AT1G19565

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001976
Physical Location & Seq
Reverse (-)
6772084 .. 6773131
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G19565.1

Sequence Viewer

Length: 645 bp
ATGGATCAAACCCACAAAAAAATCCATTGGAGGCTGGGTCTCTGCAAATGCAAAAACATAAGTCTTGTCGAGACTCGAGAGTCTTACCGATCTTTACATCCCACAAATCAACCATATCGTTCTGCGATACAATGTTCTTGGGCGGATGACAACTTTGTTACACCGGAGGAGGAATATGAACCATCCTTGCCCTCTTCAGAATCACCAACTGACAGCTGTCATGCTGACCATGAATCACCCGATTCACCAAAATATCAACAACCGGCTCCGGGAGAAAGGCCGGAATGTGAAATCTACAAAGATTTATGTTCTGATCCCCAGACGGTAGACTGGGCGGCTCCACCTTTGAAAATCAGAGATGGAAGACACCAGGAATTGTTTCTTCTGTACGCGGAAATCACATTGTTCTCCCACTGGGCATCTATTAAGCTAGTGGAGTGGGCAAAGCCATTGGAGCTAATATATGTAATTGTGCAAACCTGGGAGCCGAAGCTGACGATGAAGGCCAAGGCAGCGAATGCAAACTTCTACGTTACCTTTTCAAACCGTCACGGTTTTCCCTACCATGCTGTCATAAGGAGAACAACGACTAGAATACCAAACCAGATGTCGCTTGAATTCAAGATGTTGATGCGTTCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.92

Weight (kDa)

6.75

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 121 - 205 8.5e-14 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 392
AciI CCGC 3 cut(s) 143, 335, 392
AclWI GGATC 2 cut(s) 12, 308
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 4 cut(s) 349, 543, 617, 622
AjnI CCWGG 2 cut(s) 369, 479
AluBI AGCT 4 cut(s) 216, 430, 457, 493
AluI AGCT 4 cut(s) 216, 430, 457, 493
Alw26I GTCTC 2 cut(s) 44, 65
AlwI GGATC 2 cut(s) 12, 308
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 2 cut(s) 278, 504
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 617
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp700I GAANNNNTTC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 195, 228, 237
AvaI CYCGRG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 524
BccI CCATC 2 cut(s) 190, 353
BciT130I CCWGG 2 cut(s) 371, 481
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 44, 65
BfaI CTAG 2 cut(s) 431, 591
BisI GCNGC 2 cut(s) 336, 513
BlsI GCNGC 2 cut(s) 337, 514
Bme1390I CCNGG 3 cut(s) 270, 371, 481
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 3 cut(s) 267, 339, 486
BmrFI CCNGG 3 cut(s) 270, 371, 481
BmrI ACTGGG 2 cut(s) 340, 424
BmsI GCATC 2 cut(s) 428, 621
BmuI ACTGGG 2 cut(s) 340, 424
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 370
BpuMI CCSGG 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 480, 507
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 2 cut(s) 335, 419
BseBI CCWGG 2 cut(s) 371, 481
BseDI CCNNGG 2 cut(s) 480, 507
BseGI GGATG 3 cut(s) 97, 151, 182
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 335, 419
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 524
BseYI CCCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 392
BshFI GGCC 2 cut(s) 280, 506
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 4 cut(s) 164, 263, 269, 281
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 44, 65
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 2 cut(s) 280, 506
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 1 cut(s) 75
Bsp143I GATC 3 cut(s) 4, 89, 313
BspACI CCGC 3 cut(s) 143, 335, 392
BspANI GGCC 2 cut(s) 280, 506
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 3 cut(s) 267, 339, 486
BspPI GGATC 2 cut(s) 12, 308
BspTNI GGTCTC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 2 cut(s) 335, 419
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 480, 507
BssMI GATC 3 cut(s) 4, 89, 313
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 371, 481
Bst4CI ACNGT 3 cut(s) 325, 548, 554
Bst6I CTCTTC 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 518
BstF5I GGATG 3 cut(s) 97, 151, 182
BstFNI CGCG 1 cut(s) 392
BstKTI GATC 3 cut(s) 7, 92, 316
BstMAI GTCTC 2 cut(s) 44, 65
BstMBI GATC 3 cut(s) 4, 89, 313
BstMWI GCNNNNNNNGC 3 cut(s) 454, 512, 518
BstNI CCWGG 2 cut(s) 371, 481
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 3 cut(s) 268, 369, 479
BstUI CGCG 1 cut(s) 392
BstV1I GCAGC 1 cut(s) 524
BstV2I GAAGAC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 280, 506
BtsCI GGATG 3 cut(s) 97, 151, 182
BtsIMutI CAGTG 1 cut(s) 412
Cfr10I RCCGGY 1 cut(s) 262
Csp6I GTAC 1 cut(s) 388
CviAII CATG 3 cut(s) 221, 230, 566
CviQI GTAC 1 cut(s) 388
DpnI GATC 3 cut(s) 6, 91, 315
DpnII GATC 3 cut(s) 4, 89, 313
DrdI GACNNNNNNGTC 1 cut(s) 79
DseDI GACNNNNNNGTC 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 617
EcoRII CCWGG 2 cut(s) 369, 479
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 3 cut(s) 224, 233, 569
FatI CATG 3 cut(s) 220, 229, 565
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 336, 513
FokI GGATG 3 cut(s) 84, 158, 169
Fsp4HI GCNGC 2 cut(s) 336, 513
FspBI CTAG 2 cut(s) 431, 591
GluI GCNGC 2 cut(s) 336, 513
GsaI CCCAGC 1 cut(s) 38
HaeIII GGCC 2 cut(s) 280, 506
HapII CCGG 4 cut(s) 164, 263, 269, 281
Hin1II CATG 3 cut(s) 224, 233, 569
HinfI GANTC 5 cut(s) 73, 80, 200, 233, 242
HpaII CCGG 4 cut(s) 164, 263, 269, 281
HphI GGTGA 3 cut(s) 195, 228, 237
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 199, 313, 356
Hpy188III TCNNGA 3 cut(s) 70, 77, 622
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 496
HpyCH4III ACNGT 3 cut(s) 325, 548, 554
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 4 cut(s) 45, 51, 475, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 454, 512, 518
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 3 cut(s) 224, 233, 569
Kzo9I GATC 3 cut(s) 4, 89, 313
LmnI GCTCC 4 cut(s) 271, 343, 454, 484
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 2 cut(s) 428, 621
MaeI CTAG 2 cut(s) 431, 591
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 157, 532, 548
MalI GATC 3 cut(s) 6, 91, 315
MboI GATC 3 cut(s) 4, 89, 313
MboII GAAGA 3 cut(s) 186, 374, 375
MluCI AATT 3 cut(s) 374, 468, 617
MlyI GAGTC 2 cut(s) 67, 89
MnlI CCTC 4 cut(s) 24, 160, 163, 202
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 4 cut(s) 164, 263, 269, 281
MspR9I CCNGG 3 cut(s) 270, 371, 481
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 371, 481
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 3 cut(s) 454, 512, 518
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 4, 89, 313
NlaIII CATG 3 cut(s) 224, 233, 569
NlaIV GGNNCC 3 cut(s) 267, 339, 486
NmuCI GTSAC 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 75
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 200, 233, 242
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 2 cut(s) 337, 514
PleI GAGTC 2 cut(s) 67, 88
PpsI GAGTC 2 cut(s) 67, 88
PshAI GACNNNNGTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 369, 479
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 369, 479
PspN4I GGNNCC 3 cut(s) 267, 339, 486
PvuII CAGCTG 1 cut(s) 216
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 336, 513
Sau3AI GATC 3 cut(s) 4, 89, 313
SchI GAGTC 2 cut(s) 67, 89
ScrFI CCNGG 3 cut(s) 270, 371, 481
SetI ASST 8 cut(s) 218, 346, 432, 459, 482, 495, 534, 539
SfaNI GCATC 2 cut(s) 428, 621
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 3 cut(s) 374, 468, 617
SsiI CCGC 3 cut(s) 143, 335, 392
SspMI CTAG 2 cut(s) 431, 591
StyD4I CCNGG 3 cut(s) 268, 369, 479
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 3 cut(s) 325, 548, 554
TaiI ACGT 1 cut(s) 534
TaqI TCGA 2 cut(s) 69, 76
TasI AATT 3 cut(s) 374, 468, 617
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 3 cut(s) 200, 233, 242
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 512
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 192, 246, 515
TspRI CASTG 1 cut(s) 419
XapI RAATTY 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 2 cut(s) 431, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.