Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

21172827 .. 21174172

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCAGCCATCTAGTGGAAGGCGTTTTACTTTTCAGACTTCCGTTTATGAAGAAGCTTGTGGCCGGCTTGTTTTGACCTCCTTTATTGCTGAAAGACGTCGTCCAGGGACAATCATTAAAACGTCGTTGGAAAGAGAATTCTACCGCATGGGTAGCTTGCCTGAGTTCCCGCTGGAGAACCCTTTCGAAAACAGAAACCGATTTTACGTGGTGGATGATGAATCAGAGCTGCGAGCCAATGACTGGATTCGTCTGTATCTGGAACTTTCTGTTGCCATATCTGATAGGACCACCACGGATCATGATCTTTCCGGCTTGAGGATTGTGTCAGTAGCCATTCAAACTATGGAGCCACCCAGTGAGTCCTCTCTCACTGCTAAGAATGCAACTGTCTACATAAGGTACATTGACTTTTGTAAGGCTCGCTGTGGTCAGAACCTTGATCGCATAGCTGTAGTTAGAAGAAACCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

158

Amino Acids

18.29

Weight (kDa)

7.71

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	53 - 157	7.4e-31	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	100
AccB7I	CCANNNNNTGG	2 cut(s)	14, 243
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	2 cut(s)	145, 170
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	97
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	3 cut(s)	14, 243, 318
AgsI	TTSAA	2 cut(s)	341, 473
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	4 cut(s)	56, 156, 229, 452
AluI	AGCT	4 cut(s)	56, 156, 229, 452
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	4, 229
ApoI	RAATTY	1 cut(s)	137
Asp700I	GAANNNNTTC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	288
AsuII	TTCGAA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	288
BarI	GAAGNNNNNNTAC	2 cut(s)	10, 42
BbvI	GCAGC	2 cut(s)	16, 216
BccI	CCATC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	2 cut(s)	5, 230
BlsI	GCNGC	2 cut(s)	6, 231
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	2 cut(s)	104, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 243, 318
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	248, 357
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	104, 294
BseGI	GGATG	1 cut(s)	220
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	14, 243, 318
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	248, 357
BseXI	GCAGC	2 cut(s)	16, 216
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	64, 312
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	14, 243, 318
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	298, 304, 442
BspACI	CCGC	2 cut(s)	145, 170
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	306
BspT104I	TTCGAA	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	248, 357
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	2 cut(s)	104, 294
BssMI	GATC	3 cut(s)	298, 304, 442
BssNI	GRCGYC	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	4 cut(s)	65, 158, 234, 424
BstDEI	CTNAG	2 cut(s)	162, 378
BstDSI	CCRYGG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	3 cut(s)	301, 307, 445
BstMBI	GATC	3 cut(s)	298, 304, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 383
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	16, 216
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	364, 372
Cac8I	GCNNGC	4 cut(s)	65, 158, 234, 424
CciI	TCATGA	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	2 cut(s)	148, 302
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	162, 378
DpnI	GATC	3 cut(s)	300, 306, 444
DpnII	GATC	3 cut(s)	298, 304, 442
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	151, 305
FaiI	YATR	7 cut(s)	48, 149, 278, 303, 347, 398, 449
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	147, 301
FauI	CCCGC	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	5, 230
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	5, 230
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	2 cut(s)	5, 230
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	64, 312
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	151, 305
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	221, 247, 362
HpaII	CCGG	2 cut(s)	64, 312
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	4 cut(s)	36, 226, 283, 435
Hpy188III	TCNNGA	2 cut(s)	260, 302
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	102, 127
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	3 cut(s)	97, 122, 207
HpyCH4V	TGCA	2 cut(s)	4, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 383
HpyF3I	CTNAG	2 cut(s)	162, 378
HpySE526I	ACGT	3 cut(s)	97, 122, 207
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	151, 305
KroI	GCCGGC	1 cut(s)	63
KroNI	GCCGGC	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	298, 304, 442
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	77, 90, 117, 158, 174, 229, 245, 325, 370
Lsp1109I	GCAGC	2 cut(s)	16, 216
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	97, 122, 207
MalI	GATC	3 cut(s)	300, 306, 444
MboI	GATC	3 cut(s)	298, 304, 442
MboII	GAAGA	2 cut(s)	62, 474
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	3 cut(s)	88, 312, 376
MroNI	GCCGGC	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	2 cut(s)	64, 312
MspR9I	CCNGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	153, 383
NaeI	GCCGGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	298, 304, 442
NgoMIV	GCCGGC	1 cut(s)	63
NlaIII	CATG	2 cut(s)	151, 305
NlaIV	GGNNCC	1 cut(s)	351
NspV	TTCGAA	1 cut(s)	186
PagI	TCATGA	1 cut(s)	301
PctI	GAATGC	1 cut(s)	388
PdiI	GCCGGC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	2 cut(s)	221, 247
PflFI	GACNNNGTC	1 cut(s)	99
PflMI	CCANNNNNTGG	2 cut(s)	14, 243
PkrI	GCNGC	2 cut(s)	6, 231
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	288
PsyI	GACNNNGTC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	5, 230
Sau3AI	GATC	3 cut(s)	298, 304, 442
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	1 cut(s)	105
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	186
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	145, 170
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	3 cut(s)	100, 125, 210
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	221, 247
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	364, 379
TseI	GCWGC	2 cut(s)	4, 229
TspDTI	ATGAA	2 cut(s)	63, 234
TspGWI	ACGGA	2 cut(s)	31, 311
TspRI	CASTG	2 cut(s)	364, 379
Tth111I	GACNNNGTC	1 cut(s)	99
Van91I	CCANNNNNTGG	2 cut(s)	14, 243
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	12
ZraI	GACGTC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.