Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Forward (+)

30307505 .. 30308844

Gene Structure 1340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80625.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCGTTTCATCTACTCAGACCAAAACAAAGGTTCGACTTGAACCCATTTCTGATCCGTATTTTCTCAACATCCTCATCAAGCCTACCCTCTCAATTACCGTCGAACTTCTTTACTAAGAAACCTCTCGTCGACCGGGCGAGGGATTCAGGCAATGTTTTTGACCGGTTTGCTATTAATCGATATCGGAGAGAGAAACCTGATGAAATACAAAGCGAGGTTTTAATAACAGAGCAGCCAAAGGAAGAAAAAAGGAGGAGACCTGGAAGACCCAAGAAGAAACAACTAGTAGAGAAGAAACCACCATTGGACGAAAAGAAAAGCAGAGCTGCAAGTATAGCAAGGAAAACTTTTACTGCTTTTGGTAGCTCTCTACAAAATGCACTAAAGAATCATCCTGATTACATATGCAGTGTGACGCATGCAATGGATGTTTTAAATGGTCTACCTAGAGTGAAGAAGTGGTTGCCTTTATACCGTGCTTCCATGGACCATCTGATGGCTGATGTAGCTCACCGCCAAGCCTTTTTAACAGTCTCTGATCCTGAGGATATGATTCGCTACTTGAGGTATAAGACCCAAAAAATGAAGAGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

199

Amino Acids

23.31

Weight (kDa)

10.3

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccI	GTMKAC	2 cut(s)	132, 445
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	2 cut(s)	49, 536
AfiI	CCNNNNNNNGG	2 cut(s)	142, 499
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	43
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AluBI	AGCT	3 cut(s)	329, 369, 512
AluI	AGCT	3 cut(s)	329, 369, 512
Alw26I	GTCTC	2 cut(s)	253, 541
AlwI	GGATC	2 cut(s)	49, 536
AlwNI	CAGNNNCTG	1 cut(s)	539
ApeKI	GCWGC	2 cut(s)	235, 329
AseI	ATTAAT	1 cut(s)	177
AsiGI	ACCGGT	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	490
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	247, 316
BccI	CCATC	2 cut(s)	493, 501
BciT130I	CCWGG	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	253, 541
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	2 cut(s)	287, 450
BisI	GCNGC	2 cut(s)	236, 330
BlsI	GCNGC	2 cut(s)	237, 331
Bme1390I	CCNGG	2 cut(s)	137, 264
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	490
BmrFI	CCNGG	2 cut(s)	137, 264
BpiI	GAAGAC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 499
Bse118I	RCCGGY	1 cut(s)	165
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	2 cut(s)	160, 432
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	3 cut(s)	71, 394, 436
BseLI	CCNNNNNNNGG	2 cut(s)	142, 499
BseMI	GCAATG	2 cut(s)	160, 432
BseMII	CTCAG	2 cut(s)	31, 537
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	247, 316
Bsh1285I	CGRYCG	1 cut(s)	136
BshTI	ACCGGT	1 cut(s)	165
BshVI	ATCGAT	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	136, 166
BslI	CCNNNNNNNGG	2 cut(s)	142, 499
BsmAI	GTCTC	2 cut(s)	253, 541
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	54, 541
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	1 cut(s)	517
BspCNI	CTCAG	2 cut(s)	30, 538
BspDI	ATCGAT	1 cut(s)	181
BspPI	GGATC	2 cut(s)	49, 536
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	2 cut(s)	160, 432
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	54, 541
BssT1I	CCWWGG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	3 cut(s)	102, 479, 535
Bst6I	CTCTTC	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	17, 117, 546
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	71, 394, 436
BstKTI	GATC	2 cut(s)	57, 544
BstMAI	GTCTC	2 cut(s)	253, 541
BstMBI	GATC	2 cut(s)	54, 541
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 509
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	135, 262
BstV1I	GCAGC	2 cut(s)	247, 316
BstV2I	GAAGAC	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	71, 394, 436
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	539
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	490
ClaI	ATCGAT	1 cut(s)	181
CseI	GACGC	1 cut(s)	427
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	2 cut(s)	422, 487
CviJI	RGCY	7 cut(s)	84, 238, 329, 369, 503, 512, 524
CviKI_1	RGCY	7 cut(s)	84, 238, 329, 369, 503, 512, 524
DdeI	CTNAG	3 cut(s)	17, 117, 546
DpnI	GATC	2 cut(s)	56, 543
DpnII	GATC	2 cut(s)	54, 541
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
Eco130I	CCWWGG	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	425, 490
FaiI	YATR	8 cut(s)	338, 407, 409, 423, 475, 488, 554, 573
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FatI	CATG	2 cut(s)	421, 486
FauNDI	CATATG	1 cut(s)	407
FblI	GTMKAC	2 cut(s)	132, 445
Fnu4HI	GCNGC	2 cut(s)	236, 330
FokI	GGATG	3 cut(s)	58, 381, 443
Fsp4HI	GCNGC	2 cut(s)	236, 330
FspBI	CTAG	2 cut(s)	287, 450
GluI	GCNGC	2 cut(s)	236, 330
HapII	CCGG	2 cut(s)	136, 166
HgaI	GACGC	1 cut(s)	427
Hin1II	CATG	2 cut(s)	425, 490
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	146, 391, 556
HpaII	CCGG	2 cut(s)	136, 166
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	2 cut(s)	133, 446
Hpy188I	TCNGA	5 cut(s)	20, 54, 189, 498, 541
Hpy188III	TCNNGA	2 cut(s)	398, 545
Hpy8I	GTNNAC	2 cut(s)	133, 446
Hpy99I	CGWCG	2 cut(s)	106, 134
HpyCH4III	ACNGT	3 cut(s)	102, 479, 535
HpyCH4V	TGCA	4 cut(s)	332, 383, 411, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 509
HpyF3I	CTNAG	3 cut(s)	17, 117, 546
Hsp92II	CATG	2 cut(s)	425, 490
Kzo9I	GATC	2 cut(s)	54, 541
LpnPI	CCDG	8 cut(s)	135, 149, 179, 213, 249, 276, 411, 558
Lsp1109I	GCAGC	2 cut(s)	247, 316
MaeI	CTAG	2 cut(s)	287, 450
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	2 cut(s)	56, 543
MboI	GATC	2 cut(s)	54, 541
MboII	GAAGA	5 cut(s)	257, 279, 289, 307, 469
MluCI	AATT	1 cut(s)	95
MnlI	CCTC	9 cut(s)	85, 100, 135, 135, 211, 249, 541, 561, 585
MseI	TTAA	4 cut(s)	177, 224, 437, 530
MspI	CCGG	2 cut(s)	136, 166
MspR9I	CCNGG	2 cut(s)	137, 264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	338, 509
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	2 cut(s)	54, 541
NlaIII	CATG	2 cut(s)	425, 490
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	425
PfeI	GAWTC	3 cut(s)	146, 391, 556
PflMI	CCANNNNNTGG	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	237, 331
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	490
PstNI	CAGNNNCTG	1 cut(s)	539
SalI	GTCGAC	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	177, 224, 437, 530
SatI	GCNGC	2 cut(s)	236, 330
Sau3AI	GATC	2 cut(s)	54, 541
Sau96I	GGNCC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	137, 264
SinI	GGWCC	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
SpeI	ACTAGT	1 cut(s)	286
SphI	GCATGC	1 cut(s)	425
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	517
SspMI	CTAG	2 cut(s)	287, 450
StyD4I	CCNGG	2 cut(s)	135, 262
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	102, 479, 535
TaqI	TCGA	4 cut(s)	36, 104, 132, 181
TasI	AATT	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	146, 391, 556
Tru1I	TTAA	4 cut(s)	177, 224, 437, 530
Tru9I	TTAA	4 cut(s)	177, 224, 437, 530
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	235, 329
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	418
Van91I	CCANNNNNTGG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	490
VspI	ATTAAT	1 cut(s)	177
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	2 cut(s)	132, 445
XspI	CTAG	2 cut(s)	287, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.