Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Forward (+)

6772570 .. 6775445

Gene Structure 2876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACGTCTCTGTCGGTAAATGATCGGAAGGATTTTGTAGATGGGCAGATGAAGTACTGGCGTCAAATAGCCGAATCCGATGGTTTCGATATCGATGATGTTCCAGTACCAAGAGGAACCAGAGCTGGACTGTGGTCTGTCGACTGTAAACACCCACGTTTTAGGCTTAGGGCTTGTTTACCCAAGATTTATGCTATGGTTGGTCTTCACCGTTACAATTTGCTCAGGGGGACAAACTTCGAGCACCTTGAGTTACTAAAATACAACGAGTCAATGAACTGTGTGTGCTCTTACTATATAACTTCGGTTGCAGTAGATCTTTCTAGCCAGTTGCAGAAAACTTTTCAGATTCGAGTTGATGAAAAAAGTTTTGGAGATTTGGATTTGACGGTCTCTGTTGCTAGACCTAATGATGAAGAGAAAGTGACCACCGAGAAGCGTTTCATACATCACTTTCATTGTGAAGCAGCTGCGGATGATTTCTACAAAGGTGCATTGCCTGATTGGCCGTCAGTTGGTGATCTGAATAATCAAAAACGATTTTACATGGTGAAGAAATGCGAGTTGCAATCCAATGATTGGATCCGTCTATATTTGGAACTTGCAGTTGGTGTACGTTATCAGCAGACTTCAGAGAGTGATCTGTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAGGAAGAAGATGTGCAGCCACCGAATAGGAGACTCAAGTCCAAAAGTCTACATGTCTACATAACGTTTAAGGGCTTGGCCAAGGCTCCTATTGGTGATGAGATTGGTGAGCATGTTGAACGCAAAGCTATAGTTCGAAGAGTCATTGATGAGCGTTCAGGACACTTGACGCTTCTCGGTGGGTTTTCCAATGCGAAAAATGATTTGAATCAGTCCTCTGACGATGAGCAGCCTTTTGGAAAGCGACGTCGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

312

Amino Acids

35.95

Weight (kDa)

8.12

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	166 - 296	6.1e-37	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AatII	GACGTC	2 cut(s)	8, 931
Acc36I	ACCTGC	1 cut(s)	646
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccI	GTMKAC	3 cut(s)	141, 730, 738
AciI	CCGC	1 cut(s)	473
AclI	AACGTT	1 cut(s)	746
AclWI	GGATC	2 cut(s)	577, 590
AcoI	YGGCCR	2 cut(s)	506, 759
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	3 cut(s)	5, 61, 928
AfaI	GTAC	3 cut(s)	56, 108, 615
AfiI	CCNNNNNNNGG	2 cut(s)	515, 579
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	2 cut(s)	800, 889
AjuI	GAANNNNNNNTTGG	4 cut(s)	354, 386, 591, 623
AluBI	AGCT	3 cut(s)	125, 470, 809
AluI	AGCT	3 cut(s)	125, 470, 809
Alw21I	GWGCWC	2 cut(s)	246, 290
Alw26I	GTCTC	3 cut(s)	12, 397, 706
AlwI	GGATC	2 cut(s)	577, 590
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	2 cut(s)	506, 759
ApeKI	GCWGC	4 cut(s)	467, 470, 697, 910
Asp700I	GAANNNNTTC	1 cut(s)	440
AsuHPI	GGTGA	5 cut(s)	200, 530, 562, 788, 800
AsuII	TTCGAA	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	761
BamHI	GGATCC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	2 cut(s)	246, 290
BbvI	GCAGC	4 cut(s)	457, 479, 709, 922
BccI	CCATC	2 cut(s)	35, 74
BceAI	ACGGC	1 cut(s)	493
BcoDI	GTCTC	3 cut(s)	12, 397, 706
BfaI	CTAG	2 cut(s)	324, 402
BfmI	CTRYAG	1 cut(s)	810
BfuAI	ACCTGC	1 cut(s)	646
BglI	GCCNNNNNGGC	1 cut(s)	505
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	4 cut(s)	468, 471, 698, 911
BlsI	GCNGC	4 cut(s)	469, 472, 699, 912
BmcAI	AGTACT	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	118, 584, 768
BoxI	GACNNNNGTC	2 cut(s)	133, 718
BpiI	GAAGAC	1 cut(s)	197
Bpu10I	CCTNAGC	2 cut(s)	167, 224
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	2 cut(s)	269, 701
Bsa29I	ATCGAT	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	888
BsaHI	GRCGYC	3 cut(s)	5, 61, 928
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	2 cut(s)	515, 579
Bse1I	ACTGG	3 cut(s)	62, 104, 328
Bse3DI	GCAATG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	762
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	2 cut(s)	515, 579
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	238
BseNI	ACTGG	3 cut(s)	62, 104, 328
BseXI	GCAGC	4 cut(s)	457, 479, 709, 922
BsgI	GTGCAG	1 cut(s)	716
BshFI	GGCC	2 cut(s)	508, 761
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	246, 290
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	515, 579
BsmAI	GTCTC	3 cut(s)	12, 397, 706
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	508, 761
Bso31I	GGTCTC	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	246, 290
Bsp143I	GATC	5 cut(s)	22, 316, 520, 582, 640
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	2 cut(s)	508, 761
BspCNI	CTCAG	1 cut(s)	237
BspDI	ATCGAT	1 cut(s)	93
BspLI	GGNNCC	3 cut(s)	118, 584, 768
BspMI	ACCTGC	1 cut(s)	646
BspPI	GGATC	2 cut(s)	577, 590
BspT104I	TTCGAA	1 cut(s)	817
BspTNI	GGTCTC	1 cut(s)	397
BsrDI	GCAATG	1 cut(s)	494
BsrI	ACTGG	3 cut(s)	62, 104, 328
BssECI	CCNNGG	1 cut(s)	762
BssMI	GATC	5 cut(s)	22, 316, 520, 582, 640
BssNI	GRCGYC	3 cut(s)	5, 61, 928
BssT1I	CCWWGG	1 cut(s)	762
Bst4CI	ACNGT	5 cut(s)	132, 146, 212, 281, 391
Bst6I	CTCTTC	2 cut(s)	411, 814
BstACI	GRCGYC	3 cut(s)	5, 61, 928
BstBI	TTCGAA	1 cut(s)	817
BstDEI	CTNAG	3 cut(s)	167, 224, 681
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	5 cut(s)	25, 319, 523, 585, 643
BstMAI	GTCTC	3 cut(s)	12, 397, 706
BstMBI	GATC	5 cut(s)	22, 316, 520, 582, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	505
BstNSI	RCATGY	2 cut(s)	737, 797
BstPAI	GACNNNNGTC	2 cut(s)	133, 718
BstSFI	CTRYAG	1 cut(s)	810
BstV1I	GCAGC	4 cut(s)	457, 479, 709, 922
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	2 cut(s)	316, 582
BstYI	RGATCY	2 cut(s)	316, 582
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	2 cut(s)	508, 761
BsuTUI	ATCGAT	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	646
CaiI	CAGNNNCTG	1 cut(s)	661
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	2 cut(s)	50, 859
Csp6I	GTAC	3 cut(s)	55, 107, 614
CviAII	CATG	3 cut(s)	547, 734, 794
CviQI	GTAC	3 cut(s)	55, 107, 614
DdeI	CTNAG	3 cut(s)	167, 224, 681
DpnI	GATC	5 cut(s)	24, 318, 522, 584, 642
DpnII	GATC	5 cut(s)	22, 316, 520, 582, 640
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	506, 759
Eam1104I	CTCTTC	2 cut(s)	411, 814
EarI	CTCTTC	2 cut(s)	411, 814
Eco130I	CCWWGG	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	397
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	615
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	550, 737, 797
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	546, 733, 793
FblI	GTMKAC	3 cut(s)	141, 730, 738
Fnu4HI	GCNGC	4 cut(s)	468, 471, 698, 911
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	4 cut(s)	468, 471, 698, 911
FspBI	CTAG	2 cut(s)	324, 402
GluI	GCNGC	4 cut(s)	468, 471, 698, 911
HaeIII	GGCC	2 cut(s)	508, 761
HgaI	GACGC	2 cut(s)	50, 859
Hin1I	GRCGYC	3 cut(s)	5, 61, 928
Hin1II	CATG	3 cut(s)	550, 737, 797
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	6 cut(s)	74, 269, 349, 714, 822, 889
HphI	GGTGA	5 cut(s)	200, 530, 562, 788, 800
Hpy166II	GTNNAC	6 cut(s)	142, 149, 179, 614, 731, 739
Hpy188I	TCNGA	7 cut(s)	27, 79, 348, 525, 634, 663, 901
Hpy188III	TCNNGA	1 cut(s)	840
Hpy8I	GTNNAC	6 cut(s)	142, 149, 179, 614, 731, 739
Hpy99I	CGWCG	2 cut(s)	930, 933
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	5 cut(s)	132, 146, 212, 281, 391
HpyCH4IV	ACGT	5 cut(s)	5, 157, 616, 746, 928
HpyCH4V	TGCA	7 cut(s)	311, 334, 494, 568, 605, 655, 697
HpyF10VI	GCNNNNNNNGC	1 cut(s)	505
HpyF3I	CTNAG	3 cut(s)	167, 224, 681
HpySE526I	ACGT	5 cut(s)	5, 157, 616, 746, 928
Hsp92I	GRCGYC	3 cut(s)	5, 61, 928
Hsp92II	CATG	3 cut(s)	550, 737, 797
Kzo9I	GATC	5 cut(s)	22, 316, 520, 582, 640
LmnI	GCTCC	1 cut(s)	772
LpnPI	CCDG	9 cut(s)	43, 111, 117, 133, 211, 341, 513, 641, 825
Lsp1109I	GCAGC	4 cut(s)	457, 479, 709, 922
MaeI	CTAG	2 cut(s)	324, 402
MaeII	ACGT	5 cut(s)	5, 157, 616, 746, 928
MaeIII	GTNAC	3 cut(s)	212, 252, 424
MalI	GATC	5 cut(s)	24, 318, 522, 584, 642
MboI	GATC	5 cut(s)	22, 316, 520, 582, 640
MboII	GAAGA	6 cut(s)	197, 428, 565, 698, 701, 831
MflI	RGATCY	2 cut(s)	316, 582
MhlI	GDGCHC	2 cut(s)	246, 290
MlsI	TGGCCA	1 cut(s)	761
MluCI	AATT	1 cut(s)	217
MluNI	TGGCCA	1 cut(s)	761
MlyI	GAGTC	3 cut(s)	278, 708, 831
MnlI	CCTC	2 cut(s)	107, 907
Mox20I	TGGCCA	1 cut(s)	761
MroXI	GAANNNNTTC	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	761
MseI	TTAA	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	761
MspA1I	CMGCKG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	505
NdeII	GATC	5 cut(s)	22, 316, 520, 582, 640
NlaIII	CATG	3 cut(s)	550, 737, 797
NlaIV	GGNNCC	3 cut(s)	118, 584, 768
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	2 cut(s)	737, 797
NspV	TTCGAA	1 cut(s)	817
PciI	ACATGT	1 cut(s)	733
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	74, 349, 889
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	4 cut(s)	469, 472, 699, 912
PleI	GAGTC	3 cut(s)	277, 708, 830
PpsI	GAGTC	3 cut(s)	277, 708, 830
PscI	ACATGT	1 cut(s)	733
PshAI	GACNNNNGTC	2 cut(s)	133, 718
Psp1406I	AACGTT	1 cut(s)	746
PspN4I	GGNNCC	3 cut(s)	118, 584, 768
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	2 cut(s)	316, 582
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	56, 108, 615
RsaNI	GTAC	3 cut(s)	55, 107, 614
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	4 cut(s)	468, 471, 698, 911
Sau3AI	GATC	5 cut(s)	22, 316, 520, 582, 640
ScaI	AGTACT	1 cut(s)	56
SchI	GAGTC	3 cut(s)	278, 708, 831
SduI	GDGCHC	2 cut(s)	246, 290
SfcI	CTRYAG	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	817
SmlI	CTYRAG	2 cut(s)	248, 716
SmoI	CTYRAG	2 cut(s)	248, 716
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	324, 402
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	5 cut(s)	132, 146, 212, 281, 391
TaiI	ACGT	5 cut(s)	8, 160, 619, 749, 931
TaqI	TCGA	6 cut(s)	87, 93, 141, 240, 352, 817
TasI	AATT	1 cut(s)	217
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	3 cut(s)	74, 349, 889
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	467, 470, 697, 910
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	6 cut(s)	65, 290, 375, 429, 433, 446
TspGWI	ACGGA	1 cut(s)	575
Van91I	CCANNNNNTGG	1 cut(s)	579
XceI	RCATGY	2 cut(s)	737, 797
XmiI	GTMKAC	3 cut(s)	141, 730, 738
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	324, 402
ZraI	GACGTC	2 cut(s)	6, 929
ZrmI	AGTACT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.