AT1G23960
WRKY Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001976
Physical Location & Seq
Reverse (-)
8478391 .. 8480356
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23960.1

Sequence Viewer

Length: 909 bp
ATGGCGACAGATGATTTTTTTAGCTTGCAGAGAGAATATTGGCGACAAGTGGCGGAATCCGATGGTTTCGATATTGAGAGTGTTCAAATACCACCATCTATGTATGGAAGGATCAATGGACTGATTCCCCACAACTGTGAAATCAATACGCCGCTTCCTTACCGTGTCTTGGGCAAGCACTATGCTAAGCTTGGGCTTCATCGTTACAATATGTTGAAGGGGACTAAATTCGAGTTCGGTCGCCTAATGAAATTCAACATGTTACAAAACTGTGTGGCCTCTTTCTACATAACTTTGGAAGCATACGATTACGGTGTTCCTGGCACATCACATCCTCAAACCTTTCAGGTTCGAATTGATGAAAAAATATTTGGCAGTTTGGATTTGACGGTCTCTATTGCTAGAAGAACTACAGATGAAGTGACCACCAAGAAGCCCTTCATACATCACTATCATGGTGGGGCAGTGGCGGATAATATCATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATGTTTTGAAAGACAGAGAACGTTTTTACGTGATTATGAATGAATCAGAGTGGCGAGCTACTGCTTGGATTTCTCTGTATTTGGAACTTGTACTTTGTGCACATGATAAGTTCATCACTAATACTGATCTGTCCCGGTTGAGTATTGAGAAAGTGGCGATAGAAACTAGTATTGGAGATGCGCTGTTGTATGAAAGACTCGAGGCCAAAAGTGCAAATGTCTACATATGGTTTAAACGCTTGGAAAAGCCTCGAGTCCCTCAACAGGTTTTTGTCACTGGTATGGATGTTGAACGCAAAGCGATAATTAGAAGAGTCATGGATAGTACAGGATACTTGACTCTCGTGGGTAAGCTTTGTGGTGGTGTCACAAAGGTCCGACAGTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

302

Amino Acids

34.82

Weight (kDa)

7.69

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 166 - 287 1.4e-33 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 738
AciI CCGC 3 cut(s) 53, 152, 470
AclI AACGTT 1 cut(s) 538
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 2 cut(s) 227, 251
AfaI GTAC 2 cut(s) 609, 844
AfiI CCNNNNNNNGG 2 cut(s) 169, 781
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 6 cut(s) 86, 217, 256, 487, 526, 809
AhlI ACTAGT 1 cut(s) 683
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 6 cut(s) 354, 386, 422, 454, 672, 704
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 4 cut(s) 24, 190, 575, 871
AluI AGCT 4 cut(s) 24, 190, 575, 871
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 1 cut(s) 397
Alw44I GTGCAC 1 cut(s) 615
AlwI GGATC 1 cut(s) 119
Ama87I CYCGRG 2 cut(s) 716, 768
AoxI GGCC 3 cut(s) 276, 506, 720
ApaLI GTGCAC 1 cut(s) 615
ApoI RAATTY 2 cut(s) 227, 251
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 2 cut(s) 507, 892
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 503
AsuII TTCGAA 1 cut(s) 352
AvaI CYCGRG 2 cut(s) 716, 768
AvaII GGWCC 1 cut(s) 892
BaeGI GKGCMC 1 cut(s) 619
BauI CACGAG 1 cut(s) 860
Bbv12I GWGCWC 1 cut(s) 619
BccI CCATC 2 cut(s) 56, 103
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 842
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 2 cut(s) 402, 684
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 842
BglI GCCNNNNNGGC 1 cut(s) 505
BisI GCNGC 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 153
Bme1390I CCNGG 2 cut(s) 321, 652
Bme18I GGWCC 1 cut(s) 892
BmeT110I CYCGRG 2 cut(s) 716, 768
BmgT120I GGNCC 2 cut(s) 507, 892
BmrFI CCNGG 2 cut(s) 321, 652
BmsI GCATC 1 cut(s) 685
Bpu1102I GCTNAGC 1 cut(s) 186
Bpu14I TTCGAA 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 652
BsaAI YACGTR 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 169, 781
Bse1I ACTGG 1 cut(s) 799
BseBI CCWGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 331, 808
BseLI CCNNNNNNNGG 2 cut(s) 169, 781
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 799
BseSI GKGCMC 1 cut(s) 619
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 3 cut(s) 278, 508, 722
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 619
BsiHKCI CYCGRG 2 cut(s) 716, 768
BsiSI CCGG 1 cut(s) 652
BslFI GGGAC 3 cut(s) 235, 634, 758
BslI CCNNNNNNNGG 2 cut(s) 169, 781
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 3 cut(s) 235, 634, 758
BsnI GGCC 3 cut(s) 278, 508, 722
Bso31I GGTCTC 1 cut(s) 397
BsoBI CYCGRG 2 cut(s) 716, 768
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 2 cut(s) 111, 643
Bsp1720I GCTNAGC 1 cut(s) 186
BspACI CCGC 3 cut(s) 53, 152, 470
BspANI GGCC 3 cut(s) 278, 508, 722
BspCNI CTCAG 1 cut(s) 524
BspPI GGATC 1 cut(s) 119
BspT104I TTCGAA 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 397
BsrI ACTGG 1 cut(s) 799
BssMI GATC 2 cut(s) 111, 643
BssSI CACGAG 1 cut(s) 860
Bst2BI CACGAG 1 cut(s) 860
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 6 cut(s) 137, 164, 272, 314, 391, 900
Bst6I CTCTTC 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 547
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 26, 176, 573
BstDEI CTNAG 2 cut(s) 186, 511
BstF5I GGATG 2 cut(s) 331, 808
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 2 cut(s) 114, 646
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 2 cut(s) 111, 643
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 505, 728
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 319, 650
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 619
BsuI GTATCC 1 cut(s) 842
BsuRI GGCC 3 cut(s) 278, 508, 722
BtsCI GGATG 2 cut(s) 331, 808
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 2 cut(s) 471, 792
Cac8I GCNNGC 3 cut(s) 26, 176, 573
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 2 cut(s) 507, 892
Csp6I GTAC 2 cut(s) 608, 843
CviAII CATG 4 cut(s) 259, 455, 620, 835
CviQI GTAC 2 cut(s) 608, 843
DdeI CTNAG 2 cut(s) 186, 511
DpnI GATC 2 cut(s) 113, 645
DpnII GATC 2 cut(s) 111, 643
DraI TTTAAA 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 823
EarI CTCTTC 1 cut(s) 823
EciI GGCGGA 2 cut(s) 68, 485
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 892
Eco88I CYCGRG 2 cut(s) 716, 768
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 262, 458, 623, 838
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 3 cut(s) 235, 634, 758
FatI CATG 4 cut(s) 258, 454, 619, 834
FauNDI CATATG 1 cut(s) 743
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 2 cut(s) 318, 815
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 2 cut(s) 402, 684
GlaI GCGC 1 cut(s) 699
GluI GCNGC 1 cut(s) 152
HaeIII GGCC 3 cut(s) 278, 508, 722
HapII CCGG 1 cut(s) 652
HhaI GCGC 1 cut(s) 700
Hin1II CATG 4 cut(s) 262, 458, 623, 838
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HindIII AAGCTT 2 cut(s) 188, 869
HinfI GANTC 7 cut(s) 56, 124, 560, 714, 771, 831, 856
HpaII CCGG 1 cut(s) 652
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 2 cut(s) 617, 739
Hpy188I TCNGA 4 cut(s) 61, 514, 565, 896
Hpy8I GTNNAC 2 cut(s) 617, 739
HpyAV CCTTC 3 cut(s) 102, 211, 448
HpyCH4III ACNGT 6 cut(s) 137, 164, 272, 314, 391, 900
HpyCH4IV ACGT 2 cut(s) 538, 546
HpyCH4V TGCA 3 cut(s) 28, 617, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 505, 728
HpyF3I CTNAG 2 cut(s) 186, 511
HpySE526I ACGT 2 cut(s) 538, 546
Hsp92II CATG 4 cut(s) 262, 458, 623, 838
HspAI GCGC 1 cut(s) 698
Kzo9I GATC 2 cut(s) 111, 643
LpnPI CCDG 8 cut(s) 306, 332, 333, 513, 665, 767, 780, 831
LweI GCATC 1 cut(s) 685
MaeI CTAG 2 cut(s) 402, 684
MaeII ACGT 2 cut(s) 538, 546
MaeIII GTNAC 5 cut(s) 203, 261, 421, 790, 883
MalI GATC 2 cut(s) 113, 645
MboI GATC 2 cut(s) 111, 643
MboII GAAGA 3 cut(s) 417, 475, 840
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 6 cut(s) 227, 251, 354, 494, 822, 904
MlyI GAGTC 4 cut(s) 708, 780, 840, 850
MnlI CCTC 6 cut(s) 289, 345, 520, 712, 777, 786
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 2 cut(s) 750, 903
MslI CAYNNNNRTG 3 cut(s) 135, 453, 797
MspI CCGG 1 cut(s) 652
MspR9I CCNGG 2 cut(s) 321, 652
MssI GTTTAAAC 1 cut(s) 751
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 505, 728
NciI CCSGG 1 cut(s) 652
NdeI CATATG 1 cut(s) 743
NdeII GATC 2 cut(s) 111, 643
NlaIII CATG 4 cut(s) 262, 458, 623, 838
NmuCI GTSAC 3 cut(s) 421, 790, 883
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 135
PaeR7I CTCGAG 2 cut(s) 716, 768
PciI ACATGT 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 56, 124, 560
PkrI GCNGC 1 cut(s) 153
PleI GAGTC 4 cut(s) 708, 779, 839, 850
PmeI GTTTAAAC 1 cut(s) 751
PpsI GAGTC 4 cut(s) 708, 779, 839, 850
Ppu21I YACGTR 1 cut(s) 547
PscI ACATGT 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 538
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspPI GGNCC 2 cut(s) 507, 892
PspXI VCTCGAGB 2 cut(s) 716, 768
RsaI GTAC 2 cut(s) 609, 844
RsaNI GTAC 2 cut(s) 608, 843
RseI CAYNNNNRTG 3 cut(s) 135, 453, 797
SaqAI TTAA 2 cut(s) 750, 903
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 111, 643
Sau96I GGNCC 2 cut(s) 507, 892
SchI GAGTC 4 cut(s) 708, 780, 840, 850
ScrFI CCNGG 2 cut(s) 321, 652
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 411
Sfr274I CTCGAG 2 cut(s) 716, 768
SfuI TTCGAA 1 cut(s) 352
SinI GGWCC 1 cut(s) 892
SlaI CTCGAG 2 cut(s) 716, 768
SmiMI CAYNNNNRTG 3 cut(s) 135, 453, 797
SmlI CTYRAG 2 cut(s) 716, 768
SmoI CTYRAG 2 cut(s) 716, 768
SpeI ACTAGT 1 cut(s) 683
Sse9I AATT 6 cut(s) 227, 251, 354, 494, 822, 904
SsiI CCGC 3 cut(s) 53, 152, 470
SspI AATATT 2 cut(s) 38, 369
SspMI CTAG 2 cut(s) 402, 684
StyD4I CCNGG 2 cut(s) 319, 650
TaaI ACNGT 6 cut(s) 137, 164, 272, 314, 391, 900
TaiI ACGT 2 cut(s) 541, 549
TaqI TCGA 5 cut(s) 69, 231, 352, 717, 769
TaqII GACCGA 1 cut(s) 227
TasI AATT 6 cut(s) 227, 251, 354, 494, 822, 904
TatI WGTACW 2 cut(s) 607, 842
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 3 cut(s) 56, 124, 560
Tru1I TTAA 2 cut(s) 750, 903
Tru9I TTAA 2 cut(s) 750, 903
TscAI CASTG 2 cut(s) 471, 799
TseFI GTSAC 3 cut(s) 421, 790, 883
Tsp45I GTSAC 3 cut(s) 421, 790, 883
TspDTI ATGAA 9 cut(s) 188, 263, 375, 430, 432, 569, 573, 619, 723
TspRI CASTG 2 cut(s) 471, 799
VneI GTGCAC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 2 cut(s) 227, 251
XceI RCATGY 1 cut(s) 262
XhoI CTCGAG 2 cut(s) 716, 768
XmiI GTMKAC 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 2 cut(s) 402, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.