	CCNNNNNNNGG	5 cut(s)	61, 131, 174, 532, 750
BseMII	CTCAG	3 cut(s)	477, 531, 627
BseNI	ACTGG	2 cut(s)	77, 335
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	361, 663
Bsh1236I	CGCG	1 cut(s)	899
BshFI	GGCC	2 cut(s)	493, 930
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	526
BslFI	GGGAC	3 cut(s)	259, 286, 878
BslI	CCNNNNNNNGG	5 cut(s)	61, 131, 174, 532, 750
BsmAI	GTCTC	1 cut(s)	685
BsmFI	GGGAC	3 cut(s)	259, 286, 878
BsnI	GGCC	2 cut(s)	493, 930
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	79, 137
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	184, 331, 622
BspACI	CCGC	6 cut(s)	215, 458, 650, 680, 897, 935
BspANI	GGCC	2 cut(s)	493, 930
BspCNI	CTCAG	3 cut(s)	478, 532, 626
BspFNI	CGCG	1 cut(s)	899
BspPI	GGATC	2 cut(s)	179, 326
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	77, 335
BssECI	CCNNGG	4 cut(s)	42, 128, 663, 874
BssMI	GATC	3 cut(s)	184, 331, 622
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	129, 876
Bst4CI	ACNGT	3 cut(s)	158, 383, 406
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	932
BstDEI	CTNAG	5 cut(s)	386, 451, 486, 540, 613
BstF5I	GGATG	4 cut(s)	37, 91, 178, 609
BstFNI	CGCG	1 cut(s)	899
BstKTI	GATC	3 cut(s)	187, 334, 625
BstMAI	GTCTC	1 cut(s)	685
BstMBI	GATC	3 cut(s)	184, 331, 622
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 710, 940
BstNI	CCWGG	2 cut(s)	129, 876
BstSCI	CCNGG	3 cut(s)	127, 525, 874
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	137
BstUI	CGCG	1 cut(s)	899
BstV1I	GCAGC	2 cut(s)	361, 663
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	802
BsuRI	GGCC	2 cut(s)	493, 930
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	4 cut(s)	37, 91, 178, 609
BtsIMutI	CAGTG	2 cut(s)	379, 477
Cac8I	GCNNGC	1 cut(s)	932
CaiI	CAGNNNCTG	1 cut(s)	931
Cfr13I	GGNCC	1 cut(s)	928
Csp6I	GTAC	3 cut(s)	584, 721, 850
CviAII	CATG	1 cut(s)	596
CviQI	GTAC	3 cut(s)	584, 721, 850
DdeI	CTNAG	5 cut(s)	386, 451, 486, 540, 613
DpnI	GATC	3 cut(s)	186, 333, 624
DpnII	GATC	3 cut(s)	184, 331, 622
DraIII	CACNNNGTG	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	663
Eco24I	GRGCYC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	928
EcoRII	CCWGG	2 cut(s)	127, 874
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	1 cut(s)	599
FaqI	GGGAC	3 cut(s)	259, 286, 878
FatI	CATG	1 cut(s)	595
FauI	CCCGC	2 cut(s)	208, 904
Fnu4HI	GCNGC	4 cut(s)	350, 677, 680, 935
FokI	GGATG	4 cut(s)	44, 98, 165, 616
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	4 cut(s)	350, 677, 680, 935
FspBI	CTAG	4 cut(s)	210, 417, 905, 912
GluI	GCNGC	4 cut(s)	350, 677, 680, 935
HaeIII	GGCC	2 cut(s)	493, 930
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	1 cut(s)	599
HindIII	AAGCTT	2 cut(s)	200, 854
HinfI	GANTC	8 cut(s)	89, 114, 443, 479, 519, 536, 609, 901
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	6 cut(s)	541, 664, 733, 770, 845, 857
Hpy166II	GTNNAC	2 cut(s)	435, 721
Hpy188I	TCNGA	5 cut(s)	94, 499, 541, 616, 753
Hpy188III	TCNNGA	2 cut(s)	182, 905
Hpy8I	GTNNAC	2 cut(s)	435, 721
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	3 cut(s)	158, 383, 406
HpyCH4V	TGCA	4 cut(s)	295, 326, 577, 713
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 710, 940
HpyF3I	CTNAG	5 cut(s)	386, 451, 486, 540, 613
Hsp92II	CATG	1 cut(s)	599
Kzo9I	GATC	3 cut(s)	184, 331, 622
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	361, 663
LweI	GCATC	2 cut(s)	187, 282
MaeI	CTAG	4 cut(s)	210, 417, 905, 912
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	3 cut(s)	186, 333, 624
MboI	GATC	3 cut(s)	184, 331, 622
MboII	GAAGA	3 cut(s)	488, 649, 804
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	79, 137
MluCI	AATT	3 cut(s)	275, 411, 714
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	219, 731
MnlI	CCTC	7 cut(s)	15, 37, 58, 103, 235, 799, 854
Mph1103I	ATGCAT	1 cut(s)	297
MseI	TTAA	2 cut(s)	287, 732
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	3 cut(s)	129, 527, 876
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	2 cut(s)	129, 876
MvnI	CGCG	1 cut(s)	899
MwoI	GCNNNNNNNGC	3 cut(s)	490, 710, 940
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	3 cut(s)	184, 331, 622
NlaIII	CATG	1 cut(s)	599
NmeAIII	GCCGAG	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	78
PfeI	GAWTC	7 cut(s)	89, 114, 479, 519, 536, 609, 901
PkrI	GCNGC	4 cut(s)	351, 678, 681, 936
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	2 cut(s)	127, 874
PspGI	CCWGG	2 cut(s)	127, 874
PspPI	GGNCC	1 cut(s)	928
PspXI	VCTCGAGB	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	931
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	3 cut(s)	585, 722, 851
RsaNI	GTAC	3 cut(s)	584, 721, 850
SaqAI	TTAA	2 cut(s)	287, 732
SatI	GCNGC	4 cut(s)	350, 677, 680, 935
Sau3AI	GATC	3 cut(s)	184, 331, 622
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	129, 527, 876
SduI	GDGCHC	2 cut(s)	79, 137
SfaNI	GCATC	2 cut(s)	187, 282
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	275, 411, 714
SsiI	CCGC	6 cut(s)	215, 458, 650, 680, 897, 935
SspI	AATATT	1 cut(s)	798
SspMI	CTAG	4 cut(s)	210, 417, 905, 912
StyD4I	CCNGG	3 cut(s)	127, 525, 874
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	3 cut(s)	158, 383, 406
TaqI	TCGA	4 cut(s)	79, 102, 108, 801
TasI	AATT	3 cut(s)	275, 411, 714
TatI	WGTACW	3 cut(s)	583, 720, 849
TauI	GCSGC	2 cut(s)	682, 937
TfiI	GAWTC	7 cut(s)	89, 114, 479, 519, 536, 609, 901
Tru1I	TTAA	2 cut(s)	287, 732
Tru9I	TTAA	2 cut(s)	287, 732
TscAI	CASTG	2 cut(s)	386, 477
TseI	GCWGC	2 cut(s)	349, 676
TspDTI	ATGAA	4 cut(s)	102, 212, 287, 390
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	2 cut(s)	386, 477
XapI	RAATTY	1 cut(s)	275
XbaI	TCTAGA	1 cut(s)	904
XhoI	CTCGAG	1 cut(s)	78
XspI	CTAG	4 cut(s)	210, 417, 905, 912
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.