Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

8891920 .. 8893244

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGTGCTCGAAACTCCGGTCTGTTCTCCCATAGACAAAGAATCCTCCTCCGACGATGTGCAGCTCAACAAACCGCCGAAGAAAAAGCGGAAGCTTGACGTCGTCTATCCACCCAGAGACAATACATCCTCCTCCTCCGATGTGAAACCCAAAGTCCCCGGATATTGTGGGGTAAAAGCCATTGGATGTAATCGCTCTGACGAACTCCTTGCAGAGGTGGCACTCCATTCCTACAATTCTCAAACGGGGACAAATTTAGAGTTGATGACTGTAACCCAAGTCATGCTGCAATCGGTTGCACATATCAATTATCATATGATATTGGATGCCTTTGATCCAGCCAACAATTCCCTTTCCAGTATTGAAATATGCCTTTGGGATGCTGCCGTAAAGAATAATGAGAAATTGAGATTAGTCACCACTTTTTGCAGCCTTGAAGGGTCTGGAGATAAAGGTTCCCAATGGGATCCTAATGGTGTAGACGTGCTCTATACTGGTGTGATGCCTAAGTGGCTAGATGATGGTGCCCTTTCAGGAAGCGAGAAGCTACACTACTATGAGGTTAATGATTCCGATTTGCAAGAGAATAAATGGCTTCATCTATATGCTCAAGTTGGAGCATACTCTAAGTGGGATCTTGGCATGGTTAAACATTTCCCATTGGAGATAAAGAAAGTAGTGGTACAAACAATGGAAGACGACATAGAGTCAAATTTGAAGTTGAAGTCGAGCAATGCTATCTTCTATATAACCTTCACGACTAGTGGAGGTGTCGAGTGCGCATGCATAATAAGGCAAACGAGGAATGGAAGACCACAACACATGTGCCTTGAAATTAATAATGTTGAGATGGACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0004832 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

286

Amino Acids

31.93

Weight (kDa)

5.3

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	168 - 277	5.3e-32	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc16I	TGCGCA	1 cut(s)	781
AccB1I	GGYRCC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	74, 88
AclWI	GGATC	4 cut(s)	329, 461, 474, 642
AcsI	RAATTY	2 cut(s)	253, 712
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	1 cut(s)	214
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	5 cut(s)	365, 437, 718, 724, 833
AhdI	GACNNNNNGTC	1 cut(s)	706
AhlI	ACTAGT	1 cut(s)	761
AjiI	CACGTC	1 cut(s)	484
AluBI	AGCT	3 cut(s)	64, 94, 547
AluI	AGCT	3 cut(s)	64, 94, 547
Alw21I	GWGCWC	2 cut(s)	9, 489
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	4 cut(s)	329, 461, 474, 642
ApeKI	GCWGC	4 cut(s)	61, 286, 383, 429
ApoI	RAATTY	2 cut(s)	253, 712
ArsI	GACNNNNNNTTYG	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	782
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbsI	GAAGAC	2 cut(s)	702, 817
Bbv12I	GWGCWC	2 cut(s)	9, 489
BbvI	GCAGC	4 cut(s)	73, 273, 370, 441
BccI	CCATC	2 cut(s)	515, 844
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	111
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	2 cut(s)	515, 762
BglI	GCCNNNNNGGC	1 cut(s)	511
BisI	GCNGC	4 cut(s)	62, 287, 384, 430
BlsI	GCNGC	4 cut(s)	63, 288, 385, 431
Bme1390I	CCNGG	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmgBI	CACGTC	1 cut(s)	484
BmiI	GGNNCC	3 cut(s)	457, 468, 526
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	316, 370, 492
BpiI	GAAGAC	2 cut(s)	702, 817
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	157
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	357, 499
Bse3DI	GCAATG	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	4 cut(s)	125, 191, 331, 385
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	739
BseNI	ACTGG	2 cut(s)	357, 499
BseRI	GAGGAG	3 cut(s)	37, 121, 124
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	4 cut(s)	73, 273, 370, 441
BsgI	GTGCAG	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	2 cut(s)	9, 489
BsiSI	CCGG	2 cut(s)	17, 159
BslFI	GGGAC	2 cut(s)	140, 262
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	140, 262
Bsp1286I	GDGCHC	3 cut(s)	9, 489, 529
Bsp143I	GATC	3 cut(s)	334, 466, 634
BspACI	CCGC	2 cut(s)	74, 88
BspLI	GGNNCC	3 cut(s)	457, 468, 526
BspPI	GGATC	4 cut(s)	329, 461, 474, 642
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	739
BsrI	ACTGG	2 cut(s)	357, 499
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	334, 466, 634
BssNI	GRCGYC	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	2 cut(s)	507, 627
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	4 cut(s)	125, 191, 331, 385
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	3 cut(s)	337, 469, 637
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	334, 466, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 511
BstNSI	RCATGY	2 cut(s)	786, 826
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	4 cut(s)	73, 273, 370, 441
BstV2I	GAAGAC	2 cut(s)	702, 817
BstX2I	RGATCY	2 cut(s)	466, 634
BstYI	RGATCY	2 cut(s)	466, 634
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	4 cut(s)	125, 191, 331, 385
Cac8I	GCNNGC	1 cut(s)	784
CfoI	GCGC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	4 cut(s)	283, 643, 783, 823
CviJI	RGCY	8 cut(s)	64, 94, 179, 341, 432, 514, 547, 595
CviKI_1	RGCY	8 cut(s)	64, 94, 179, 341, 432, 514, 547, 595
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	2 cut(s)	507, 627
DpnI	GATC	3 cut(s)	336, 468, 636
DpnII	GATC	3 cut(s)	334, 466, 634
DriI	GACNNNNNGTC	1 cut(s)	706
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	788
FaeI	CATG	4 cut(s)	286, 646, 786, 826
FaqI	GGGAC	2 cut(s)	140, 262
FatI	CATG	4 cut(s)	282, 642, 782, 822
FauNDI	CATATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	62, 287, 384, 430
FokI	GGATG	4 cut(s)	112, 198, 338, 392
Fsp4HI	GCNGC	4 cut(s)	62, 287, 384, 430
FspAI	RTGCGCAY	1 cut(s)	781
FspBI	CTAG	2 cut(s)	515, 762
FspI	TGCGCA	1 cut(s)	781
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	4 cut(s)	62, 287, 384, 430
GsuI	CTGGAG	1 cut(s)	465
HapII	CCGG	2 cut(s)	17, 159
HhaI	GCGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	286, 646, 786, 826
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	3 cut(s)	41, 569, 707
HpaII	CCGG	2 cut(s)	17, 159
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	4 cut(s)	52, 139, 199, 574
Hpy188III	TCNNGA	3 cut(s)	444, 534, 757
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	2 cut(s)	56, 104
HpyAV	CCTTC	2 cut(s)	431, 763
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	2 cut(s)	99, 483
HpyCH4V	TGCA	7 cut(s)	61, 212, 289, 299, 429, 580, 786
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 511
HpyF3I	CTNAG	2 cut(s)	507, 627
HpySE526I	ACGT	2 cut(s)	99, 483
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	286, 646, 786, 826
HspAI	GCGC	1 cut(s)	780
Kzo9I	GATC	3 cut(s)	334, 466, 634
LmnI	GCTCC	1 cut(s)	617
LpnPI	CCDG	8 cut(s)	30, 127, 172, 351, 370, 429, 480, 519
Lsp1109I	GCAGC	4 cut(s)	73, 273, 370, 441
LweI	GCATC	3 cut(s)	316, 370, 492
MaeI	CTAG	2 cut(s)	515, 762
MaeII	ACGT	2 cut(s)	99, 483
MaeIII	GTNAC	2 cut(s)	271, 415
MalI	GATC	3 cut(s)	336, 468, 636
MboI	GATC	3 cut(s)	334, 466, 634
MboII	GAAGA	4 cut(s)	91, 707, 733, 822
MflI	RGATCY	2 cut(s)	466, 634
MhlI	GDGCHC	3 cut(s)	9, 489, 529
MluCI	AATT	7 cut(s)	235, 253, 307, 346, 404, 712, 834
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	75, 595
MnlI	CCTC	9 cut(s)	55, 58, 139, 142, 145, 208, 553, 761, 795
Mph1103I	ATGCAT	1 cut(s)	788
MseI	TTAA	3 cut(s)	564, 648, 837
MslI	CAYNNNNRTG	2 cut(s)	555, 603
MspI	CCGG	2 cut(s)	17, 159
MspR9I	CCNGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	218, 511
NciI	CCSGG	1 cut(s)	159
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	3 cut(s)	334, 466, 634
NlaIII	CATG	4 cut(s)	286, 646, 786, 826
NlaIV	GGNNCC	3 cut(s)	457, 468, 526
NmuCI	GTSAC	1 cut(s)	415
NsbI	TGCGCA	1 cut(s)	781
NsiI	ATGCAT	1 cut(s)	788
NspI	RCATGY	2 cut(s)	786, 826
PaeI	GCATGC	1 cut(s)	786
PciI	ACATGT	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	41, 569
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	63, 288, 385, 431
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PscI	ACATGT	1 cut(s)	822
PshBI	ATTAAT	1 cut(s)	837
PspN4I	GGNNCC	3 cut(s)	457, 468, 526
PsuI	RGATCY	2 cut(s)	466, 634
PsyI	GACNNNGTC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	2 cut(s)	555, 603
SaqAI	TTAA	3 cut(s)	564, 648, 837
SatI	GCNGC	4 cut(s)	62, 287, 384, 430
Sau3AI	GATC	3 cut(s)	334, 466, 634
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	3 cut(s)	9, 489, 529
SfaNI	GCATC	3 cut(s)	316, 370, 492
SmiMI	CAYNNNNRTG	2 cut(s)	555, 603
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
SpeI	ACTAGT	1 cut(s)	761
SphI	GCATGC	1 cut(s)	786
Sse9I	AATT	7 cut(s)	235, 253, 307, 346, 404, 712, 834
SsiI	CCGC	2 cut(s)	74, 88
SspMI	CTAG	2 cut(s)	515, 762
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	2 cut(s)	102, 486
TaqI	TCGA	3 cut(s)	9, 728, 774
TasI	AATT	7 cut(s)	235, 253, 307, 346, 404, 712, 834
TfiI	GAWTC	2 cut(s)	41, 569
Tru1I	TTAA	3 cut(s)	564, 648, 837
Tru9I	TTAA	3 cut(s)	564, 648, 837
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	4 cut(s)	61, 286, 383, 429
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	587
Tth111I	GACNNNGTC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	837
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	253, 712
XceI	RCATGY	2 cut(s)	786, 826
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	2 cut(s)	515, 762
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.