Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

6582066 .. 6583601

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATTGGACCATGATTTCGGGGTCTAGAGATGAAAGTCTCCATGCGGCGAGGGATTACTGGCGTCGACTGAATGAATCCGAGTGTTTCGATATCGAGGGAATCGAAGCACCACCAGGTGCCATTGCACTGATACCCTACGACTGTCAACTGCCTAATAGTTTCCATCCTCTTCCTCTCTGGGTCAAGCTTTATGCTAGTGCGGGGCTTCATCGATTCAATATGTTGGAGGTTCTAGTTAATGAACGAAGTGTCGGCAAGTTGAATATAATCGTTCCGATTGCTAGACCTAAAGGTGTGACCACCAACGAGCGCTTCATACCTTGTGATTGTTTTTCAGTGGATGATAAGTTGCCTCAGTGGCCGTCACATGATTCTTTCAATGATAGAAAACGATTTTACTCGGTGAAGGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGTACTCTGTGCAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAAGCGGTGATAGAAACCAAGGAAGATATGGTGCCCCCAAATGAGAGACTCAACGCCAAAACTGCAGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCGTATTGCTGCTGGTGAGCATTATGAACGTAAAGCTATCATTAGAAGAATCTTCAATGAGCATACAGGTCACTTGTCTCTCCTTGGTGATTTGATTGGAGAGAAAAAGTTCGTAAACATTGACCCTGTTACTTATTTCAACTCTCCCGCGTATCTAGAAGACATCACTCACGAGCTGCCGCCGGAGTCGCCCTGGATGGATATTTTGGCGGGAACAGGGTCCATGGATCAGATAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

287

Amino Acids

32.73

Weight (kDa)

5.44

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	118 - 235	5.4e-43	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 553
AccI	GTMKAC	2 cut(s)	67, 594
AccII	CGCG	1 cut(s)	773
AciI	CCGC	6 cut(s)	47, 203, 527, 771, 803, 833
AclWI	GGATC	1 cut(s)	858
AcoI	YGGCCR	2 cut(s)	362, 615
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	64
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	462
AfeI	AGCGCT	1 cut(s)	314
AgsI	TTSAA	6 cut(s)	220, 265, 382, 476, 679, 763
AjnI	CCWGG	2 cut(s)	115, 815
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	4 cut(s)	190, 511, 659, 799
AluI	AGCT	4 cut(s)	190, 511, 659, 799
Alw26I	GTCTC	3 cut(s)	44, 562, 705
AlwI	GGATC	1 cut(s)	858
Aor51HI	AGCGCT	1 cut(s)	314
AoxI	GGCC	2 cut(s)	362, 615
ApeKI	GCWGC	2 cut(s)	632, 799
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AseI	ATTAAT	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	2 cut(s)	9, 843
AsuHPI	GGTGA	4 cut(s)	418, 541, 650, 722
AvaII	GGWCC	2 cut(s)	9, 843
BaeGI	GKGCMC	1 cut(s)	558
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	2 cut(s)	119, 553
BauI	CACGAG	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	789
BbvI	GCAGC	2 cut(s)	619, 786
BccI	CCATC	2 cut(s)	174, 814
BceAI	ACGGC	1 cut(s)	349
BciT130I	CCWGG	2 cut(s)	117, 817
BcoDI	GTCTC	3 cut(s)	44, 562, 705
BfaI	CTAG	5 cut(s)	27, 198, 236, 285, 779
BfmI	CTRYAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	361
BisI	GCNGC	4 cut(s)	48, 633, 800, 803
BlsI	GCNGC	4 cut(s)	49, 634, 801, 804
Bme1390I	CCNGG	2 cut(s)	117, 817
Bme18I	GGWCC	2 cut(s)	9, 843
BmgT120I	GGNCC	2 cut(s)	9, 843
BmiI	GGNNCC	3 cut(s)	121, 555, 844
BmrFI	CCNGG	2 cut(s)	117, 817
BpiI	GAAGAC	1 cut(s)	789
Bsa29I	ATCGAT	1 cut(s)	214
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	540, 706, 815, 846
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	123
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	117, 817
BseCI	ATCGAT	1 cut(s)	214
BseDI	CCNNGG	4 cut(s)	540, 706, 815, 846
BseGI	GGATG	3 cut(s)	166, 349, 825
BseJI	GATNNNNATC	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	371, 504
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	2 cut(s)	619, 786
Bsh1236I	CGCG	1 cut(s)	773
BshFI	GGCC	2 cut(s)	364, 617
BshNI	GGYRCC	2 cut(s)	119, 553
BshVI	ATCGAT	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	806
BsmAI	GTCTC	3 cut(s)	44, 562, 705
BsnI	GGCC	2 cut(s)	364, 617
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	499, 850
Bsp19I	CCATGG	1 cut(s)	846
BspACI	CCGC	6 cut(s)	47, 203, 527, 771, 803, 833
BspANI	GGCC	2 cut(s)	364, 617
BspCNI	CTCAG	2 cut(s)	370, 503
BspDI	ATCGAT	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	773
BspLI	GGNNCC	3 cut(s)	121, 555, 844
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	858
BspT107I	GGYRCC	2 cut(s)	119, 553
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	4 cut(s)	540, 706, 815, 846
BssMI	GATC	2 cut(s)	499, 850
BssNI	GRCGYC	1 cut(s)	64
BssSI	CACGAG	1 cut(s)	794
BssT1I	CCWWGG	3 cut(s)	540, 706, 846
Bst2BI	CACGAG	1 cut(s)	794
Bst2UI	CCWGG	2 cut(s)	117, 817
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	357, 490
BstDSI	CCRYGG	1 cut(s)	846
BstF5I	GGATG	3 cut(s)	166, 349, 825
BstFNI	CGCG	1 cut(s)	773
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	2 cut(s)	502, 853
BstMAI	GTCTC	3 cut(s)	44, 562, 705
BstMBI	GATC	2 cut(s)	499, 850
BstMWI	GCNNNNNNNGC	4 cut(s)	361, 584, 629, 811
BstNI	CCWGG	2 cut(s)	117, 817
BstSCI	CCNGG	2 cut(s)	115, 815
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	1 cut(s)	773
BstV1I	GCAGC	2 cut(s)	619, 786
BstV2I	GAAGAC	1 cut(s)	789
Bsu15I	ATCGAT	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	364, 617
BsuTUI	ATCGAT	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	846
BtsCI	GGATG	3 cut(s)	166, 349, 825
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	4 cut(s)	128, 345, 365, 594
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	9, 843
ClaI	ATCGAT	1 cut(s)	214
CseI	GACGC	1 cut(s)	53
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	4 cut(s)	13, 44, 371, 847
CviJI	RGCY	7 cut(s)	190, 208, 364, 511, 617, 659, 799
CviKI_1	RGCY	7 cut(s)	190, 208, 364, 511, 617, 659, 799
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	2 cut(s)	357, 490
DpnI	GATC	2 cut(s)	501, 852
DpnII	GATC	2 cut(s)	499, 850
DraIII	CACNNNGTG	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	362, 615
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco130I	CCWWGG	3 cut(s)	540, 706, 846
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	9, 843
Eco47III	AGCGCT	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	115, 815
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	540, 706, 846
ErhI	CCWWGG	3 cut(s)	540, 706, 846
FaeI	CATG	4 cut(s)	16, 47, 374, 850
FatI	CATG	4 cut(s)	12, 43, 370, 846
FauI	CCCGC	3 cut(s)	196, 778, 826
FblI	GTMKAC	2 cut(s)	67, 594
Fnu4HI	GCNGC	4 cut(s)	48, 633, 800, 803
FokI	GGATG	3 cut(s)	153, 356, 832
Fsp4HI	GCNGC	4 cut(s)	48, 633, 800, 803
FspBI	CTAG	5 cut(s)	27, 198, 236, 285, 779
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	48, 633, 800, 803
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	364, 617
HapII	CCGG	1 cut(s)	806
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	4 cut(s)	16, 47, 374, 850
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	68, 149
HindII	GTYRAC	2 cut(s)	68, 149
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	9 cut(s)	77, 102, 216, 374, 413, 486, 570, 672, 809
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	4 cut(s)	418, 541, 650, 722
Hpy166II	GTNNAC	4 cut(s)	68, 149, 595, 739
Hpy188I	TCNGA	6 cut(s)	82, 279, 418, 485, 493, 855
Hpy188III	TCNNGA	3 cut(s)	27, 779, 794
Hpy8I	GTNNAC	4 cut(s)	68, 149, 595, 739
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	652
HpyCH4V	TGCA	4 cut(s)	128, 424, 470, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	361, 584, 629, 811
HpyF3I	CTNAG	2 cut(s)	357, 490
HpySE526I	ACGT	1 cut(s)	652
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	16, 47, 374, 850
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	499, 850
Lsp1109I	GCAGC	2 cut(s)	619, 786
MabI	ACCWGGT	1 cut(s)	115
MaeI	CTAG	5 cut(s)	27, 198, 236, 285, 779
MaeII	ACGT	1 cut(s)	652
MaeIII	GTNAC	4 cut(s)	298, 366, 692, 751
MalI	GATC	2 cut(s)	501, 852
MboI	GATC	2 cut(s)	499, 850
MboII	GAAGA	6 cut(s)	164, 526, 557, 667, 681, 794
MhlI	GDGCHC	1 cut(s)	558
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	2 cut(s)	419, 471
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	3 cut(s)	422, 564, 818
MmeI	TCCRAC	2 cut(s)	207, 396
MnlI	CCTC	6 cut(s)	45, 91, 180, 186, 223, 366
Mox20I	TGGCCA	1 cut(s)	617
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	4 cut(s)	240, 441, 606, 862
Msp20I	TGGCCA	1 cut(s)	617
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	2 cut(s)	117, 817
MvaI	CCWGG	2 cut(s)	117, 817
MvnI	CGCG	1 cut(s)	773
MwoI	GCNNNNNNNGC	4 cut(s)	361, 584, 629, 811
NcoI	CCATGG	1 cut(s)	846
NdeII	GATC	2 cut(s)	499, 850
NlaIII	CATG	4 cut(s)	16, 47, 374, 850
NlaIV	GGNNCC	3 cut(s)	121, 555, 844
NmuCI	GTSAC	3 cut(s)	298, 366, 692
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	6 cut(s)	77, 102, 216, 374, 486, 672
PkrI	GCNGC	4 cut(s)	49, 634, 801, 804
PleI	GAGTC	3 cut(s)	421, 564, 817
PpsI	GAGTC	3 cut(s)	421, 564, 817
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	2 cut(s)	115, 815
PspGI	CCWGG	2 cut(s)	115, 815
PspN4I	GGNNCC	3 cut(s)	121, 555, 844
PspPI	GGNCC	2 cut(s)	9, 843
PstI	CTGCAG	1 cut(s)	589
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
SalI	GTCGAC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	240, 441, 606, 862
SatI	GCNGC	4 cut(s)	48, 633, 800, 803
Sau3AI	GATC	2 cut(s)	499, 850
Sau96I	GGNCC	2 cut(s)	9, 843
SchI	GAGTC	3 cut(s)	422, 564, 818
ScrFI	CCNGG	2 cut(s)	117, 817
SduI	GDGCHC	1 cut(s)	558
SexAI	ACCWGGT	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	2 cut(s)	9, 843
Sse9I	AATT	2 cut(s)	419, 471
SsiI	CCGC	6 cut(s)	47, 203, 527, 771, 803, 833
SspMI	CTAG	5 cut(s)	27, 198, 236, 285, 779
StyD4I	CCNGG	2 cut(s)	115, 815
StyI	CCWWGG	3 cut(s)	540, 706, 846
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	655
TaqI	TCGA	5 cut(s)	67, 90, 96, 105, 214
TasI	AATT	2 cut(s)	419, 471
TatI	WGTACW	1 cut(s)	460
TauI	GCSGC	2 cut(s)	50, 805
TfiI	GAWTC	6 cut(s)	77, 102, 216, 374, 486, 672
Tru1I	TTAA	4 cut(s)	240, 441, 606, 862
Tru9I	TTAA	4 cut(s)	240, 441, 606, 862
TscAI	CASTG	4 cut(s)	135, 345, 365, 594
TseFI	GTSAC	3 cut(s)	298, 366, 692
TseI	GCWGC	2 cut(s)	632, 799
Tsp45I	GTSAC	3 cut(s)	298, 366, 692
TspDTI	ATGAA	6 cut(s)	48, 90, 200, 258, 307, 663
TspRI	CASTG	4 cut(s)	135, 345, 365, 594
VpaK11BI	GGWCC	2 cut(s)	9, 843
VspI	ATTAAT	1 cut(s)	441
XbaI	TCTAGA	2 cut(s)	26, 778
XcmI	CCANNNNNNNNNTGG	2 cut(s)	547, 586
XmiI	GTMKAC	2 cut(s)	67, 594
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	5 cut(s)	27, 198, 236, 285, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.